Wall clock time and date at job start Mon Mar 30 2020 02:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46863 * 2 1 4 4 C 1.52996 * 109.47320 * 120.00005 * 2 1 3 5 5 H 1.08997 * 109.46995 * 55.67332 * 4 2 1 6 6 C 1.50699 * 109.47400 * 175.67456 * 4 2 1 7 7 H 1.07998 * 120.00090 * 114.25750 * 6 4 2 8 8 C 1.37876 * 119.99920 * 294.25991 * 6 4 2 9 9 N 1.31511 * 120.00227 * 1.45234 * 8 6 4 10 10 Si 1.86797 * 119.99718 * 181.45490 * 8 6 4 11 11 H 1.48494 * 109.47498 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47117 * 120.00061 * 10 8 6 13 13 H 1.48507 * 109.46905 * 239.99582 * 10 8 6 14 14 C 1.52999 * 109.47094 * 295.67777 * 4 2 1 15 15 H 1.08999 * 109.49038 * 300.74056 * 14 4 2 16 16 C 1.53091 * 109.48142 * 180.71785 * 14 4 2 17 17 C 1.53178 * 109.21900 * 182.43917 * 16 14 4 18 18 C 1.53183 * 109.03405 * 56.94684 * 17 16 14 19 19 C 1.53097 * 109.16128 * 303.02195 * 18 17 16 20 20 O 1.42900 * 109.41729 * 57.61066 * 19 18 17 21 21 H 1.08999 * 109.47380 * 311.38582 * 1 2 3 22 22 H 1.09006 * 109.47400 * 71.39164 * 1 2 3 23 23 H 1.09001 * 109.46963 * 191.38521 * 1 2 3 24 24 H 1.09000 * 109.47399 * 240.00602 * 2 1 3 25 25 H 1.08997 * 109.47106 * 183.26975 * 3 2 1 26 26 H 1.08998 * 109.47493 * 303.27002 * 3 2 1 27 27 H 1.09003 * 109.47002 * 63.27371 * 3 2 1 28 28 H 0.97005 * 120.00219 * 180.02562 * 9 8 6 29 29 H 1.08994 * 109.52698 * 62.49982 * 16 14 4 30 30 H 1.09008 * 109.52053 * 302.37611 * 16 14 4 31 31 H 1.08993 * 109.54667 * 176.81048 * 17 16 14 32 32 H 1.09002 * 109.54368 * 296.99611 * 17 16 14 33 33 H 1.08998 * 109.52423 * 62.92614 * 18 17 16 34 34 H 1.09002 * 109.52184 * 183.11647 * 18 17 16 35 35 H 1.09001 * 109.47562 * 177.59674 * 19 18 17 36 36 H 1.08997 * 109.47988 * 297.61594 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6148 -1.7240 1.2888 6 6 3.5432 -0.8147 1.1968 7 1 4.1428 -0.2848 1.9221 8 6 4.1530 -1.5767 0.2229 9 7 3.4240 -2.1989 -0.6777 10 14 6.0146 -1.7253 0.1826 11 1 6.5985 -0.9352 1.2961 12 1 6.4006 -3.1516 0.3315 13 1 6.5246 -1.2071 -1.1122 14 6 1.6207 0.0601 2.4961 15 1 2.0349 1.0673 2.4505 16 6 2.1463 -0.6518 3.7453 17 6 1.6719 0.1013 4.9920 18 6 0.1426 0.1872 4.9719 19 6 -0.3055 0.8682 3.6760 20 8 0.1949 0.1346 2.5563 21 1 -0.3634 0.6794 0.7710 22 1 -0.3634 0.3279 -0.9740 23 1 -0.3633 -1.0075 0.2029 24 1 1.8934 -0.5137 -0.8900 25 1 3.1283 1.4431 -0.0586 26 1 1.6295 1.9730 -0.8592 27 1 1.7252 1.9391 0.9179 28 1 3.8530 -2.7353 -1.3627 29 1 3.2359 -0.6697 3.7233 30 1 1.7657 -1.6730 3.7699 31 1 1.9953 -0.4324 5.8856 32 1 2.0948 1.1059 4.9941 33 1 -0.2794 -0.8166 5.0206 34 1 -0.2007 0.7696 5.8270 35 1 -1.3945 0.8938 3.6366 36 1 0.0833 1.8860 3.6470 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260694457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:22 Heat of formation + Delta-G solvation = -89.809595 kcal Electronic energy + Delta-G solvation = -15457.870190 eV Core-core repulsion = 13133.370077 eV Total energy + Delta-G solvation = -2324.500113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45906 -37.24267 -34.54227 -33.84407 -32.12564 -28.89144 -27.66931 -25.84595 -24.82717 -23.12168 -21.01403 -20.22621 -18.25593 -17.10672 -16.66396 -16.32836 -15.57899 -15.16455 -14.89500 -14.69400 -14.33002 -13.99761 -13.57720 -13.31123 -13.00520 -12.84507 -12.66830 -12.45461 -12.18225 -11.90972 -11.87131 -11.71110 -11.51051 -11.32498 -11.25271 -10.80978 -10.44673 -10.26793 -9.88071 -8.05043 -6.14681 1.40720 1.43305 1.53288 2.44142 3.21370 3.25086 4.04713 4.05091 4.13957 4.30347 4.42668 4.62453 4.63492 4.68046 4.71094 4.82838 4.96811 4.99600 5.03409 5.09852 5.17292 5.24121 5.26862 5.29735 5.42539 5.47359 5.52296 5.67664 5.75541 5.89045 6.01032 6.24501 6.39504 6.69302 6.96799 7.51041 9.02396 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032349 B = 0.011549 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.354690 B = 2423.784881 C = 2970.126769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.118 4.118 4 C 0.066 3.934 5 H -0.012 1.012 6 C -0.509 4.509 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.918 5.918 10 Si 0.947 3.053 11 H -0.264 1.264 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.107 3.893 15 H 0.047 0.953 16 C -0.138 4.138 17 C -0.119 4.119 18 C -0.148 4.148 19 C 0.046 3.954 20 O -0.389 6.389 21 H 0.076 0.924 22 H 0.034 0.966 23 H 0.022 0.978 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.257 0.743 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 6.683 8.565 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.108 4.108 3 C -0.175 4.175 4 C 0.047 3.953 5 H 0.006 0.994 6 C -0.547 4.547 7 H 0.075 0.925 8 C -0.185 4.185 9 N -0.558 5.558 10 Si 0.773 3.227 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.051 3.949 15 H 0.065 0.935 16 C -0.176 4.176 17 C -0.156 4.156 18 C -0.186 4.186 19 C -0.031 4.031 20 O -0.309 6.309 21 H 0.095 0.905 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.808 6.486 8.285 11.569 hybrid contribution 1.238 -0.549 -0.257 1.379 sum -3.570 5.937 8.028 10.604 Atomic orbital electron populations 1.21849 0.96197 1.00414 0.99819 1.20971 0.93921 0.95589 1.00338 1.21612 0.99983 0.96088 0.99858 1.18629 0.94030 0.92602 0.90030 0.99388 1.21311 0.91882 1.28477 1.13016 0.92502 1.25649 1.01783 0.95610 0.95472 1.70087 1.36301 1.32723 1.16712 0.85673 0.81404 0.77615 0.77991 1.18774 1.21122 1.20991 1.22130 0.79693 0.97671 0.95454 0.93473 1.22045 1.01048 0.99059 0.95485 1.21621 0.96197 1.00526 0.97256 1.22141 0.95797 1.01759 0.98876 1.22744 0.99811 0.94529 0.86008 1.88066 1.21705 1.75562 1.45590 0.90549 0.94711 0.95852 0.93270 0.94398 0.93832 0.93138 0.93338 0.91868 0.93870 0.90870 0.91560 0.92186 0.88802 0.87947 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.12 71.98 0.58 -4.76 16 2 C -0.09 -4.30 2.58 -10.80 -0.03 -4.32 16 3 C -0.12 -4.99 8.55 71.98 0.62 -4.37 16 4 C 0.07 3.32 1.40 -11.54 -0.02 3.31 16 5 H -0.01 -0.72 8.11 -2.39 -0.02 -0.73 16 6 C -0.51 -27.31 6.68 25.60 0.17 -27.14 16 7 H 0.06 2.97 6.89 -2.91 -0.02 2.95 16 8 C 0.01 0.73 5.32 84.65 0.45 1.18 16 9 N -0.92 -53.99 11.68 21.45 0.25 -53.74 16 10 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 C 0.11 4.47 1.74 30.62 0.05 4.52 16 15 H 0.05 1.95 6.24 -2.39 -0.01 1.93 16 16 C -0.14 -5.28 5.10 30.68 0.16 -5.13 16 17 C -0.12 -3.35 6.03 30.72 0.19 -3.17 16 18 C -0.15 -3.71 6.14 30.69 0.19 -3.52 16 19 C 0.05 1.27 6.84 72.01 0.49 1.76 16 20 O -0.39 -14.81 6.83 -148.98 -1.02 -15.83 16 21 H 0.08 3.01 5.79 -2.39 -0.01 2.99 16 22 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.02 1.03 8.08 -2.39 -0.02 1.01 16 24 H 0.05 2.74 6.40 -2.39 -0.02 2.73 16 25 H 0.04 1.69 7.47 -2.39 -0.02 1.67 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.95 6.15 -2.39 -0.01 1.93 16 28 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 29 H 0.06 2.55 6.78 -2.39 -0.02 2.54 16 30 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -60.26 271.37 5.14 -55.13 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.02 Total: 10.39 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 2.85 Total: -41.64 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.25 Total: -53.74 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.02 Total: -15.83 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.26 5.14 -55.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260694457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.683 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds