Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47326 * 2 1 4 4 C 1.52997 * 109.47079 * 119.99873 * 2 1 3 5 5 H 1.09002 * 109.47136 * 186.40317 * 4 2 1 6 6 C 1.53000 * 109.47383 * 306.40066 * 4 2 1 7 7 C 1.50692 * 109.47291 * 290.86166 * 6 4 2 8 8 H 1.08002 * 120.00055 * 355.68119 * 7 6 4 9 9 C 1.37883 * 120.00123 * 175.68222 * 7 6 4 10 10 N 1.31507 * 119.99889 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99986 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47277 * 60.00222 * 11 9 7 13 13 H 1.48504 * 109.47241 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47298 * 300.00316 * 11 9 7 15 15 C 1.52998 * 109.47173 * 66.40355 * 4 2 1 16 16 H 1.09003 * 110.80663 * 300.59598 * 15 4 2 17 17 C 1.54816 * 110.91056 * 176.96224 * 15 4 2 18 18 C 1.54091 * 104.19026 * 220.91949 * 17 15 4 19 19 O 1.43745 * 107.29589 * 357.97166 * 18 17 15 20 20 C 1.44425 * 106.99839 * 26.48708 * 19 18 17 21 21 H 1.09005 * 109.47268 * 305.54326 * 1 2 3 22 22 H 1.08997 * 109.47239 * 65.53696 * 1 2 3 23 23 H 1.09000 * 109.47265 * 185.54333 * 1 2 3 24 24 H 1.08999 * 109.46920 * 240.00079 * 2 1 3 25 25 H 1.09000 * 109.47135 * 166.28662 * 3 2 1 26 26 H 1.09008 * 109.46829 * 286.29074 * 3 2 1 27 27 H 1.09003 * 109.46844 * 46.28321 * 3 2 1 28 28 H 1.08998 * 109.46757 * 50.86092 * 6 4 2 29 29 H 1.08999 * 109.47142 * 170.85619 * 6 4 2 30 30 H 0.96998 * 120.00229 * 179.97438 * 10 9 7 31 31 H 1.08997 * 110.48753 * 339.60345 * 17 15 4 32 32 H 1.09001 * 110.48193 * 102.24489 * 17 15 4 33 33 H 1.09005 * 109.88020 * 117.39406 * 18 17 15 34 34 H 1.08997 * 109.88136 * 238.54450 * 18 17 15 35 35 H 1.09004 * 110.65063 * 201.48100 * 20 19 18 36 36 H 1.09000 * 110.60023 * 78.46998 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1239 -0.6230 1.3084 6 6 1.4029 -0.0988 2.4933 7 6 1.9478 1.2916 2.6945 8 1 2.7263 1.6657 2.0460 9 6 1.4527 2.0864 3.7066 10 7 0.5053 1.6308 4.4966 11 14 2.1287 3.8097 3.9564 12 1 1.9042 4.6125 2.7275 13 1 1.4352 4.4523 5.1016 14 1 3.5846 3.7342 4.2392 15 6 1.6656 -2.2026 1.1714 16 1 0.5848 -2.3257 1.1008 17 6 2.2321 -2.9802 2.3844 18 6 2.7382 -4.3047 1.7811 19 8 2.4311 -4.2797 0.3770 20 6 2.3796 -2.8918 -0.0192 21 1 -0.3634 0.5974 0.8362 22 1 -0.3633 0.4255 -0.9354 23 1 -0.3634 -1.0228 0.0993 24 1 1.8933 -0.5138 -0.8900 25 1 3.1024 1.4522 0.2436 26 1 1.8893 1.8811 -0.9865 27 1 1.4915 2.0218 0.7428 28 1 0.3220 -0.0500 2.3621 29 1 1.6358 -0.7101 3.3652 30 1 0.1572 2.1897 5.2089 31 1 3.0549 -2.4294 2.8401 32 1 1.4470 -3.1697 3.1164 33 1 3.8156 -4.3890 1.9234 34 1 2.2327 -5.1454 2.2561 35 1 1.7995 -2.7747 -0.9346 36 1 3.3854 -2.4919 -0.1472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260609017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -71.181501 kcal Electronic energy + Delta-G solvation = -15117.788111 eV Core-core repulsion = 12794.095773 eV Total energy + Delta-G solvation = -2323.692338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37185 -36.72951 -32.52886 -31.84737 -29.05815 -28.41427 -26.51491 -24.86587 -22.45663 -21.57532 -20.25318 -18.10027 -16.37265 -16.16888 -15.42574 -14.81510 -14.44141 -14.19909 -13.33381 -13.07994 -12.66277 -12.36481 -12.04089 -11.61055 -11.29023 -11.19640 -11.01554 -10.94157 -10.70014 -10.56545 -10.38142 -10.30964 -10.19422 -9.63545 -9.46305 -9.39463 -8.90842 -8.65917 -8.27983 -5.97292 -3.94578 3.32435 3.37923 3.39856 4.26531 4.46800 5.03130 5.22682 5.30752 5.37841 5.45979 5.64809 5.75600 5.78607 5.86020 6.00576 6.07617 6.18264 6.23459 6.39918 6.42356 6.45986 6.54215 6.75932 6.79272 6.88403 6.93754 7.05534 7.16964 7.22132 7.49645 7.75306 7.87453 8.05126 8.47284 9.08683 9.64839 11.14036 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037134 B = 0.009180 C = 0.008178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.846291 B = 3049.542212 C = 3422.862630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.069 4.069 5 H 0.057 0.943 6 C 0.025 3.975 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.883 3.117 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.278 1.278 15 C -0.113 4.113 16 H 0.080 0.920 17 C -0.148 4.148 18 C 0.047 3.953 19 O -0.389 6.389 20 C 0.050 3.950 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.022 0.978 27 H 0.094 0.906 28 H 0.027 0.973 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -6.212 -6.592 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.203 4.203 4 C -0.087 4.087 5 H 0.075 0.925 6 C -0.012 4.012 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.711 3.289 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.132 4.132 16 H 0.099 0.901 17 C -0.185 4.185 18 C -0.030 4.030 19 O -0.309 6.309 20 C -0.026 4.026 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.219 -6.345 -6.568 9.398 hybrid contribution 0.394 1.174 0.445 1.316 sum 2.613 -5.171 -6.123 8.430 Atomic orbital electron populations 1.21932 0.96089 1.01022 1.01256 1.20911 0.95491 0.96554 0.96413 1.22242 1.01170 0.96803 1.00061 1.21301 0.99580 0.90193 0.97663 0.92490 1.19244 0.96580 0.94874 0.90515 1.21511 1.20351 0.99298 1.14055 0.91533 1.24989 0.95341 0.98058 0.96147 1.69948 1.27850 1.36836 1.18974 0.86808 0.79150 0.85292 0.77674 1.20258 1.21479 1.20416 1.22842 1.00434 0.96841 0.93068 0.90133 1.22951 1.01764 0.95020 0.98792 1.23165 0.99217 0.98590 0.82042 1.88791 1.92283 1.25891 1.23912 1.23692 0.99741 0.80866 0.98342 0.90809 0.94488 0.93724 0.93843 0.93596 0.95882 0.88733 0.95467 0.96969 0.93154 0.90247 0.90723 0.93019 0.90572 0.89567 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.36 37.16 0.31 -2.27 16 2 C -0.08 -1.35 2.60 -90.62 -0.24 -1.59 16 3 C -0.15 -2.77 7.57 37.16 0.28 -2.48 16 4 C -0.07 -1.33 1.16 -90.62 -0.10 -1.43 16 5 H 0.06 1.13 8.02 -51.93 -0.42 0.72 16 6 C 0.02 0.59 4.11 -27.89 -0.11 0.47 16 7 C -0.51 -13.41 6.56 -34.44 -0.23 -13.63 16 8 H 0.07 1.68 5.12 -52.49 -0.27 1.41 16 9 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 11 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 C -0.11 -1.92 2.40 -88.61 -0.21 -2.13 16 16 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 17 C -0.15 -2.38 5.51 -25.20 -0.14 -2.52 16 18 C 0.05 0.67 7.70 37.73 0.29 0.96 16 19 O -0.39 -6.36 11.52 -35.23 -0.41 -6.77 16 20 C 0.05 0.77 6.23 38.21 0.24 1.00 16 21 H 0.07 1.51 6.40 -51.93 -0.33 1.18 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.74 6.40 -51.93 -0.33 0.41 16 24 H 0.04 0.70 7.08 -51.93 -0.37 0.33 16 25 H 0.04 0.87 7.13 -51.93 -0.37 0.49 16 26 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.09 2.07 5.64 -51.93 -0.29 1.77 16 28 H 0.03 0.70 5.94 -51.93 -0.31 0.39 16 29 H 0.01 0.31 7.03 -51.93 -0.36 -0.05 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.08 1.34 7.73 -51.93 -0.40 0.94 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 36 H 0.06 0.85 8.05 -51.93 -0.42 0.44 16 LS Contribution 271.36 15.07 4.09 4.09 Total: -1.00 -27.97 271.36 -6.49 -34.46 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.87 Total: -0.34 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.01 Total: -22.20 kcal Atomic # 7 Polarization: -26.05 SS G_CDS: 0.74 Total: -25.31 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.41 Total: -6.77 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.97 -6.49 -34.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260609017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.722 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds