Wall clock time and date at job start Mon Mar 30 2020 02:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47291 * 2 1 4 4 C 1.52998 * 109.46897 * 240.00256 * 2 1 3 5 5 H 1.09002 * 109.47508 * 304.97056 * 4 2 1 6 6 C 1.50698 * 109.47426 * 64.96889 * 4 2 1 7 7 H 1.08008 * 119.99839 * 84.81009 * 6 4 2 8 8 C 1.37872 * 120.00225 * 264.81851 * 6 4 2 9 9 N 1.31515 * 120.00339 * 0.30209 * 8 6 4 10 10 Si 1.86798 * 120.00119 * 180.31067 * 8 6 4 11 11 H 1.48501 * 109.47595 * 89.99688 * 10 8 6 12 12 H 1.48497 * 109.47322 * 209.99619 * 10 8 6 13 13 H 1.48506 * 109.46939 * 329.99328 * 10 8 6 14 14 C 1.52999 * 109.47135 * 184.97141 * 4 2 1 15 15 H 1.08995 * 109.52463 * 301.31725 * 14 4 2 16 16 C 1.53182 * 109.52236 * 181.19214 * 14 4 2 17 17 C 1.53184 * 109.03669 * 183.11426 * 16 14 4 18 18 C 1.53090 * 109.16210 * 56.97707 * 17 16 14 19 19 O 1.42897 * 109.41960 * 302.39380 * 18 17 16 20 20 C 1.42916 * 114.15420 * 61.12377 * 19 18 17 21 21 H 1.08991 * 109.46973 * 182.33892 * 1 2 3 22 22 H 1.08995 * 109.46669 * 302.33802 * 1 2 3 23 23 H 1.08999 * 109.46683 * 62.33469 * 1 2 3 24 24 H 1.08996 * 109.46808 * 120.00346 * 2 1 3 25 25 H 1.08998 * 109.46878 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47498 * 300.06805 * 3 2 1 27 27 H 1.09005 * 109.46772 * 60.06903 * 3 2 1 28 28 H 0.96998 * 120.00466 * 180.02562 * 9 8 6 29 29 H 1.09005 * 109.54388 * 302.98129 * 16 14 4 30 30 H 1.08997 * 109.54421 * 63.24429 * 16 14 4 31 31 H 1.08998 * 109.52226 * 176.88960 * 17 16 14 32 32 H 1.09004 * 109.51749 * 297.07552 * 17 16 14 33 33 H 1.09004 * 109.47634 * 62.37498 * 18 17 16 34 34 H 1.08999 * 109.47612 * 182.39714 * 18 17 16 35 35 H 1.09002 * 109.53532 * 178.92704 * 20 19 18 36 36 H 1.09000 * 109.42860 * 58.88969 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6058 -1.7200 -1.2950 6 6 1.6407 0.0567 -2.4766 7 1 2.2556 0.8752 -2.8210 8 6 0.4904 -0.2763 -3.1599 9 7 -0.2615 -1.2690 -2.7372 10 14 0.0000 0.6824 -4.6863 11 1 0.6004 0.0448 -5.8856 12 1 -1.4793 0.6849 -4.8153 13 1 0.4892 2.0799 -4.5714 14 6 3.5649 -0.8304 -1.1884 15 1 3.9990 0.1670 -1.1191 16 6 4.0792 -1.5258 -2.4527 17 6 5.5974 -1.6992 -2.3451 18 6 5.9243 -2.4877 -1.0743 19 8 5.3914 -1.8021 0.0606 20 6 3.9704 -1.6512 0.0386 21 1 -0.3633 -1.0267 0.0419 22 1 -0.3632 0.5497 0.8683 23 1 -0.3633 0.4772 -0.9102 24 1 1.8933 -0.5139 0.8899 25 1 3.1301 1.4424 -0.0005 26 1 1.6758 1.9567 -0.8894 27 1 1.6778 1.9559 0.8907 28 1 -1.0706 -1.5035 -3.2181 29 1 3.6065 -2.5033 -2.5491 30 1 3.8426 -0.9173 -3.3254 31 1 5.9645 -2.2426 -3.2157 32 1 6.0734 -0.7197 -2.2986 33 1 5.4816 -3.4817 -1.1394 34 1 7.0056 -2.5774 -0.9703 35 1 3.6443 -1.1381 0.9432 36 1 3.5022 -2.6343 -0.0108 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260627090.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:29 Heat of formation + Delta-G solvation = -79.941623 kcal Electronic energy + Delta-G solvation = -15357.117186 eV Core-core repulsion = 13033.044980 eV Total energy + Delta-G solvation = -2324.072206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.93536 -36.12793 -32.72636 -31.93450 -30.51601 -26.59150 -25.92934 -24.61096 -23.28744 -21.61944 -19.40908 -18.36316 -16.17964 -15.64603 -15.29391 -14.51411 -14.08535 -13.74903 -13.51217 -13.18240 -12.40151 -12.26388 -11.91616 -11.79678 -11.33970 -11.01110 -10.84292 -10.76843 -10.53960 -10.43771 -10.29640 -9.89857 -9.84746 -9.77843 -9.18981 -8.95771 -8.73416 -8.42521 -8.32364 -5.97133 -3.97400 3.29874 3.37974 3.40763 4.40137 4.45919 5.32925 5.39582 5.48253 5.55815 5.77111 5.86689 6.03016 6.13137 6.17654 6.28198 6.29721 6.34754 6.42050 6.62372 6.69273 6.75989 6.92151 6.96551 7.08762 7.17396 7.20793 7.35049 7.47027 7.61390 7.73669 7.87306 7.90134 8.00092 8.50585 9.09334 9.63547 11.11267 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.011637 C = 0.009555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.827228 B = 2405.605749 C = 2929.718529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 C -0.133 4.133 4 C 0.047 3.953 5 H 0.056 0.944 6 C -0.494 4.494 7 H 0.051 0.949 8 C 0.066 3.934 9 N -0.888 5.888 10 Si 0.879 3.121 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.275 1.275 14 C -0.109 4.109 15 H 0.062 0.938 16 C -0.101 4.101 17 C -0.158 4.158 18 C 0.064 3.936 19 O -0.395 6.395 20 C 0.061 3.939 21 H 0.045 0.955 22 H 0.011 0.989 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.258 0.742 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 -0.739 2.621 7.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.103 4.103 3 C -0.190 4.190 4 C 0.028 3.972 5 H 0.074 0.926 6 C -0.533 4.533 7 H 0.069 0.931 8 C -0.135 4.135 9 N -0.527 5.527 10 Si 0.707 3.293 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 C -0.128 4.128 15 H 0.080 0.920 16 C -0.138 4.138 17 C -0.196 4.196 18 C -0.013 4.013 19 O -0.314 6.314 20 C -0.015 4.015 21 H 0.064 0.936 22 H 0.030 0.970 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.655 -0.768 2.723 7.231 hybrid contribution -0.571 0.406 -1.179 1.372 sum 6.084 -0.362 1.544 6.287 Atomic orbital electron populations 1.21564 0.95704 1.00611 0.99598 1.21228 0.95851 0.95284 0.97910 1.21764 0.99335 0.97814 1.00089 1.18904 0.87692 0.98003 0.92571 0.92591 1.20940 1.07112 1.15449 1.09763 0.93052 1.24883 0.96730 0.95026 0.96857 1.69949 1.14725 1.28328 1.39703 0.86808 0.77631 0.80681 0.84156 1.20903 1.21431 1.20027 1.21875 1.00299 0.97887 0.92701 0.91965 1.21467 0.91779 1.00908 0.99684 1.22271 0.99173 1.00677 0.97483 1.22461 0.97970 0.94487 0.86409 1.87826 1.22718 1.78301 1.42575 1.22890 0.79519 0.99152 0.99972 0.93623 0.97008 0.91186 0.95234 0.94269 0.91854 0.95733 0.93215 0.92771 0.90659 0.92084 0.91854 0.93893 0.90173 0.89380 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 8.23 37.16 0.31 -2.32 16 2 C -0.08 -1.80 2.50 -90.62 -0.23 -2.03 16 3 C -0.13 -2.66 8.63 37.16 0.32 -2.34 16 4 C 0.05 1.08 1.30 -91.77 -0.12 0.97 16 5 H 0.06 1.46 7.30 -51.93 -0.38 1.09 16 6 C -0.49 -12.51 5.02 -34.44 -0.17 -12.68 16 7 H 0.05 1.32 7.74 -52.48 -0.41 0.92 16 8 C 0.07 1.73 4.38 -17.82 -0.08 1.66 16 9 N -0.89 -24.22 11.64 55.43 0.65 -23.57 16 10 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C -0.11 -2.21 1.74 -90.48 -0.16 -2.37 16 15 H 0.06 1.31 6.51 -51.93 -0.34 0.97 16 16 C -0.10 -1.96 4.98 -26.54 -0.13 -2.09 16 17 C -0.16 -2.53 6.14 -26.59 -0.16 -2.69 16 18 C 0.06 0.98 6.84 37.20 0.25 1.24 16 19 O -0.40 -7.17 10.76 -35.23 -0.38 -7.55 16 20 C 0.06 1.13 5.75 37.20 0.21 1.34 16 21 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.07 1.73 6.14 -51.93 -0.32 1.42 16 24 H 0.03 0.60 6.28 -51.93 -0.33 0.27 16 25 H 0.04 0.75 6.54 -51.93 -0.34 0.41 16 26 H 0.06 1.36 7.03 -51.93 -0.36 1.00 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.57 7.31 -51.93 -0.38 1.19 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.59 6.49 -51.93 -0.34 1.26 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 271.71 15.07 4.09 4.09 Total: -1.00 -26.34 271.71 -6.74 -33.08 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.13 Total: -0.44 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 0.04 Total: -21.32 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.65 Total: -23.57 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.38 Total: -7.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.34 -6.74 -33.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627090.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.857 kcal (2) G-P(sol) polarization free energy of solvation -26.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds