Wall clock time and date at job start Mon Mar 30 2020 02:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47299 * 2 1 4 4 C 1.53008 * 109.46615 * 119.99954 * 2 1 3 5 5 H 1.08998 * 109.46608 * 181.77987 * 4 2 1 6 6 C 1.52990 * 109.47393 * 61.77367 * 4 2 1 7 7 C 1.50703 * 109.47157 * 65.54375 * 6 4 2 8 8 H 1.08001 * 120.00097 * 355.36937 * 7 6 4 9 9 C 1.37874 * 120.00164 * 175.37466 * 7 6 4 10 10 N 1.31517 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46990 * 89.99861 * 11 9 7 13 13 H 1.48500 * 109.47435 * 209.99606 * 11 9 7 14 14 H 1.48493 * 109.47340 * 330.00179 * 11 9 7 15 15 C 1.52999 * 109.46939 * 301.76916 * 4 2 1 16 16 H 1.09000 * 110.33471 * 307.25985 * 15 4 2 17 17 C 1.54479 * 110.37310 * 185.00401 * 15 4 2 18 18 C 1.54510 * 104.06321 * 217.19451 * 17 15 4 19 19 C 1.54480 * 104.06261 * 359.97438 * 18 17 15 20 20 O 1.44422 * 104.80381 * 23.98022 * 19 18 17 21 21 H 1.09008 * 109.46910 * 60.00442 * 1 2 3 22 22 H 1.08993 * 109.47458 * 300.00485 * 1 2 3 23 23 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47266 * 239.99184 * 2 1 3 25 25 H 1.08998 * 109.47095 * 54.06873 * 3 2 1 26 26 H 1.09002 * 109.46884 * 174.07629 * 3 2 1 27 27 H 1.08998 * 109.47002 * 294.07072 * 3 2 1 28 28 H 1.09004 * 109.47280 * 185.54151 * 6 4 2 29 29 H 1.09002 * 109.47268 * 305.54270 * 6 4 2 30 30 H 0.97001 * 120.00160 * 179.97438 * 10 9 7 31 31 H 1.08998 * 110.50856 * 335.83594 * 17 15 4 32 32 H 1.08996 * 110.51390 * 98.41416 * 17 15 4 33 33 H 1.09000 * 110.51271 * 118.63844 * 18 17 15 34 34 H 1.08995 * 110.51101 * 241.21808 * 18 17 15 35 35 H 1.08997 * 110.37582 * 142.81045 * 19 18 17 36 36 H 1.09001 * 110.37508 * 265.03497 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1294 -0.6937 1.2654 6 6 1.5667 -2.1760 1.2273 7 6 2.2135 -2.8972 0.0728 8 1 2.8347 -2.3537 -0.6236 9 6 2.0120 -4.2508 -0.0944 10 7 1.2557 -4.9128 0.7539 11 14 2.8131 -5.1447 -1.5257 12 1 4.1478 -5.6466 -1.1112 13 1 1.9594 -6.2887 -1.9352 14 1 2.9691 -4.2094 -2.6685 15 6 1.4938 -0.0262 2.4981 16 1 1.7138 1.0409 2.4644 17 6 2.0950 -0.6594 3.7724 18 6 0.9284 -0.6445 4.7854 19 6 -0.2395 -0.0035 4.0034 20 8 0.0709 -0.2439 2.6136 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5140 -0.8899 25 1 1.5926 1.9860 0.8321 26 1 3.1249 1.4442 0.1061 27 1 1.7660 1.9247 -0.9383 28 1 1.8453 -2.6630 2.1618 29 1 0.4831 -2.2039 1.1120 30 1 1.1137 -5.8651 0.6361 31 1 2.4167 -1.6820 3.5754 32 1 2.9294 -0.0614 4.1389 33 1 0.6733 -1.6598 5.0891 34 1 1.1854 -0.0398 5.6550 35 1 -1.1822 -0.4814 4.2698 36 1 -0.2879 1.0669 4.2035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260652543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:02 Heat of formation + Delta-G solvation = -71.145530 kcal Electronic energy + Delta-G solvation = -15256.312637 eV Core-core repulsion = 12932.621859 eV Total energy + Delta-G solvation = -2323.690778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.32419 -35.90763 -32.65624 -31.65337 -30.01978 -27.87544 -26.32404 -24.61099 -22.28849 -21.33024 -20.64336 -18.15138 -16.38754 -15.80889 -14.98322 -14.80046 -14.20219 -13.95203 -13.52656 -13.18686 -12.73246 -12.27624 -11.80863 -11.66466 -11.29527 -11.10304 -11.03572 -10.98616 -10.58168 -10.56232 -10.49861 -10.26928 -9.97411 -9.65442 -9.36077 -9.25280 -8.75778 -8.73949 -8.20228 -5.89242 -3.89538 3.36519 3.43130 3.46354 4.46112 4.53728 5.09729 5.22531 5.37129 5.46071 5.51878 5.67847 5.74420 5.80664 5.86511 6.03985 6.06735 6.12827 6.22547 6.36302 6.38163 6.47726 6.51308 6.65400 6.71819 6.89789 6.95148 7.14966 7.31787 7.39563 7.55771 7.85899 8.03848 8.20717 8.56332 9.18029 9.72678 11.21859 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.010386 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.983399 B = 2695.327149 C = 3187.939802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.148 4.148 4 C -0.073 4.073 5 H 0.064 0.936 6 C 0.032 3.968 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.885 3.115 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.081 3.919 16 H 0.054 0.946 17 C -0.155 4.155 18 C -0.152 4.152 19 C 0.038 3.962 20 O -0.348 6.348 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.018 0.982 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 10.484 4.946 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.091 4.091 5 H 0.083 0.917 6 C -0.005 4.005 7 C -0.551 4.551 8 H 0.071 0.929 9 C -0.144 4.144 10 N -0.535 5.535 11 Si 0.713 3.287 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.200 1.200 15 C 0.024 3.976 16 H 0.072 0.928 17 C -0.193 4.193 18 C -0.190 4.190 19 C -0.039 4.039 20 O -0.267 6.267 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.420 10.248 4.803 11.325 hybrid contribution 0.618 -0.561 -0.529 0.988 sum 0.198 9.687 4.275 10.590 Atomic orbital electron populations 1.21967 0.95379 1.02756 0.99959 1.21000 0.96234 0.93608 0.99275 1.21952 1.00176 0.97931 1.00422 1.21373 0.98376 0.98755 0.90625 0.91743 1.19128 0.97387 0.87485 0.96519 1.21314 1.29430 0.93188 1.11186 0.92853 1.24984 0.95498 0.97768 0.96155 1.69976 1.38660 1.08366 1.36522 0.86710 0.79235 0.79511 0.83221 1.20895 1.21392 1.19979 1.23136 0.81073 0.97404 0.95996 0.92794 1.23072 0.97569 1.03522 0.95134 1.22877 0.96053 1.01702 0.98368 1.23316 0.98365 0.98431 0.83768 1.89319 1.23299 1.90620 1.23475 0.95334 0.91447 0.91597 0.90688 0.93431 0.93516 0.93775 0.96417 0.95251 0.93258 0.89255 0.91815 0.90904 0.91702 0.89944 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.01 37.16 0.30 -2.50 16 2 C -0.08 -1.61 2.57 -90.62 -0.23 -1.84 16 3 C -0.15 -2.33 8.74 37.16 0.32 -2.00 16 4 C -0.07 -1.51 1.59 -90.62 -0.14 -1.65 16 5 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 6 C 0.03 0.81 3.81 -27.89 -0.11 0.70 16 7 C -0.51 -14.41 8.47 -34.44 -0.29 -14.71 16 8 H 0.05 1.46 6.93 -52.49 -0.36 1.10 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 11 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.08 1.45 2.58 -25.96 -0.07 1.38 16 16 H 0.05 0.88 6.33 -51.93 -0.33 0.55 16 17 C -0.16 -2.56 6.45 -25.16 -0.16 -2.72 16 18 C -0.15 -2.20 7.09 -25.16 -0.18 -2.38 16 19 C 0.04 0.57 7.63 37.93 0.29 0.86 16 20 O -0.35 -6.55 7.22 -35.23 -0.25 -6.81 16 21 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 22 H 0.07 1.27 5.45 -51.93 -0.28 0.99 16 23 H 0.07 1.47 6.36 -51.93 -0.33 1.14 16 24 H 0.07 1.60 6.85 -51.93 -0.36 1.25 16 25 H 0.05 0.71 6.64 -51.93 -0.34 0.36 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.02 0.49 6.25 -51.93 -0.32 0.16 16 29 H 0.03 0.82 5.77 -51.93 -0.30 0.52 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.71 6.08 -51.93 -0.32 1.39 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -29.96 272.00 -6.69 -36.65 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.89 Total: -1.11 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -0.37 Total: -23.31 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.46 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -0.25 Total: -6.81 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.96 -6.69 -36.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260652543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.493 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds