Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00560 * 2 1 3 5 5 H 1.09004 * 109.47108 * 54.52474 * 4 2 1 6 6 C 1.50696 * 109.47039 * 294.51841 * 4 2 1 7 7 H 1.07998 * 120.00459 * 275.26296 * 6 4 2 8 8 C 1.37876 * 119.99917 * 95.26028 * 6 4 2 9 9 N 1.31517 * 119.99837 * 0.71613 * 8 6 4 10 10 Si 1.86799 * 120.00129 * 180.71545 * 8 6 4 11 11 H 1.48507 * 109.46963 * 90.00462 * 10 8 6 12 12 H 1.48508 * 109.47225 * 209.99882 * 10 8 6 13 13 H 1.48494 * 109.47286 * 330.00166 * 10 8 6 14 14 C 1.53007 * 109.46936 * 174.51999 * 4 2 1 15 15 H 1.08992 * 109.56900 * 56.46927 * 14 4 2 16 16 C 1.53176 * 109.52304 * 296.31024 * 14 4 2 17 17 C 1.53175 * 109.03698 * 183.11358 * 16 14 4 18 18 C 1.53092 * 109.16229 * 56.98145 * 17 16 14 19 19 O 1.42908 * 109.41659 * 302.39269 * 18 17 16 20 20 C 1.42902 * 114.09635 * 61.15296 * 19 18 17 21 21 H 1.08998 * 109.46592 * 303.69386 * 1 2 3 22 22 H 1.08996 * 109.47397 * 63.69163 * 1 2 3 23 23 H 1.08995 * 109.47262 * 183.70014 * 1 2 3 24 24 H 1.09009 * 109.46464 * 240.00483 * 2 1 3 25 25 H 1.09002 * 109.47127 * 62.11673 * 3 2 1 26 26 H 1.09003 * 109.46948 * 182.11156 * 3 2 1 27 27 H 1.08997 * 109.47518 * 302.11114 * 3 2 1 28 28 H 0.97008 * 120.00204 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.54452 * 63.24923 * 16 14 4 30 30 H 1.08999 * 109.54283 * 302.98103 * 16 14 4 31 31 H 1.09005 * 109.52109 * 297.07848 * 17 16 14 32 32 H 1.08994 * 109.52701 * 176.88742 * 17 16 14 33 33 H 1.09002 * 109.48182 * 62.37096 * 18 17 16 34 34 H 1.08996 * 109.48249 * 182.39932 * 18 17 16 35 35 H 1.09009 * 109.47751 * 58.83138 * 20 19 18 36 36 H 1.08997 * 109.48173 * 178.86150 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.5988 -1.7169 1.2994 6 6 1.6516 0.0629 2.4759 7 1 2.2731 0.8786 2.8146 8 6 0.5027 -0.2608 3.1659 9 7 -0.2468 -1.2631 2.7616 10 14 0.0105 0.7241 4.6749 11 1 -0.8532 1.8602 4.2645 12 1 -0.7356 -0.1504 5.6152 13 1 1.2290 1.2454 5.3448 14 6 3.5639 -0.8417 1.1821 15 1 4.0037 0.1490 1.0686 16 6 3.9562 -1.7160 -0.0129 17 6 5.4777 -1.8931 -0.0242 18 6 5.9230 -2.4984 1.3096 19 8 5.4999 -1.6519 2.3803 20 6 4.0831 -1.4876 2.4693 21 1 -0.3632 0.5701 0.8550 22 1 -0.3634 0.4554 -0.9212 23 1 -0.3633 -1.0255 0.0663 24 1 1.8933 -0.5138 -0.8901 25 1 1.7080 1.9452 0.9084 26 1 3.1294 1.4426 -0.0379 27 1 1.6462 1.9671 -0.8704 28 1 -1.0550 -1.4911 3.2473 29 1 3.6385 -1.2338 -0.9374 30 1 3.4763 -2.6906 0.0752 31 1 5.9563 -0.9235 -0.1620 32 1 5.7609 -2.5592 -0.8391 33 1 5.4759 -3.4854 1.4282 34 1 7.0093 -2.5873 1.3238 35 1 3.6120 -2.4615 2.6030 36 1 3.8440 -0.8482 3.3189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260627093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = -80.824974 kcal Electronic energy + Delta-G solvation = -15356.723329 eV Core-core repulsion = 13032.612818 eV Total energy + Delta-G solvation = -2324.110511 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88502 -36.13433 -32.69828 -31.82286 -30.68777 -26.49733 -25.94657 -24.29650 -23.76115 -21.33092 -19.64691 -18.27438 -16.06312 -15.58862 -15.31140 -14.47973 -14.15379 -13.75675 -13.53726 -12.92711 -12.64875 -12.26510 -11.93983 -11.78870 -11.22846 -11.05799 -10.88279 -10.74755 -10.63992 -10.40843 -10.34741 -9.90051 -9.84134 -9.56825 -9.42145 -8.84076 -8.75298 -8.45516 -8.30705 -5.97834 -3.98656 3.31015 3.38955 3.42205 4.45329 4.55252 5.29495 5.34387 5.41113 5.51521 5.78217 5.83765 6.05265 6.13883 6.24149 6.28182 6.31435 6.41544 6.45195 6.54018 6.62890 6.70286 6.91781 6.95328 7.04805 7.10299 7.17467 7.33828 7.47691 7.61603 7.81363 7.85216 7.95044 8.00215 8.49757 9.08902 9.63014 11.10435 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.011767 C = 0.009610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.151452 B = 2379.048618 C = 2913.067577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.133 4.133 4 C 0.047 3.953 5 H 0.056 0.944 6 C -0.502 4.502 7 H 0.053 0.947 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.879 3.121 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.109 4.109 15 H 0.062 0.938 16 C -0.120 4.120 17 C -0.154 4.154 18 C 0.063 3.937 19 O -0.397 6.397 20 C 0.077 3.923 21 H 0.062 0.938 22 H 0.010 0.990 23 H 0.050 0.950 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.258 0.742 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -0.909 -4.439 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.190 4.190 4 C 0.029 3.971 5 H 0.075 0.925 6 C -0.540 4.540 7 H 0.071 0.929 8 C -0.134 4.134 9 N -0.526 5.526 10 Si 0.707 3.293 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.127 4.127 15 H 0.080 0.920 16 C -0.157 4.157 17 C -0.192 4.192 18 C -0.014 4.014 19 O -0.316 6.316 20 C 0.001 3.999 21 H 0.081 0.919 22 H 0.029 0.971 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.498 -0.925 -4.253 7.820 hybrid contribution -0.630 0.409 0.576 0.946 sum 5.868 -0.516 -3.677 6.944 Atomic orbital electron populations 1.21540 0.95812 1.01553 0.98435 1.21177 0.95635 0.95168 0.98021 1.21768 0.99065 0.97870 1.00299 1.18892 0.87732 0.97988 0.92537 0.92547 1.21003 1.07331 1.15785 1.09896 0.92899 1.24891 0.96700 0.94902 0.96881 1.69944 1.14829 1.27792 1.40031 0.86800 0.78727 0.80207 0.83531 1.20853 1.21425 1.19926 1.21863 1.00342 0.97677 0.92859 0.91999 1.21743 0.93684 1.00403 0.99876 1.22197 0.98113 1.01261 0.97649 1.22420 0.98823 0.93035 0.87161 1.87869 1.24793 1.68839 1.50136 1.22680 0.77917 0.99890 0.99382 0.91903 0.97078 0.93083 0.95131 0.91742 0.94453 0.95789 0.93176 0.92028 0.92546 0.91755 0.92166 0.93981 0.90270 0.94016 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.06 37.16 0.30 -2.30 16 2 C -0.08 -1.74 2.55 -90.62 -0.23 -1.97 16 3 C -0.13 -2.65 8.63 37.15 0.32 -2.33 16 4 C 0.05 1.09 1.30 -91.77 -0.12 0.97 16 5 H 0.06 1.48 7.28 -51.93 -0.38 1.10 16 6 C -0.50 -12.69 4.88 -34.44 -0.17 -12.86 16 7 H 0.05 1.36 7.70 -52.49 -0.40 0.96 16 8 C 0.07 1.78 4.45 -17.82 -0.08 1.70 16 9 N -0.89 -24.17 11.73 55.43 0.65 -23.52 16 10 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 C -0.11 -2.21 1.80 -90.48 -0.16 -2.37 16 15 H 0.06 1.30 6.47 -51.93 -0.34 0.96 16 16 C -0.12 -2.10 4.96 -26.55 -0.13 -2.23 16 17 C -0.15 -2.33 6.14 -26.59 -0.16 -2.49 16 18 C 0.06 0.98 6.84 37.20 0.25 1.23 16 19 O -0.40 -7.63 10.77 -35.23 -0.38 -8.01 16 20 C 0.08 1.58 5.78 37.20 0.21 1.80 16 21 H 0.06 1.54 6.68 -51.93 -0.35 1.20 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 23 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 24 H 0.03 0.62 6.35 -51.92 -0.33 0.29 16 25 H 0.06 1.39 6.90 -51.93 -0.36 1.03 16 26 H 0.04 0.70 6.61 -51.93 -0.34 0.36 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.06 1.06 6.58 -51.93 -0.34 0.71 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.10 2.26 7.22 -51.93 -0.38 1.89 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -26.25 272.02 -6.76 -33.02 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.15 Total: -0.43 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 0.03 Total: -20.86 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.65 Total: -23.52 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.38 Total: -8.01 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.25 -6.76 -33.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.810 kcal (2) G-P(sol) polarization free energy of solvation -26.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds