Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47197 * 120.00560 * 2 1 3 5 5 H 1.09004 * 109.47108 * 54.52474 * 4 2 1 6 6 C 1.50696 * 109.47039 * 294.51841 * 4 2 1 7 7 H 1.07998 * 120.00459 * 275.26296 * 6 4 2 8 8 C 1.37876 * 119.99917 * 95.26028 * 6 4 2 9 9 N 1.31517 * 119.99837 * 0.71613 * 8 6 4 10 10 Si 1.86799 * 120.00129 * 180.71545 * 8 6 4 11 11 H 1.48507 * 109.46963 * 90.00462 * 10 8 6 12 12 H 1.48508 * 109.47225 * 209.99882 * 10 8 6 13 13 H 1.48494 * 109.47286 * 330.00166 * 10 8 6 14 14 C 1.53007 * 109.46936 * 174.51999 * 4 2 1 15 15 H 1.08992 * 109.56900 * 56.46927 * 14 4 2 16 16 C 1.53176 * 109.52304 * 296.31024 * 14 4 2 17 17 C 1.53175 * 109.03698 * 183.11358 * 16 14 4 18 18 C 1.53092 * 109.16229 * 56.98145 * 17 16 14 19 19 O 1.42908 * 109.41659 * 302.39269 * 18 17 16 20 20 C 1.42902 * 114.09635 * 61.15296 * 19 18 17 21 21 H 1.08998 * 109.46592 * 303.69386 * 1 2 3 22 22 H 1.08996 * 109.47397 * 63.69163 * 1 2 3 23 23 H 1.08995 * 109.47262 * 183.70014 * 1 2 3 24 24 H 1.09009 * 109.46464 * 240.00483 * 2 1 3 25 25 H 1.09002 * 109.47127 * 62.11673 * 3 2 1 26 26 H 1.09003 * 109.46948 * 182.11156 * 3 2 1 27 27 H 1.08997 * 109.47518 * 302.11114 * 3 2 1 28 28 H 0.97008 * 120.00204 * 179.97438 * 9 8 6 29 29 H 1.08998 * 109.54452 * 63.24923 * 16 14 4 30 30 H 1.08999 * 109.54283 * 302.98103 * 16 14 4 31 31 H 1.09005 * 109.52109 * 297.07848 * 17 16 14 32 32 H 1.08994 * 109.52701 * 176.88742 * 17 16 14 33 33 H 1.09002 * 109.48182 * 62.37096 * 18 17 16 34 34 H 1.08996 * 109.48249 * 182.39932 * 18 17 16 35 35 H 1.09009 * 109.47751 * 58.83138 * 20 19 18 36 36 H 1.08997 * 109.48173 * 178.86150 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.5988 -1.7169 1.2994 6 6 1.6516 0.0629 2.4759 7 1 2.2731 0.8786 2.8146 8 6 0.5027 -0.2608 3.1659 9 7 -0.2468 -1.2631 2.7616 10 14 0.0105 0.7241 4.6749 11 1 -0.8532 1.8602 4.2645 12 1 -0.7356 -0.1504 5.6152 13 1 1.2290 1.2454 5.3448 14 6 3.5639 -0.8417 1.1821 15 1 4.0037 0.1490 1.0686 16 6 3.9562 -1.7160 -0.0129 17 6 5.4777 -1.8931 -0.0242 18 6 5.9230 -2.4984 1.3096 19 8 5.4999 -1.6519 2.3803 20 6 4.0831 -1.4876 2.4693 21 1 -0.3632 0.5701 0.8550 22 1 -0.3634 0.4554 -0.9212 23 1 -0.3633 -1.0255 0.0663 24 1 1.8933 -0.5138 -0.8901 25 1 1.7080 1.9452 0.9084 26 1 3.1294 1.4426 -0.0379 27 1 1.6462 1.9671 -0.8704 28 1 -1.0550 -1.4911 3.2473 29 1 3.6385 -1.2338 -0.9374 30 1 3.4763 -2.6906 0.0752 31 1 5.9563 -0.9235 -0.1620 32 1 5.7609 -2.5592 -0.8391 33 1 5.4759 -3.4854 1.4282 34 1 7.0093 -2.5873 1.3238 35 1 3.6120 -2.4615 2.6030 36 1 3.8440 -0.8482 3.3189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = -94.807578 kcal Electronic energy + Delta-G solvation = -15357.329660 eV Core-core repulsion = 13032.612818 eV Total energy + Delta-G solvation = -2324.716842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40998 -37.83056 -34.29480 -33.66673 -32.21508 -28.29828 -27.66029 -25.89967 -25.42685 -22.86177 -21.20595 -20.02472 -18.02562 -17.05309 -16.80418 -16.36633 -15.65922 -15.41142 -15.03593 -14.55881 -14.33841 -13.92530 -13.54305 -13.32961 -13.08187 -12.80445 -12.65521 -12.46489 -12.19080 -12.02859 -11.93461 -11.69083 -11.50927 -11.16725 -11.08288 -10.61139 -10.53492 -10.35690 -10.01816 -8.00220 -6.03904 1.40378 1.44600 1.51160 2.48694 3.12266 3.31337 4.03807 4.11562 4.14641 4.24383 4.46755 4.54335 4.61415 4.66675 4.71094 4.84879 4.98114 5.01277 5.05829 5.07930 5.17634 5.24192 5.27631 5.36797 5.46861 5.52233 5.60093 5.70947 5.77754 5.88568 6.03241 6.07810 6.44723 6.53859 7.08804 7.58946 9.07237 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.011767 C = 0.009610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.151452 B = 2379.048618 C = 2913.067577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.082 4.082 3 C -0.125 4.125 4 C 0.049 3.951 5 H 0.020 0.980 6 C -0.498 4.498 7 H 0.045 0.955 8 C 0.026 3.974 9 N -0.913 5.913 10 Si 0.927 3.073 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.272 1.272 14 C -0.103 4.103 15 H 0.058 0.942 16 C -0.117 4.117 17 C -0.147 4.147 18 C 0.052 3.948 19 O -0.410 6.410 20 C 0.086 3.914 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.029 0.971 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.255 0.745 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.028 0.972 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.008 -0.559 -5.704 9.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.101 4.101 3 C -0.182 4.182 4 C 0.030 3.970 5 H 0.039 0.961 6 C -0.537 4.537 7 H 0.063 0.937 8 C -0.172 4.172 9 N -0.553 5.553 10 Si 0.754 3.246 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.196 1.196 14 C -0.121 4.121 15 H 0.077 0.923 16 C -0.155 4.155 17 C -0.184 4.184 18 C -0.024 4.024 19 O -0.329 6.329 20 C 0.010 3.990 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.046 0.954 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.972 -0.567 -5.520 9.713 hybrid contribution -1.035 0.273 0.945 1.427 sum 6.937 -0.294 -4.575 8.315 Atomic orbital electron populations 1.21423 0.96603 0.99914 0.98501 1.21150 0.94929 0.96282 0.97699 1.21663 0.99755 0.96519 1.00289 1.18797 0.89637 0.95830 0.92687 0.96117 1.21194 1.06730 1.15264 1.10493 0.93665 1.25416 0.97044 0.95749 0.99027 1.70055 1.15154 1.29113 1.41024 0.86043 0.78320 0.79054 0.81161 1.20742 1.21647 1.19635 1.21721 0.98087 0.98150 0.94186 0.92345 1.21694 0.95904 0.99323 0.98544 1.22158 0.95700 1.02257 0.98327 1.22760 1.00706 0.92584 0.86355 1.87841 1.23306 1.69806 1.51960 1.22393 0.79116 0.98670 0.98859 0.94661 0.94408 0.95186 0.93342 0.93845 0.93359 0.93487 0.93584 0.91222 0.93268 0.91373 0.88985 0.93580 0.87147 0.95351 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 8.06 71.98 0.58 -4.17 16 2 C -0.08 -3.42 2.55 -10.79 -0.03 -3.45 16 3 C -0.13 -4.75 8.63 71.98 0.62 -4.13 16 4 C 0.05 2.29 1.30 -11.54 -0.01 2.27 16 5 H 0.02 1.10 7.28 -2.38 -0.02 1.09 16 6 C -0.50 -25.58 4.88 25.60 0.12 -25.46 16 7 H 0.05 2.36 7.70 -2.91 -0.02 2.33 16 8 C 0.03 1.40 4.45 84.65 0.38 1.78 16 9 N -0.91 -51.08 11.73 21.45 0.25 -50.83 16 10 Si 0.93 43.15 29.54 68.60 2.03 45.18 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 C -0.10 -4.10 1.80 -10.70 -0.02 -4.12 16 15 H 0.06 2.38 6.47 -2.39 -0.02 2.36 16 16 C -0.12 -3.87 4.96 30.71 0.15 -3.72 16 17 C -0.15 -3.91 6.14 30.68 0.19 -3.72 16 18 C 0.05 1.48 6.84 72.01 0.49 1.97 16 19 O -0.41 -15.19 10.77 -148.98 -1.60 -16.80 16 20 C 0.09 3.55 5.78 72.01 0.42 3.96 16 21 H 0.03 1.73 6.68 -2.39 -0.02 1.71 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 24 H 0.05 1.86 6.35 -2.38 -0.02 1.85 16 25 H 0.04 1.82 6.90 -2.39 -0.02 1.80 16 26 H 0.05 1.71 6.61 -2.39 -0.02 1.69 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 29 H 0.07 2.18 6.58 -2.39 -0.02 2.17 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.08 3.63 7.22 -2.39 -0.02 3.61 16 Total: -1.00 -56.32 272.02 4.59 -51.73 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.02 Total: 9.50 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 2.89 Total: -38.78 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.25 Total: -50.83 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.60 Total: -16.80 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -56.32 4.59 -51.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.078 kcal (2) G-P(sol) polarization free energy of solvation -56.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds