Wall clock time and date at job start Mon Mar 30 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47126 * 2 1 4 4 C 1.53002 * 109.46927 * 119.99382 * 2 1 3 5 5 H 1.09005 * 109.46536 * 53.84097 * 4 2 1 6 6 C 1.53002 * 109.47020 * 173.83265 * 4 2 1 7 7 C 1.50704 * 109.47217 * 293.60999 * 6 4 2 8 8 H 1.07995 * 119.99921 * 354.87425 * 7 6 4 9 9 C 1.37872 * 119.99704 * 174.86924 * 7 6 4 10 10 N 1.31510 * 120.00385 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99698 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47087 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46965 * 120.00564 * 11 9 7 14 14 H 1.48498 * 109.47202 * 239.99810 * 11 9 7 15 15 C 1.52995 * 109.47523 * 293.83572 * 4 2 1 16 16 H 1.08999 * 109.89685 * 304.80006 * 15 4 2 17 17 C 1.54382 * 109.83157 * 183.86446 * 15 4 2 18 18 C 1.55306 * 102.25256 * 219.13272 * 17 15 4 19 19 C 1.54944 * 100.94601 * 34.13073 * 18 17 15 20 20 O 1.43243 * 109.82835 * 65.72938 * 15 4 2 21 21 H 1.08998 * 109.47624 * 307.70017 * 1 2 3 22 22 H 1.09003 * 109.46658 * 67.69756 * 1 2 3 23 23 H 1.08993 * 109.46985 * 187.69244 * 1 2 3 24 24 H 1.08990 * 109.47414 * 239.99790 * 2 1 3 25 25 H 1.08999 * 109.46976 * 184.09306 * 3 2 1 26 26 H 1.09001 * 109.46773 * 304.09508 * 3 2 1 27 27 H 1.09000 * 109.46891 * 64.09236 * 3 2 1 28 28 H 1.09001 * 109.46933 * 53.61125 * 6 4 2 29 29 H 1.09000 * 109.47038 * 173.61274 * 6 4 2 30 30 H 0.97004 * 120.00305 * 179.97438 * 10 9 7 31 31 H 1.09006 * 110.84602 * 337.31738 * 17 15 4 32 32 H 1.08997 * 110.84778 * 100.94019 * 17 15 4 33 33 H 1.09007 * 111.12330 * 276.21127 * 18 17 15 34 34 H 1.09000 * 111.16406 * 152.06998 * 18 17 15 35 35 H 1.08999 * 110.31203 * 204.64452 * 19 18 17 36 36 H 1.08998 * 110.39335 * 82.51095 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.5893 -1.7120 1.3062 6 6 3.5621 -0.8568 1.1743 7 6 3.9290 -1.7790 0.0403 8 1 3.1544 -2.2887 -0.5134 9 6 5.2535 -1.9718 -0.2904 10 7 6.1968 -1.3515 0.3841 11 14 5.7083 -3.1155 -1.6956 12 1 4.4725 -3.6868 -2.2887 13 1 6.4489 -2.3542 -2.7336 14 1 6.5652 -4.2142 -1.1821 15 6 1.6604 0.0840 2.4937 16 1 2.0361 1.1034 2.4048 17 6 2.2542 -0.5852 3.7518 18 6 1.1115 -0.4098 4.7889 19 6 -0.1350 -0.5352 3.8772 20 8 0.2361 0.1026 2.6446 21 1 -0.3634 0.6284 0.8131 22 1 -0.3633 0.3900 -0.9508 23 1 -0.3633 -1.0184 0.1376 24 1 1.8933 -0.5138 -0.8899 25 1 3.1275 1.4434 -0.0734 26 1 1.6180 1.9771 -0.8510 27 1 1.7378 1.9347 0.9244 28 1 4.0062 0.1239 1.0034 29 1 3.9370 -1.2670 2.1120 30 1 7.1287 -1.4875 0.1517 31 1 2.4554 -1.6412 3.5712 32 1 3.1564 -0.0674 4.0774 33 1 1.1562 0.5720 5.2604 34 1 1.1331 -1.2031 5.5362 35 1 -0.9857 -0.0233 4.3269 36 1 -0.3743 -1.5843 3.7031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260652540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:59 Heat of formation + Delta-G solvation = -91.251521 kcal Electronic energy + Delta-G solvation = -15150.073712 eV Core-core repulsion = 12825.511072 eV Total energy + Delta-G solvation = -2324.562640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.77933 -37.54210 -34.80086 -33.18757 -31.58364 -29.52172 -27.90240 -26.45420 -23.75970 -22.82380 -22.15728 -19.73734 -18.47605 -17.53307 -16.99309 -16.44058 -15.50733 -15.38941 -15.00302 -14.46205 -14.18138 -13.97352 -13.95959 -13.10560 -13.02164 -12.83979 -12.58958 -12.43884 -12.34690 -12.14724 -12.01922 -11.84692 -11.68784 -11.31566 -11.22128 -11.10961 -10.76564 -10.46201 -10.05095 -8.15971 -6.23144 1.37675 1.39043 1.51133 2.41750 3.03703 3.17554 3.73301 3.88399 4.05796 4.22266 4.26355 4.35540 4.48310 4.52010 4.72051 4.86273 4.91058 4.93932 4.98456 5.00442 5.02922 5.14298 5.17597 5.23612 5.31752 5.40859 5.42288 5.52705 5.66667 5.81394 5.87060 5.95898 6.24184 6.37183 6.91881 7.43733 8.95543 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.034663 B = 0.009309 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.579492 B = 3007.158354 C = 3399.498368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.075 4.075 5 H 0.042 0.958 6 C 0.035 3.965 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.003 3.997 10 N -0.931 5.931 11 Si 0.953 3.047 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.089 3.911 16 H 0.075 0.925 17 C -0.151 4.151 18 C -0.145 4.145 19 C 0.040 3.960 20 O -0.384 6.384 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.002 0.998 29 H -0.004 1.004 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 2.992 5.847 12.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.093 4.093 5 H 0.061 0.939 6 C -0.002 4.002 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.195 4.195 10 N -0.572 5.572 11 Si 0.779 3.221 12 H -0.191 1.191 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.032 3.968 16 H 0.093 0.907 17 C -0.188 4.188 18 C -0.183 4.183 19 C -0.036 4.036 20 O -0.304 6.304 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.021 0.979 29 H 0.014 0.986 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.993 3.095 5.706 12.766 hybrid contribution 1.047 -0.841 -0.653 1.494 sum -9.946 2.254 5.053 11.381 Atomic orbital electron populations 1.21811 0.94213 1.01283 1.01290 1.20930 0.95867 0.95955 0.97332 1.21819 0.99975 0.96092 1.01580 1.21434 0.96538 0.97074 0.94291 0.93902 1.19035 0.90666 0.95479 0.95043 1.21598 0.91841 1.26312 1.16470 0.93038 1.25818 0.96759 0.97721 0.99182 1.70082 1.00258 1.44540 1.42278 0.85574 0.78303 0.78855 0.79404 1.19050 1.20537 1.20506 1.22779 0.80721 0.98803 0.94524 0.90722 1.23125 0.99432 1.01242 0.95034 1.23246 0.93375 1.03828 0.97808 1.23540 0.97983 0.97843 0.84241 1.88440 1.21601 1.79691 1.40627 0.90723 0.93169 0.94195 0.93494 0.94705 0.92224 0.92048 0.97930 0.98571 0.93019 0.91980 0.90778 0.89475 0.88632 0.87946 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.33 71.98 0.60 -3.68 16 2 C -0.08 -3.25 2.60 -10.79 -0.03 -3.28 16 3 C -0.14 -5.05 8.50 71.98 0.61 -4.44 16 4 C -0.07 -3.15 1.36 -10.79 -0.01 -3.17 16 5 H 0.04 1.91 8.12 -2.38 -0.02 1.89 16 6 C 0.03 1.80 4.16 29.85 0.12 1.93 16 7 C -0.52 -29.82 8.23 25.60 0.21 -29.61 16 8 H 0.05 2.90 7.38 -2.91 -0.02 2.88 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -56.40 13.29 21.44 0.28 -56.11 16 11 Si 0.95 44.97 29.54 68.60 2.03 47.00 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 15 C 0.09 3.14 2.69 31.06 0.08 3.23 16 16 H 0.08 2.69 5.99 -2.39 -0.01 2.67 16 17 C -0.15 -4.86 5.29 31.86 0.17 -4.69 16 18 C -0.15 -3.39 7.16 32.05 0.23 -3.16 16 19 C 0.04 0.98 7.78 72.65 0.56 1.54 16 20 O -0.38 -12.19 7.81 -148.98 -1.16 -13.36 16 21 H 0.07 2.41 5.82 -2.39 -0.01 2.39 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.04 1.32 8.12 -2.39 -0.02 1.31 16 24 H 0.05 2.09 7.01 -2.39 -0.02 2.07 16 25 H 0.03 1.45 6.66 -2.39 -0.02 1.43 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 2.07 5.99 -2.39 -0.01 2.06 16 28 H 0.00 0.13 6.42 -2.39 -0.02 0.12 16 29 H 0.00 -0.22 6.59 -2.39 -0.02 -0.23 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.06 2.22 7.36 -2.38 -0.02 2.20 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.62 274.28 5.19 -57.43 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.03 Total: 9.77 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 3.01 Total: -44.73 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.11 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.16 Total: -13.36 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -62.62 5.19 -57.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260652540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.820 kcal (2) G-P(sol) polarization free energy of solvation -62.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds