Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46846 * 2 1 4 4 C 1.52999 * 109.46896 * 240.00074 * 2 1 3 5 5 H 1.09007 * 109.46864 * 180.18881 * 4 2 1 6 6 C 1.50697 * 109.47203 * 300.18833 * 4 2 1 7 7 H 1.08000 * 120.00096 * 114.45584 * 6 4 2 8 8 C 1.37872 * 120.00094 * 294.45202 * 6 4 2 9 9 N 1.31519 * 120.00071 * 1.45202 * 8 6 4 10 10 Si 1.86801 * 120.00009 * 181.44775 * 8 6 4 11 11 H 1.48503 * 109.46948 * 90.00231 * 10 8 6 12 12 H 1.48506 * 109.47114 * 209.99825 * 10 8 6 13 13 H 1.48495 * 109.47039 * 330.00107 * 10 8 6 14 14 C 1.52998 * 109.47099 * 60.19359 * 4 2 1 15 15 H 1.09000 * 109.48518 * 53.91071 * 14 4 2 16 16 C 1.53099 * 109.48017 * 173.93301 * 14 4 2 17 17 C 1.53178 * 109.16403 * 177.57835 * 16 14 4 18 18 C 1.53175 * 109.04535 * 303.03571 * 17 16 14 19 19 C 1.53089 * 109.16286 * 56.97272 * 18 17 16 20 20 O 1.42903 * 109.41732 * 302.38863 * 19 18 17 21 21 H 1.09007 * 109.47254 * 48.58546 * 1 2 3 22 22 H 1.09001 * 109.46966 * 168.58083 * 1 2 3 23 23 H 1.08999 * 109.47318 * 288.58458 * 1 2 3 24 24 H 1.08997 * 109.47142 * 120.00173 * 2 1 3 25 25 H 1.08998 * 109.47125 * 66.63001 * 3 2 1 26 26 H 1.09005 * 109.47074 * 186.63239 * 3 2 1 27 27 H 1.08996 * 109.47356 * 306.62940 * 3 2 1 28 28 H 0.97003 * 119.99937 * 179.97438 * 9 8 6 29 29 H 1.09009 * 109.51865 * 297.49135 * 16 14 4 30 30 H 1.08996 * 109.52581 * 57.67626 * 16 14 4 31 31 H 1.08997 * 109.54515 * 183.15835 * 17 16 14 32 32 H 1.09004 * 109.53303 * 62.89873 * 17 16 14 33 33 H 1.09003 * 109.51669 * 297.06573 * 18 17 16 34 34 H 1.08994 * 109.52439 * 176.88036 * 18 17 16 35 35 H 1.09009 * 109.47663 * 182.41115 * 19 18 17 36 36 H 1.08997 * 109.48083 * 62.37986 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1300 -0.7242 -1.2476 6 6 1.5338 -2.1407 -1.2516 7 1 0.8415 -2.4658 -2.0141 8 6 1.9546 -3.0242 -0.2805 9 7 2.7755 -2.6207 0.6646 10 14 1.3589 -4.7945 -0.3070 11 1 2.2949 -5.6198 -1.1120 12 1 1.3047 -5.3194 1.0812 13 1 0.0035 -4.8516 -0.9110 14 6 1.5339 0.0028 -2.4984 15 1 1.8083 1.0564 -2.4442 16 6 2.1651 -0.6256 -3.7437 17 6 1.6077 0.0643 -4.9926 18 6 0.0807 -0.0562 -4.9908 19 6 -0.4697 0.5503 -3.6974 20 8 0.1119 -0.1161 -2.5750 21 1 -0.3634 0.6798 -0.7707 22 1 -0.3633 -1.0073 -0.2035 23 1 -0.3634 0.3275 0.9741 24 1 1.8934 -0.5138 0.8899 25 1 1.7767 1.9209 0.9433 26 1 3.1235 1.4449 -0.1187 27 1 1.5830 1.9895 -0.8247 28 1 3.0712 -3.2423 1.3480 29 1 3.2469 -0.4965 -3.7083 30 1 1.9250 -1.6883 -3.7770 31 1 2.0103 -0.4155 -5.8846 32 1 1.8903 1.1171 -4.9842 33 1 -0.2016 -1.1074 -5.0492 34 1 -0.3280 0.4798 -5.8472 35 1 -1.5527 0.4289 -3.6711 36 1 -0.2217 1.6110 -3.6590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260694456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = -73.799529 kcal Electronic energy + Delta-G solvation = -15559.684878 eV Core-core repulsion = 13235.879014 eV Total energy + Delta-G solvation = -2323.805864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88719 -35.43547 -32.92655 -31.85691 -30.55511 -26.98091 -26.01107 -24.12038 -23.18701 -21.52247 -19.60744 -18.30696 -16.37703 -15.43791 -14.65475 -14.38298 -14.17016 -13.81866 -13.40979 -13.02264 -12.47844 -12.22439 -12.04080 -11.61428 -11.17518 -11.05845 -10.82507 -10.77783 -10.57880 -10.46890 -10.32512 -10.03764 -9.74085 -9.57875 -9.39737 -8.86053 -8.61599 -8.24009 -8.18025 -5.86907 -3.86768 3.37847 3.44968 3.49464 4.55000 4.71075 5.27553 5.32907 5.39922 5.48296 5.73170 5.81574 6.01109 6.09288 6.17395 6.28773 6.31455 6.35433 6.42812 6.48544 6.52371 6.61866 6.76796 6.90677 6.98159 7.10683 7.15813 7.24527 7.68784 7.70134 7.91797 8.01599 8.16345 8.28906 8.63864 9.15740 9.74266 11.20969 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.012976 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.198998 B = 2157.319143 C = 2637.555408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.144 4.144 4 C 0.060 3.940 5 H 0.038 0.962 6 C -0.484 4.484 7 H 0.060 0.940 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.275 1.275 14 C 0.101 3.899 15 H 0.032 0.968 16 C -0.144 4.144 17 C -0.122 4.122 18 C -0.152 4.152 19 C 0.053 3.947 20 O -0.347 6.347 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.010 0.990 24 H 0.089 0.911 25 H 0.032 0.968 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.257 0.743 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 6.048 -7.144 9.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.108 4.108 3 C -0.202 4.202 4 C 0.042 3.958 5 H 0.056 0.944 6 C -0.522 4.522 7 H 0.078 0.922 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.713 3.287 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.200 1.200 14 C 0.044 3.956 15 H 0.050 0.950 16 C -0.181 4.181 17 C -0.160 4.160 18 C -0.190 4.190 19 C -0.024 4.024 20 O -0.266 6.266 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.029 0.971 24 H 0.107 0.893 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.966 5.871 -6.844 9.493 hybrid contribution -0.100 -0.826 -0.222 0.861 sum -3.066 5.046 -7.066 9.208 Atomic orbital electron populations 1.21755 0.96626 1.02459 0.97046 1.21104 0.94909 0.92124 1.02629 1.21972 0.99837 0.99252 0.99101 1.18849 0.95584 0.93907 0.87495 0.94383 1.21037 1.25660 0.94116 1.11415 0.92169 1.24941 0.95428 0.98128 0.95786 1.69908 1.34253 1.34666 1.14691 0.86713 0.79192 0.85857 0.76945 1.21053 1.21562 1.19996 1.22365 0.80034 0.96656 0.96570 0.95011 1.22161 0.99738 1.02010 0.94224 1.21620 0.95358 1.00142 0.98830 1.22146 0.96552 1.02009 0.98304 1.22426 0.97767 0.95116 0.87133 1.88266 1.20997 1.74646 1.42667 0.93445 0.91720 0.97087 0.89308 0.94872 0.94082 0.94404 0.93327 0.92124 0.90124 0.92638 0.92912 0.91330 0.92396 0.90239 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 7.83 37.16 0.29 -2.45 16 2 C -0.09 -2.09 2.59 -90.62 -0.23 -2.32 16 3 C -0.14 -2.89 8.64 37.16 0.32 -2.57 16 4 C 0.06 1.46 1.49 -91.77 -0.14 1.32 16 5 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.48 -12.94 5.86 -34.44 -0.20 -13.15 16 7 H 0.06 1.65 7.03 -52.49 -0.37 1.28 16 8 C 0.06 1.57 5.34 -17.82 -0.10 1.48 16 9 N -0.90 -25.58 11.68 55.43 0.65 -24.93 16 10 Si 0.88 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.10 2.09 2.01 -26.68 -0.05 2.04 16 15 H 0.03 0.64 6.27 -51.93 -0.33 0.31 16 16 C -0.14 -2.71 5.28 -26.59 -0.14 -2.85 16 17 C -0.12 -1.87 6.03 -26.55 -0.16 -2.03 16 18 C -0.15 -2.25 6.14 -26.59 -0.16 -2.41 16 19 C 0.05 0.86 6.84 37.20 0.25 1.12 16 20 O -0.35 -7.13 6.29 -35.23 -0.22 -7.36 16 21 H 0.05 1.00 6.07 -51.92 -0.32 0.69 16 22 H 0.06 1.60 6.83 -51.93 -0.35 1.25 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 24 H 0.09 2.38 6.47 -51.93 -0.34 2.04 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.71 6.59 -51.93 -0.34 0.36 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.08 1.68 7.09 -51.93 -0.37 1.32 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 271.09 15.07 4.09 4.09 Total: -1.00 -27.81 271.09 -7.03 -34.84 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.20 Total: -1.40 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -0.32 Total: -21.83 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.65 Total: -24.93 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.22 Total: -7.36 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.81 -7.03 -34.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260694456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.960 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds