Wall clock time and date at job start Mon Mar 30 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47523 * 2 1 4 4 H 1.09004 * 109.46806 * 304.75591 * 3 2 1 5 5 C 1.50698 * 109.46975 * 184.75814 * 3 2 1 6 6 H 1.08004 * 119.99570 * 239.99662 * 5 3 2 7 7 C 1.37871 * 120.00569 * 59.99792 * 5 3 2 8 8 N 1.31518 * 119.99789 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00542 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46926 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47123 * 119.99983 * 9 7 5 12 12 H 1.48496 * 109.47598 * 240.00463 * 9 7 5 13 13 C 1.52996 * 109.47029 * 64.75353 * 3 2 1 14 14 H 1.09000 * 109.58975 * 306.02898 * 13 3 2 15 15 C 1.54200 * 109.58908 * 185.74003 * 13 3 2 16 16 C 1.46279 * 112.07822 * 162.25941 * 15 13 3 17 17 C 1.54207 * 112.06528 * 60.89585 * 16 15 13 18 18 C 1.50405 * 108.77405 * 282.20252 * 17 16 15 19 19 O 1.44188 * 112.78314 * 92.57679 * 18 17 16 20 20 C 1.44194 * 116.92059 * 318.47540 * 19 18 17 21 21 H 1.09000 * 109.46791 * 294.09558 * 1 2 3 22 22 H 1.09005 * 109.46858 * 54.08594 * 1 2 3 23 23 H 1.08994 * 109.47276 * 174.08742 * 1 2 3 24 24 H 1.09003 * 109.47030 * 239.99691 * 2 1 3 25 25 H 1.09004 * 109.46931 * 119.99824 * 2 1 3 26 26 H 0.97000 * 120.00502 * 179.97438 * 8 7 5 27 27 H 1.08998 * 108.96061 * 41.58903 * 15 13 3 28 28 H 1.09001 * 108.95949 * 282.93283 * 15 13 3 29 29 H 1.09004 * 108.96194 * 181.56113 * 16 15 13 30 30 H 1.08992 * 108.96284 * 300.23016 * 16 15 13 31 31 H 1.09000 * 109.58538 * 41.99409 * 17 16 15 32 32 H 1.09003 * 109.58728 * 162.41425 * 17 16 15 33 33 H 1.09003 * 108.82197 * 331.72310 * 18 17 16 34 34 H 1.09005 * 108.73802 * 213.36899 * 18 17 16 35 35 H 1.09008 * 108.81887 * 197.62430 * 20 19 18 36 36 H 1.08999 * 108.73557 * 79.26717 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6088 1.9803 -0.8444 5 6 3.5425 1.4440 -0.1179 6 1 4.1446 1.8896 0.6601 7 6 4.1483 0.8765 -1.2187 8 7 3.4149 0.3342 -2.1662 9 14 6.0105 0.8789 -1.3651 10 1 6.5996 1.5456 -0.1760 11 1 6.5028 -0.5200 -1.4423 12 1 6.4096 1.6126 -2.5929 13 6 1.6301 2.1284 1.3047 14 1 0.5531 2.0344 1.4442 15 6 2.0157 3.6203 1.2478 16 6 1.3021 4.4113 2.2502 17 6 1.6147 3.9445 3.6864 18 6 0.8281 2.6945 3.9710 19 8 1.5648 1.4913 3.6734 20 6 2.3463 1.4872 2.4616 21 1 -0.3633 0.4196 0.9381 22 1 -0.3633 0.6028 -0.8324 23 1 -0.3633 -1.0221 -0.1059 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8410 -0.0648 -2.9409 27 1 1.7810 4.0092 0.2570 28 1 3.0880 3.7157 1.4190 29 1 1.5907 5.4573 2.1471 30 1 0.2302 4.3222 2.0743 31 1 2.6803 3.7347 3.7786 32 1 1.3310 4.7238 4.3938 33 1 -0.0818 2.7072 3.3710 34 1 0.5530 2.6865 5.0258 35 1 2.5842 0.4561 2.2000 36 1 3.2758 2.0270 2.6425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260638317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:55 Heat of formation + Delta-G solvation = -88.750893 kcal Electronic energy + Delta-G solvation = -15365.692398 eV Core-core repulsion = 13041.238194 eV Total energy + Delta-G solvation = -2324.454204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60593 -37.22263 -35.42935 -33.84637 -32.21808 -29.13006 -27.51394 -26.30274 -24.73257 -22.23382 -21.44867 -20.19441 -18.26510 -17.30156 -17.21642 -16.36637 -15.75493 -15.30314 -14.86805 -14.53722 -14.42094 -14.00679 -13.66242 -13.56754 -13.03948 -12.97432 -12.73351 -12.55255 -12.27508 -12.00156 -11.86231 -11.75562 -11.40605 -11.28996 -10.98357 -10.73987 -10.60673 -10.31599 -10.12992 -8.03011 -6.14565 1.39496 1.43069 1.52341 2.45718 3.01146 3.24779 3.85264 3.95325 4.10981 4.21946 4.32218 4.50216 4.59369 4.66875 4.70371 4.81749 4.83192 4.90422 4.96800 5.05354 5.19107 5.23894 5.30799 5.36905 5.39865 5.45186 5.48821 5.57921 5.62965 5.75287 6.03407 6.18629 6.43467 6.53451 6.97065 7.52712 9.01145 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.010845 C = 0.009434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.203804 B = 2581.136778 C = 2967.123985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.058 3.942 4 H -0.004 1.004 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.943 3.057 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.096 4.096 14 H 0.063 0.937 15 C -0.106 4.106 16 C -0.116 4.116 17 C -0.148 4.148 18 C 0.056 3.944 19 O -0.421 6.421 20 C 0.089 3.911 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.032 0.968 26 H 0.257 0.743 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 5.835 9.243 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.039 3.961 4 H 0.014 0.986 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.115 4.115 14 H 0.082 0.918 15 C -0.143 4.143 16 C -0.153 4.153 17 C -0.186 4.186 18 C -0.020 4.020 19 O -0.341 6.341 20 C 0.014 3.986 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.598 5.608 9.194 11.710 hybrid contribution 1.168 -0.047 -0.891 1.470 sum -3.430 5.561 8.302 10.565 Atomic orbital electron populations 1.21734 0.96897 1.00377 1.00397 1.21547 0.93902 0.99768 1.00469 1.18648 0.94279 0.91989 0.91140 0.98607 1.21539 0.92802 1.36003 1.04735 0.92707 1.25660 1.01500 0.95539 0.95912 1.70024 1.35967 1.39777 1.09976 0.85737 0.81926 0.77495 0.77897 1.19173 1.21068 1.21083 1.21357 0.98765 0.95245 0.96119 0.91847 1.20536 1.00051 0.94770 0.98952 1.20675 1.00637 0.99805 0.94189 1.21922 1.00842 0.98324 0.97488 1.22467 0.93885 0.84235 1.01388 1.88169 1.65388 1.38324 1.42252 1.22219 0.92300 1.01114 0.82986 0.92957 0.94244 0.93299 0.92161 0.94906 0.93361 0.93537 0.93468 0.90844 0.91655 0.92225 0.88065 0.93375 0.88075 0.90715 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 9.52 71.98 0.69 -4.72 16 2 C -0.12 -5.66 5.11 30.59 0.16 -5.50 16 3 C 0.06 2.82 1.49 -11.54 -0.02 2.80 16 4 H 0.00 -0.23 8.03 -2.38 -0.02 -0.25 16 5 C -0.51 -27.21 7.29 25.60 0.19 -27.02 16 6 H 0.05 2.87 6.33 -2.91 -0.02 2.85 16 7 C 0.01 0.65 5.29 84.65 0.45 1.10 16 8 N -0.92 -52.77 11.30 21.45 0.24 -52.53 16 9 Si 0.94 43.62 29.54 68.60 2.03 45.65 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 C -0.10 -3.85 1.51 -11.23 -0.02 -3.87 16 14 H 0.06 2.44 5.44 -2.39 -0.01 2.42 16 15 C -0.11 -3.80 4.27 28.93 0.12 -3.67 16 16 C -0.12 -3.14 5.33 28.93 0.15 -2.99 16 17 C -0.15 -3.68 5.61 30.16 0.17 -3.51 16 18 C 0.06 1.53 6.26 71.14 0.45 1.97 16 19 O -0.42 -15.18 10.88 -148.98 -1.62 -16.80 16 20 C 0.09 3.56 4.71 71.15 0.33 3.89 16 21 H 0.05 1.89 6.72 -2.39 -0.02 1.87 16 22 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.06 3.27 5.96 -2.39 -0.01 3.26 16 25 H 0.03 1.54 6.22 -2.38 -0.01 1.52 16 26 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 27 H 0.05 1.77 7.93 -2.39 -0.02 1.75 16 28 H 0.05 1.81 7.00 -2.39 -0.02 1.79 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.67 7.56 -2.39 -0.02 1.65 16 31 H 0.06 1.67 7.15 -2.39 -0.02 1.65 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.29 6.68 -2.39 -0.02 1.27 16 34 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 3.29 5.66 -2.38 -0.01 3.28 16 36 H 0.04 1.46 6.16 -2.39 -0.01 1.44 16 Total: -1.00 -58.61 265.29 4.36 -54.25 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.04 Total: 10.95 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 2.67 Total: -41.51 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.62 Total: -16.80 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -58.61 4.36 -54.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.504 kcal (2) G-P(sol) polarization free energy of solvation -58.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds