Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47354 * 239.99752 * 2 1 3 5 5 H 1.09005 * 109.46813 * 306.75736 * 4 2 1 6 6 C 1.52991 * 109.47208 * 186.75696 * 4 2 1 7 7 C 1.50704 * 109.47499 * 64.80411 * 6 4 2 8 8 H 1.08003 * 119.99799 * 5.10082 * 7 6 4 9 9 C 1.37875 * 120.00381 * 185.10802 * 7 6 4 10 10 N 1.31520 * 119.99689 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00085 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47119 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47123 * 119.99399 * 11 9 7 14 14 H 1.48500 * 109.47165 * 239.99543 * 11 9 7 15 15 C 1.52996 * 109.46817 * 66.75367 * 4 2 1 16 16 H 1.08999 * 110.43653 * 51.22016 * 15 4 2 17 17 C 1.54808 * 110.49125 * 288.52603 * 15 4 2 18 18 C 1.54991 * 102.09653 * 220.44318 * 17 15 4 19 19 O 1.44382 * 103.48743 * 37.02727 * 18 17 15 20 20 C 1.43737 * 106.97742 * 319.93843 * 19 18 17 21 21 H 1.08998 * 109.46764 * 48.96300 * 1 2 3 22 22 H 1.08997 * 109.47144 * 168.96536 * 1 2 3 23 23 H 1.08998 * 109.46643 * 288.96576 * 1 2 3 24 24 H 1.09004 * 109.46842 * 119.99794 * 2 1 3 25 25 H 1.09003 * 109.47608 * 65.56524 * 3 2 1 26 26 H 1.08995 * 109.47237 * 185.56983 * 3 2 1 27 27 H 1.09008 * 109.47349 * 305.56416 * 3 2 1 28 28 H 1.09005 * 109.47308 * 184.79845 * 6 4 2 29 29 H 1.08994 * 109.47224 * 304.80205 * 6 4 2 30 30 H 0.97000 * 119.99471 * 180.02562 * 10 9 7 31 31 H 1.09002 * 110.91126 * 338.64948 * 17 15 4 32 32 H 1.09004 * 110.90168 * 102.24636 * 17 15 4 33 33 H 1.08995 * 110.62496 * 278.52368 * 18 17 15 34 34 H 1.09005 * 110.61761 * 155.52399 * 18 17 15 35 35 H 1.08998 * 109.88094 * 267.09146 * 20 19 18 36 36 H 1.09000 * 110.00482 * 146.00564 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 1.5814 -1.7081 -1.3116 6 6 3.5606 -0.8699 -1.1672 7 6 3.9160 -1.7679 -0.0102 8 1 3.1351 -2.2561 0.5540 9 6 5.2378 -1.9661 0.3280 10 7 6.1886 -1.3718 -0.3594 11 14 5.6782 -3.0786 1.7625 12 1 4.4355 -3.6219 2.3671 13 1 6.5245 -4.1988 1.2785 14 1 6.4247 -2.2990 2.7825 15 6 1.6733 0.0912 -2.4926 16 1 1.9914 1.1274 -2.3777 17 6 0.1504 0.0153 -2.7598 18 6 0.0977 -0.1213 -4.3028 19 8 1.2349 -0.9577 -4.6058 20 6 2.3089 -0.5318 -3.7508 21 1 -0.3633 0.6747 -0.7752 22 1 -0.3633 -1.0086 -0.1967 23 1 -0.3632 0.3340 0.9719 24 1 1.8934 -0.5138 0.8901 25 1 1.7604 1.9268 0.9356 26 1 3.1254 1.4441 -0.0997 27 1 1.5976 1.9843 -0.8360 28 1 3.9335 -1.3065 -2.0937 29 1 4.0140 0.1101 -1.0190 30 1 7.1186 -1.5115 -0.1216 31 1 -0.2863 -0.8588 -2.2767 32 1 -0.3478 0.9281 -2.4329 33 1 0.2010 0.8540 -4.7783 34 1 -0.8283 -0.6050 -4.6139 35 1 2.9191 0.2112 -4.2643 36 1 2.9240 -1.3869 -3.4706 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260609032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = -87.234734 kcal Electronic energy + Delta-G solvation = -15124.428322 eV Core-core repulsion = 12800.039864 eV Total energy + Delta-G solvation = -2324.388459 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87816 -37.99078 -34.87799 -32.54055 -31.80768 -29.44007 -27.96335 -26.50732 -24.11207 -23.04728 -21.82551 -19.62408 -18.38024 -17.55628 -16.77026 -16.54115 -15.85841 -15.39828 -15.22516 -14.58915 -14.34384 -13.95646 -13.70263 -13.11995 -13.05399 -12.83344 -12.69619 -12.45415 -12.28021 -12.21404 -12.17585 -11.85702 -11.41529 -11.26472 -11.08916 -10.77312 -10.64538 -10.48829 -10.41567 -8.15742 -6.22764 1.37388 1.38707 1.50518 2.41848 3.11358 3.18713 3.73490 3.84911 4.03100 4.25093 4.35971 4.36595 4.45965 4.49373 4.71720 4.84331 4.88608 4.92346 4.94523 4.98501 5.05198 5.09022 5.16541 5.27000 5.32978 5.35011 5.42981 5.56261 5.68350 5.74668 5.89587 5.97630 6.05782 6.34200 6.93418 7.44139 8.95836 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.033927 B = 0.009324 C = 0.008157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.098711 B = 3002.337302 C = 3431.795674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.057 4.057 5 H 0.043 0.957 6 C 0.026 3.974 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.953 3.047 12 H -0.264 1.264 13 H -0.282 1.282 14 H -0.280 1.280 15 C -0.112 4.112 16 H 0.087 0.913 17 C -0.141 4.141 18 C 0.037 3.963 19 O -0.407 6.407 20 C 0.046 3.954 21 H 0.080 0.920 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.068 0.932 28 H -0.009 1.009 29 H 0.003 0.997 30 H 0.260 0.740 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.055 0.945 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 5.280 -2.708 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.196 4.196 4 C -0.075 4.075 5 H 0.061 0.939 6 C -0.010 4.010 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.197 4.197 10 N -0.573 5.573 11 Si 0.779 3.221 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.205 1.205 15 C -0.131 4.131 16 H 0.105 0.895 17 C -0.178 4.178 18 C -0.039 4.039 19 O -0.327 6.327 20 C -0.030 4.030 21 H 0.099 0.901 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.009 0.991 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.748 5.128 -2.868 14.037 hybrid contribution 1.128 -0.597 0.844 1.530 sum -11.620 4.531 -2.023 12.636 Atomic orbital electron populations 1.22158 0.94016 1.01859 1.02312 1.20960 0.95998 0.96008 0.97253 1.21834 1.00204 0.95967 1.01564 1.21087 0.96163 0.96701 0.93564 0.93853 1.19204 0.91842 0.95366 0.94631 1.21645 0.91793 1.27600 1.15069 0.92790 1.25850 0.96821 0.97644 0.99393 1.70095 1.00065 1.45233 1.41948 0.85575 0.78347 0.78747 0.79474 1.18855 1.20767 1.20543 1.22601 0.96126 1.00259 0.94094 0.89494 1.23462 0.94749 1.03863 0.95741 1.23846 0.89595 0.95348 0.95111 1.88804 1.23135 1.59070 1.61644 1.23339 0.90023 0.99356 0.90331 0.90145 0.93244 0.92703 0.93415 0.92510 0.94946 0.91314 0.99089 0.97879 0.93105 0.90395 0.87619 0.91112 0.87483 0.92717 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 7.77 71.98 0.56 -3.29 16 2 C -0.08 -2.94 2.59 -10.79 -0.03 -2.97 16 3 C -0.14 -4.53 8.37 71.98 0.60 -3.93 16 4 C -0.06 -2.24 1.22 -10.80 -0.01 -2.26 16 5 H 0.04 1.82 7.89 -2.38 -0.02 1.80 16 6 C 0.03 1.35 4.09 29.85 0.12 1.47 16 7 C -0.52 -29.49 8.20 25.60 0.21 -29.28 16 8 H 0.05 2.98 7.28 -2.91 -0.02 2.96 16 9 C 0.00 0.01 5.46 84.65 0.46 0.47 16 10 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 11 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 12 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 15 C -0.11 -3.65 2.31 -9.80 -0.02 -3.67 16 16 H 0.09 2.71 6.02 -2.39 -0.01 2.70 16 17 C -0.14 -3.45 4.67 31.89 0.15 -3.30 16 18 C 0.04 0.89 7.72 72.66 0.56 1.45 16 19 O -0.41 -13.86 11.52 -148.98 -1.72 -15.58 16 20 C 0.05 1.66 6.85 72.36 0.50 2.16 16 21 H 0.08 1.74 4.92 -2.39 -0.01 1.73 16 22 H 0.05 1.30 7.46 -2.39 -0.02 1.28 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.97 6.88 -2.38 -0.02 1.96 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.03 1.27 6.31 -2.39 -0.02 1.25 16 27 H 0.07 1.88 6.44 -2.38 -0.02 1.86 16 28 H -0.01 -0.50 5.93 -2.38 -0.01 -0.52 16 29 H 0.00 0.16 6.32 -2.39 -0.02 0.15 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 31 H 0.08 1.97 6.44 -2.39 -0.02 1.95 16 32 H 0.11 1.98 6.65 -2.39 -0.02 1.96 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.83 5.81 -2.39 -0.01 2.81 16 Total: -1.00 -64.47 268.29 4.74 -59.73 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.05 Total: 8.61 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 3.10 Total: -43.16 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.72 Total: -15.58 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.47 4.74 -59.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260609032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.505 kcal (2) G-P(sol) polarization free energy of solvation -64.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds