Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46846 * 2 1 4 4 C 1.52999 * 109.46896 * 240.00074 * 2 1 3 5 5 H 1.09007 * 109.46864 * 180.18881 * 4 2 1 6 6 C 1.50697 * 109.47203 * 300.18833 * 4 2 1 7 7 H 1.08000 * 120.00096 * 114.45584 * 6 4 2 8 8 C 1.37872 * 120.00094 * 294.45202 * 6 4 2 9 9 N 1.31519 * 120.00071 * 1.45202 * 8 6 4 10 10 Si 1.86801 * 120.00009 * 181.44775 * 8 6 4 11 11 H 1.48503 * 109.46948 * 90.00231 * 10 8 6 12 12 H 1.48506 * 109.47114 * 209.99825 * 10 8 6 13 13 H 1.48495 * 109.47039 * 330.00107 * 10 8 6 14 14 C 1.52998 * 109.47099 * 60.19359 * 4 2 1 15 15 H 1.09000 * 109.48518 * 53.91071 * 14 4 2 16 16 C 1.53099 * 109.48017 * 173.93301 * 14 4 2 17 17 C 1.53178 * 109.16403 * 177.57835 * 16 14 4 18 18 C 1.53175 * 109.04535 * 303.03571 * 17 16 14 19 19 C 1.53089 * 109.16286 * 56.97272 * 18 17 16 20 20 O 1.42903 * 109.41732 * 302.38863 * 19 18 17 21 21 H 1.09007 * 109.47254 * 48.58546 * 1 2 3 22 22 H 1.09001 * 109.46966 * 168.58083 * 1 2 3 23 23 H 1.08999 * 109.47318 * 288.58458 * 1 2 3 24 24 H 1.08997 * 109.47142 * 120.00173 * 2 1 3 25 25 H 1.08998 * 109.47125 * 66.63001 * 3 2 1 26 26 H 1.09005 * 109.47074 * 186.63239 * 3 2 1 27 27 H 1.08996 * 109.47356 * 306.62940 * 3 2 1 28 28 H 0.97003 * 119.99937 * 179.97438 * 9 8 6 29 29 H 1.09009 * 109.51865 * 297.49135 * 16 14 4 30 30 H 1.08996 * 109.52581 * 57.67626 * 16 14 4 31 31 H 1.08997 * 109.54515 * 183.15835 * 17 16 14 32 32 H 1.09004 * 109.53303 * 62.89873 * 17 16 14 33 33 H 1.09003 * 109.51669 * 297.06573 * 18 17 16 34 34 H 1.08994 * 109.52439 * 176.88036 * 18 17 16 35 35 H 1.09009 * 109.47663 * 182.41115 * 19 18 17 36 36 H 1.08997 * 109.48083 * 62.37986 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 3.1300 -0.7242 -1.2476 6 6 1.5338 -2.1407 -1.2516 7 1 0.8415 -2.4658 -2.0141 8 6 1.9546 -3.0242 -0.2805 9 7 2.7755 -2.6207 0.6646 10 14 1.3589 -4.7945 -0.3070 11 1 2.2949 -5.6198 -1.1120 12 1 1.3047 -5.3194 1.0812 13 1 0.0035 -4.8516 -0.9110 14 6 1.5339 0.0028 -2.4984 15 1 1.8083 1.0564 -2.4442 16 6 2.1651 -0.6256 -3.7437 17 6 1.6077 0.0643 -4.9926 18 6 0.0807 -0.0562 -4.9908 19 6 -0.4697 0.5503 -3.6974 20 8 0.1119 -0.1161 -2.5750 21 1 -0.3634 0.6798 -0.7707 22 1 -0.3633 -1.0073 -0.2035 23 1 -0.3634 0.3275 0.9741 24 1 1.8934 -0.5138 0.8899 25 1 1.7767 1.9209 0.9433 26 1 3.1235 1.4449 -0.1187 27 1 1.5830 1.9895 -0.8247 28 1 3.0712 -3.2423 1.3480 29 1 3.2469 -0.4965 -3.7083 30 1 1.9250 -1.6883 -3.7770 31 1 2.0103 -0.4155 -5.8846 32 1 1.8903 1.1171 -4.9842 33 1 -0.2016 -1.1074 -5.0492 34 1 -0.3280 0.4798 -5.8472 35 1 -1.5527 0.4289 -3.6711 36 1 -0.2217 1.6110 -3.6590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260694456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = -88.640771 kcal Electronic energy + Delta-G solvation = -15560.328443 eV Core-core repulsion = 13235.879014 eV Total energy + Delta-G solvation = -2324.449429 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41713 -37.17250 -34.36791 -33.87304 -32.07844 -28.77535 -27.73244 -25.86060 -24.67790 -23.16585 -20.98964 -20.16344 -18.27404 -16.98208 -16.54342 -16.08651 -15.60373 -15.27626 -14.87996 -14.66198 -14.35223 -13.92807 -13.52868 -13.28233 -12.87180 -12.79347 -12.63597 -12.55028 -12.15173 -11.97134 -11.83424 -11.74205 -11.45296 -11.32471 -11.16119 -10.68952 -10.42744 -10.27451 -9.79709 -7.98509 -6.02938 1.40546 1.42821 1.51956 2.49979 3.21639 3.37217 4.05623 4.07963 4.16412 4.33090 4.45671 4.58938 4.64052 4.68501 4.71421 4.82889 4.95840 4.99081 5.03439 5.09921 5.20303 5.23996 5.29060 5.30075 5.42211 5.45808 5.60631 5.70110 5.83027 5.94726 6.06828 6.23565 6.49770 6.83430 7.05668 7.60060 9.08060 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.012976 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.198998 B = 2157.319143 C = 2637.555408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.135 4.135 4 C 0.056 3.944 5 H 0.006 0.994 6 C -0.482 4.482 7 H 0.048 0.952 8 C 0.009 3.991 9 N -0.922 5.922 10 Si 0.938 3.062 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.109 3.891 15 H 0.045 0.955 16 C -0.144 4.144 17 C -0.116 4.116 18 C -0.149 4.149 19 C 0.044 3.956 20 O -0.375 6.375 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.255 0.745 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 7.319 -8.625 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.110 4.110 3 C -0.192 4.192 4 C 0.038 3.962 5 H 0.024 0.976 6 C -0.520 4.520 7 H 0.066 0.934 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.765 3.235 11 H -0.205 1.205 12 H -0.215 1.215 13 H -0.198 1.198 14 C 0.052 3.948 15 H 0.063 0.937 16 C -0.182 4.182 17 C -0.153 4.153 18 C -0.186 4.186 19 C -0.033 4.033 20 O -0.294 6.294 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.916 7.143 -8.341 11.659 hybrid contribution 0.168 -1.201 0.214 1.231 sum -3.748 5.943 -8.127 10.743 Atomic orbital electron populations 1.21594 0.95733 1.01014 0.98190 1.20999 0.95603 0.93970 1.00401 1.21839 0.99751 0.96895 1.00703 1.18764 0.93711 0.93534 0.90192 0.97569 1.21207 1.24700 0.95620 1.10481 0.93364 1.25586 0.95946 1.01483 0.95817 1.70037 1.35510 1.35528 1.15298 0.85862 0.78734 0.82085 0.76802 1.20524 1.21506 1.19825 1.22078 0.80709 0.96682 0.95340 0.93718 1.22099 0.99770 1.00592 0.95691 1.21592 0.95722 1.00771 0.97240 1.22126 0.96052 1.01575 0.98868 1.22724 0.98485 0.95764 0.86302 1.88189 1.20483 1.75693 1.45031 0.91834 0.94726 0.95920 0.93213 0.93316 0.94229 0.92605 0.93614 0.92333 0.92999 0.90974 0.91188 0.92753 0.88974 0.88681 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 7.83 71.98 0.56 -4.24 16 2 C -0.09 -4.28 2.59 -10.79 -0.03 -4.31 16 3 C -0.13 -5.20 8.64 71.98 0.62 -4.58 16 4 C 0.06 2.79 1.49 -11.54 -0.02 2.77 16 5 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 6 C -0.48 -26.40 5.86 25.60 0.15 -26.25 16 7 H 0.05 2.71 7.03 -2.91 -0.02 2.69 16 8 C 0.01 0.48 5.34 84.65 0.45 0.94 16 9 N -0.92 -54.33 11.68 21.45 0.25 -54.08 16 10 Si 0.94 45.22 29.54 68.60 2.03 47.25 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 14 C 0.11 4.42 2.01 30.63 0.06 4.48 16 15 H 0.05 1.69 6.27 -2.39 -0.01 1.68 16 16 C -0.14 -5.32 5.28 30.69 0.16 -5.15 16 17 C -0.12 -3.21 6.03 30.71 0.19 -3.02 16 18 C -0.15 -3.90 6.14 30.68 0.19 -3.71 16 19 C 0.04 1.28 6.84 72.01 0.49 1.78 16 20 O -0.37 -14.85 6.29 -148.98 -0.94 -15.79 16 21 H 0.06 2.59 6.07 -2.38 -0.01 2.57 16 22 H 0.03 1.71 6.83 -2.39 -0.02 1.69 16 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 2.74 6.47 -2.39 -0.02 2.72 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.94 6.59 -2.39 -0.02 1.92 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 2.19 7.09 -2.39 -0.02 2.17 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.69 271.09 5.19 -55.49 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.02 Total: 8.42 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.83 Total: -41.30 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.25 Total: -54.08 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.94 Total: -15.79 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -60.69 5.19 -55.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260694456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.147 kcal (2) G-P(sol) polarization free energy of solvation -60.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds