Wall clock time and date at job start Mon Mar 30 2020 02:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47453 * 2 1 4 4 H 1.09004 * 109.47115 * 183.81960 * 3 2 1 5 5 C 1.50698 * 109.47298 * 63.82333 * 3 2 1 6 6 H 1.08004 * 119.99934 * 244.05383 * 5 3 2 7 7 C 1.37880 * 120.00181 * 64.04334 * 5 3 2 8 8 N 1.31510 * 120.00227 * 194.79140 * 7 5 3 9 9 Si 1.86804 * 119.99721 * 14.79983 * 7 5 3 10 10 H 1.48495 * 109.47274 * 91.34985 * 9 7 5 11 11 H 1.48505 * 109.46857 * 211.35168 * 9 7 5 12 12 H 1.48498 * 109.47038 * 331.34970 * 9 7 5 13 13 C 1.53002 * 109.47142 * 303.81820 * 3 2 1 14 14 H 1.08999 * 108.83589 * 61.01503 * 13 3 2 15 15 C 1.46284 * 108.93399 * 179.66911 * 13 3 2 16 16 C 1.54201 * 111.92174 * 182.15757 * 15 13 3 17 17 C 1.50674 * 109.03799 * 282.35442 * 16 15 13 18 18 C 1.53824 * 112.39097 * 90.43414 * 17 16 15 19 19 O 1.43988 * 113.40941 * 317.87754 * 18 17 16 20 20 C 1.40319 * 116.58517 * 317.89203 * 19 18 17 21 21 H 1.08996 * 109.47607 * 182.17084 * 1 2 3 22 22 H 1.09009 * 109.46766 * 302.17091 * 1 2 3 23 23 H 1.08996 * 109.47055 * 62.16503 * 1 2 3 24 24 H 1.09007 * 109.47133 * 239.99636 * 2 1 3 25 25 H 1.09001 * 109.47386 * 120.00215 * 2 1 3 26 26 H 0.96997 * 120.00200 * 180.02562 * 8 7 5 27 27 H 1.08996 * 108.98434 * 302.76589 * 15 13 3 28 28 H 1.09003 * 108.97571 * 61.55806 * 15 13 3 29 29 H 1.09004 * 109.53504 * 42.31267 * 16 15 13 30 30 H 1.09004 * 109.53909 * 162.55184 * 16 15 13 31 31 H 1.09002 * 108.92910 * 329.68208 * 17 16 15 32 32 H 1.08995 * 108.84269 * 211.12416 * 17 16 15 33 33 H 1.09003 * 108.69233 * 196.86500 * 18 17 16 34 34 H 1.09001 * 108.69511 * 78.89588 * 18 17 16 35 35 H 1.08994 * 109.59835 * 335.27775 * 20 19 18 36 36 H 1.08998 * 109.59875 * 214.80207 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1279 1.4432 -0.0685 5 6 1.6166 2.1250 1.2751 6 1 0.9386 2.9650 1.2385 7 6 2.0945 1.6772 2.4884 8 7 1.5188 2.0646 3.6055 9 14 3.5601 0.5203 2.5454 10 1 4.8115 1.3118 2.6583 11 1 3.4354 -0.3790 3.7205 12 1 3.5985 -0.2916 1.3026 13 6 1.4532 2.1909 -1.1985 14 1 0.3668 2.1996 -1.1103 15 6 1.9418 3.5697 -1.1826 16 6 1.3482 4.4041 -2.3356 17 6 2.0678 4.0585 -3.6135 18 6 1.3930 2.9027 -4.3718 19 8 0.9611 1.8303 -3.5134 20 6 1.8442 1.4493 -2.4917 21 1 -0.3634 -1.0269 0.0389 22 1 -0.3633 0.5472 0.8700 23 1 -0.3633 0.4798 -0.9087 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.8552 1.7498 4.4590 27 1 1.6690 4.0316 -0.2338 28 1 3.0280 3.5619 -1.2734 29 1 0.2871 4.1780 -2.4404 30 1 1.4766 5.4651 -2.1214 31 1 3.0929 3.7738 -3.3762 32 1 2.0865 4.9386 -4.2561 33 1 2.0986 2.5042 -5.1008 34 1 0.5267 3.2937 -4.9054 35 1 2.8635 1.7151 -2.7715 36 1 1.7753 0.3735 -2.3312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260638319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:57 Heat of formation + Delta-G solvation = -65.679256 kcal Electronic energy + Delta-G solvation = -15356.364558 eV Core-core repulsion = 13032.910815 eV Total energy + Delta-G solvation = -2323.453743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29241 -36.07224 -33.94355 -32.04015 -30.81338 -27.41878 -26.29729 -24.79141 -22.94381 -20.97111 -20.00718 -18.48241 -16.82939 -16.05663 -15.71191 -14.85220 -14.26262 -13.78199 -13.54841 -13.21898 -12.92110 -12.57586 -12.43762 -11.89063 -11.72790 -11.42172 -10.96134 -10.76101 -10.51301 -10.26666 -10.11686 -10.09786 -9.98222 -9.68042 -9.50370 -9.28749 -8.82994 -8.59621 -8.27402 -6.03744 -3.96148 3.31338 3.41243 3.43777 4.22495 4.48252 4.96619 5.14926 5.28440 5.35166 5.49131 5.65539 5.74786 5.83995 5.95807 5.99016 6.14848 6.20536 6.27265 6.33432 6.40550 6.42728 6.64780 6.78952 6.81369 6.90082 6.98635 7.17651 7.21488 7.38538 7.49420 7.55163 7.84089 7.88766 8.59540 9.03762 9.63006 11.09294 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.039298 B = 0.010251 C = 0.009480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.340239 B = 2730.706888 C = 2952.835704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.021 3.979 4 H 0.018 0.982 5 C -0.505 4.505 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.861 3.139 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.252 1.252 13 C -0.097 4.097 14 H 0.074 0.926 15 C -0.107 4.107 16 C -0.120 4.120 17 C -0.152 4.152 18 C 0.065 3.935 19 O -0.387 6.387 20 C 0.062 3.938 21 H 0.025 0.975 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.030 0.970 25 H 0.051 0.949 26 H 0.261 0.739 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 0.709 -12.612 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.002 3.998 4 H 0.036 0.964 5 C -0.542 4.542 6 H 0.092 0.908 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.689 3.311 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.177 1.177 13 C -0.116 4.116 14 H 0.093 0.907 15 C -0.144 4.144 16 C -0.157 4.157 17 C -0.190 4.190 18 C -0.011 4.011 19 O -0.306 6.306 20 C -0.014 4.014 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.190 0.608 -12.435 12.507 hybrid contribution 1.197 -0.448 0.313 1.316 sum 2.387 0.160 -12.122 12.356 Atomic orbital electron populations 1.21690 0.96574 0.98949 1.02367 1.21967 0.96157 0.99042 0.98648 1.19133 0.94986 0.91678 0.94021 0.96390 1.20925 1.28469 1.16222 0.88597 0.90840 1.24945 0.96464 0.95718 0.95690 1.69975 1.39637 1.46132 0.97778 0.87264 0.84139 0.81661 0.78083 1.20988 1.21730 1.17661 1.20578 1.01806 0.94913 0.94276 0.90744 1.20639 0.99229 0.95926 0.98626 1.21371 1.00437 0.99413 0.94506 1.21962 1.00522 0.98288 0.98187 1.22831 0.98962 0.87618 0.91701 1.87422 1.46407 1.51753 1.45020 1.22746 0.92036 0.99519 0.87108 0.95553 0.91149 0.93519 0.95193 0.93072 0.92924 0.90031 0.93445 0.91667 0.92514 0.91958 0.91741 0.94153 0.90298 0.94176 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.21 37.16 0.34 -2.50 16 2 C -0.12 -2.59 4.54 -26.73 -0.12 -2.72 16 3 C 0.02 0.47 1.20 -91.77 -0.11 0.36 16 4 H 0.02 0.42 6.88 -51.93 -0.36 0.06 16 5 C -0.50 -13.48 6.99 -34.44 -0.24 -13.72 16 6 H 0.07 2.14 7.01 -52.48 -0.37 1.77 16 7 C 0.07 2.06 5.34 -17.82 -0.10 1.96 16 8 N -0.90 -27.00 13.96 55.43 0.77 -26.22 16 9 Si 0.86 21.16 25.79 -169.99 -4.38 16.77 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.25 -5.83 5.39 56.52 0.30 -5.52 16 13 C -0.10 -1.91 1.02 -93.23 -0.09 -2.00 16 14 H 0.07 1.57 6.41 -51.93 -0.33 1.24 16 15 C -0.11 -1.98 4.40 -29.30 -0.13 -2.11 16 16 C -0.12 -1.83 5.61 -27.27 -0.15 -1.98 16 17 C -0.15 -1.99 5.33 -27.47 -0.15 -2.14 16 18 C 0.07 0.87 6.67 37.59 0.25 1.13 16 19 O -0.39 -6.52 10.17 -33.68 -0.34 -6.86 16 20 C 0.06 1.08 5.65 37.74 0.21 1.30 16 21 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.07 1.62 7.27 -51.92 -0.38 1.25 16 23 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 24 H 0.03 0.57 6.16 -51.93 -0.32 0.25 16 25 H 0.05 1.17 4.76 -51.93 -0.25 0.93 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.08 1.71 6.33 -51.93 -0.33 1.38 16 28 H 0.05 0.86 7.59 -51.93 -0.39 0.47 16 29 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.84 6.83 -51.93 -0.35 0.48 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.65 6.98 -51.93 -0.36 0.29 16 36 H 0.09 1.51 5.58 -51.93 -0.29 1.22 16 LS Contribution 260.62 15.07 3.93 3.93 Total: -1.00 -28.68 260.62 -6.13 -34.81 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.82 Total: 0.00 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -0.28 Total: -22.43 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.34 Total: -6.86 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.38 Total: 16.77 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.68 -6.13 -34.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260638319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.870 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds