Wall clock time and date at job start Mon Mar 30 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47523 * 2 1 4 4 H 1.09004 * 109.46806 * 304.75591 * 3 2 1 5 5 C 1.50698 * 109.46975 * 184.75814 * 3 2 1 6 6 H 1.08004 * 119.99570 * 239.99662 * 5 3 2 7 7 C 1.37871 * 120.00569 * 59.99792 * 5 3 2 8 8 N 1.31518 * 119.99789 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00542 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47123 * 119.99983 * 9 7 5 12 12 H 1.48496 * 109.47598 * 240.00463 * 9 7 5 13 13 C 1.52996 * 109.47029 * 64.75353 * 3 2 1 14 14 H 1.09000 * 109.58975 * 306.02898 * 13 3 2 15 15 C 1.54200 * 109.58908 * 185.74003 * 13 3 2 16 16 C 1.46279 * 112.07822 * 162.25941 * 15 13 3 17 17 C 1.54207 * 112.06528 * 60.89585 * 16 15 13 18 18 C 1.50405 * 108.77405 * 282.20252 * 17 16 15 19 19 O 1.44188 * 112.78314 * 92.57679 * 18 17 16 20 20 C 1.44194 * 116.92059 * 318.47540 * 19 18 17 21 21 H 1.09000 * 109.46791 * 294.09558 * 1 2 3 22 22 H 1.09005 * 109.46858 * 54.08594 * 1 2 3 23 23 H 1.08994 * 109.47276 * 174.08742 * 1 2 3 24 24 H 1.09003 * 109.47030 * 239.99691 * 2 1 3 25 25 H 1.09004 * 109.46931 * 119.99824 * 2 1 3 26 26 H 0.97000 * 120.00502 * 179.97438 * 8 7 5 27 27 H 1.08998 * 108.96061 * 41.58903 * 15 13 3 28 28 H 1.09001 * 108.95949 * 282.93283 * 15 13 3 29 29 H 1.09004 * 108.96194 * 181.56113 * 16 15 13 30 30 H 1.08992 * 108.96284 * 300.23016 * 16 15 13 31 31 H 1.09000 * 109.58538 * 41.99409 * 17 16 15 32 32 H 1.09003 * 109.58728 * 162.41425 * 17 16 15 33 33 H 1.09003 * 108.82197 * 331.72310 * 18 17 16 34 34 H 1.09005 * 108.73802 * 213.36899 * 18 17 16 35 35 H 1.09008 * 108.81887 * 197.62430 * 20 19 18 36 36 H 1.08999 * 108.73557 * 79.26717 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6088 1.9803 -0.8444 5 6 3.5425 1.4440 -0.1179 6 1 4.1446 1.8896 0.6601 7 6 4.1483 0.8765 -1.2187 8 7 3.4149 0.3342 -2.1662 9 14 6.0105 0.8789 -1.3651 10 1 6.5996 1.5456 -0.1760 11 1 6.5028 -0.5200 -1.4423 12 1 6.4096 1.6126 -2.5929 13 6 1.6301 2.1284 1.3047 14 1 0.5531 2.0344 1.4442 15 6 2.0157 3.6203 1.2478 16 6 1.3021 4.4113 2.2502 17 6 1.6147 3.9445 3.6864 18 6 0.8281 2.6945 3.9710 19 8 1.5648 1.4913 3.6734 20 6 2.3463 1.4872 2.4616 21 1 -0.3633 0.4196 0.9381 22 1 -0.3633 0.6028 -0.8324 23 1 -0.3633 -1.0221 -0.1059 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8410 -0.0648 -2.9409 27 1 1.7810 4.0092 0.2570 28 1 3.0880 3.7157 1.4190 29 1 1.5907 5.4573 2.1471 30 1 0.2302 4.3222 2.0743 31 1 2.6803 3.7347 3.7786 32 1 1.3310 4.7238 4.3938 33 1 -0.0818 2.7072 3.3710 34 1 0.5530 2.6865 5.0258 35 1 2.5842 0.4561 2.2000 36 1 3.2758 2.0270 2.6425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260638317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:55 Heat of formation + Delta-G solvation = -73.766939 kcal Electronic energy + Delta-G solvation = -15365.042645 eV Core-core repulsion = 13041.238194 eV Total energy + Delta-G solvation = -2323.804451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11662 -35.51866 -34.02200 -31.89559 -30.64509 -27.50386 -25.83093 -24.77051 -22.92388 -20.63759 -20.10537 -18.42762 -16.53305 -15.73759 -15.61444 -14.47958 -14.33028 -13.73773 -13.29183 -13.04437 -12.74049 -12.54202 -12.09654 -11.96505 -11.37082 -11.16040 -11.06810 -10.77130 -10.54687 -10.48269 -10.31465 -10.01554 -9.96010 -9.75512 -9.22992 -8.96476 -8.91865 -8.46978 -8.25410 -5.96038 -4.02237 3.29904 3.38705 3.41843 4.40594 4.45212 5.09186 5.17570 5.32892 5.36150 5.60644 5.76426 5.92176 5.99786 6.09807 6.21353 6.28043 6.33231 6.34192 6.39413 6.54457 6.59454 6.68316 6.77618 6.92495 7.00700 7.09349 7.11208 7.33089 7.51702 7.76934 7.90357 8.01503 8.19449 8.49169 9.01697 9.62591 11.09062 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.010845 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.203804 B = 2581.136778 C = 2967.123985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.058 3.942 4 H 0.027 0.973 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 C -0.105 4.105 14 H 0.056 0.944 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.154 4.154 18 C 0.067 3.933 19 O -0.407 6.407 20 C 0.076 3.924 21 H 0.037 0.963 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.093 0.907 25 H 0.035 0.965 26 H 0.258 0.742 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 4.786 7.639 9.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.039 3.961 4 H 0.045 0.955 5 C -0.546 4.546 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.124 4.124 14 H 0.075 0.925 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.191 4.191 18 C -0.010 4.010 19 O -0.328 6.328 20 C 0.001 3.999 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.129 4.550 7.576 9.755 hybrid contribution 1.063 0.268 -0.418 1.174 sum -3.066 4.818 7.158 9.157 Atomic orbital electron populations 1.21858 0.99605 0.99166 0.99767 1.21683 0.91451 1.00558 1.02261 1.18720 0.95475 0.91620 0.90262 0.95453 1.21259 0.91471 1.36810 1.05073 0.92533 1.24962 0.97642 0.95465 0.95909 1.69890 1.34533 1.38846 1.09523 0.86648 0.86465 0.77644 0.77910 1.19853 1.21138 1.21210 1.21510 0.98495 0.94247 0.98123 0.92528 1.20592 1.00435 0.95635 0.98249 1.20710 1.00593 0.99431 0.94683 1.21943 1.01851 0.97890 0.97452 1.22134 0.94180 0.85114 0.99561 1.88195 1.65217 1.35940 1.43406 1.22549 0.92202 1.02736 0.82392 0.94444 0.93933 0.94969 0.88912 0.94665 0.93187 0.92158 0.92024 0.92833 0.92679 0.90887 0.91560 0.93748 0.90906 0.88440 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.52 37.16 0.35 -2.60 16 2 C -0.12 -2.85 5.11 -26.73 -0.14 -2.99 16 3 C 0.06 1.38 1.49 -91.77 -0.14 1.24 16 4 H 0.03 0.72 8.03 -51.93 -0.42 0.31 16 5 C -0.51 -13.24 7.29 -34.44 -0.25 -13.50 16 6 H 0.06 1.46 6.33 -52.48 -0.33 1.13 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 8 N -0.89 -24.95 11.30 55.43 0.63 -24.32 16 9 Si 0.88 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.11 -2.13 1.51 -91.29 -0.14 -2.26 16 14 H 0.06 1.13 5.44 -51.93 -0.28 0.84 16 15 C -0.11 -2.05 4.27 -29.30 -0.13 -2.18 16 16 C -0.12 -1.75 5.33 -29.30 -0.16 -1.90 16 17 C -0.15 -2.17 5.61 -27.39 -0.15 -2.32 16 18 C 0.07 1.02 6.26 35.86 0.22 1.24 16 19 O -0.41 -7.72 10.88 -35.23 -0.38 -8.10 16 20 C 0.08 1.53 4.71 35.87 0.17 1.70 16 21 H 0.04 0.70 6.72 -51.93 -0.35 0.36 16 22 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 2.45 5.96 -51.93 -0.31 2.14 16 25 H 0.03 0.81 6.22 -51.93 -0.32 0.49 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 28 H 0.06 1.19 7.00 -51.93 -0.36 0.83 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.79 7.56 -51.93 -0.39 0.40 16 31 H 0.07 1.11 7.15 -51.93 -0.37 0.74 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.67 6.68 -51.93 -0.35 0.33 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 2.13 5.66 -51.92 -0.29 1.83 16 36 H 0.04 0.85 6.16 -51.93 -0.32 0.53 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -27.22 265.29 -6.99 -34.20 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.76 Total: 0.22 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -0.44 Total: -22.00 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.38 Total: -8.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.22 -6.99 -34.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.564 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds