Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46861 * 2 1 4 4 C 1.52996 * 109.47597 * 120.00167 * 2 1 3 5 5 H 1.09007 * 109.46842 * 305.07779 * 4 2 1 6 6 C 1.50704 * 109.47455 * 185.08018 * 4 2 1 7 7 H 1.07998 * 119.99683 * 294.97318 * 6 4 2 8 8 C 1.37873 * 120.00339 * 114.97627 * 6 4 2 9 9 N 1.31510 * 120.00281 * 184.80802 * 8 6 4 10 10 Si 1.86797 * 119.99796 * 4.80199 * 8 6 4 11 11 H 1.48499 * 109.47326 * 84.69102 * 10 8 6 12 12 H 1.48507 * 109.47077 * 204.68402 * 10 8 6 13 13 H 1.48505 * 109.47439 * 324.68811 * 10 8 6 14 14 C 1.52996 * 109.47203 * 65.07698 * 4 2 1 15 15 H 1.09002 * 109.49005 * 305.02872 * 14 4 2 16 16 C 1.53089 * 109.48416 * 185.00273 * 14 4 2 17 17 C 1.53171 * 109.16771 * 182.40973 * 16 14 4 18 18 C 1.53181 * 109.03890 * 56.97843 * 17 16 14 19 19 C 1.53099 * 109.15893 * 303.02346 * 18 17 16 20 20 O 1.42899 * 109.48203 * 65.05915 * 14 4 2 21 21 H 1.09007 * 109.47112 * 299.99177 * 1 2 3 22 22 H 1.08993 * 109.47194 * 59.99664 * 1 2 3 23 23 H 1.09002 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47432 * 240.00500 * 2 1 3 25 25 H 1.08999 * 109.47123 * 185.07333 * 3 2 1 26 26 H 1.09004 * 109.47466 * 305.07485 * 3 2 1 27 27 H 1.09005 * 109.47255 * 65.07329 * 3 2 1 28 28 H 0.97002 * 120.00102 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.52168 * 62.49860 * 16 14 4 30 30 H 1.09001 * 109.52385 * 302.31789 * 16 14 4 31 31 H 1.09001 * 109.54943 * 176.84978 * 17 16 14 32 32 H 1.09006 * 109.54398 * 297.02555 * 17 16 14 33 33 H 1.09002 * 109.51890 * 62.92638 * 18 17 16 34 34 H 1.08993 * 109.52569 * 183.05460 * 18 17 16 35 35 H 1.08994 * 109.47434 * 177.58891 * 19 18 17 36 36 H 1.08995 * 109.47912 * 297.60691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6044 -0.2626 2.1369 6 6 3.5418 -0.6132 1.3136 7 1 4.1502 -1.0859 0.5568 8 6 4.1392 0.0890 2.3388 9 7 5.4426 0.2638 2.3441 10 14 3.0969 0.7923 3.7203 11 1 2.8699 -0.2529 4.7505 12 1 3.8017 1.9468 4.3336 13 1 1.7908 1.2423 3.1753 14 6 1.6370 -2.1959 1.1870 15 1 0.5583 -2.2726 1.0506 16 6 2.0373 -2.8900 2.4914 17 6 1.6853 -4.3778 2.3978 18 6 2.3885 -4.9819 1.1784 19 6 1.9746 -4.2069 -0.0754 20 8 2.3021 -2.8258 0.0902 21 1 -0.3634 0.5137 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 3.1261 1.4439 -0.0909 26 1 1.6042 1.9820 -0.8411 27 1 1.7526 1.9295 0.9320 28 1 5.8628 0.7575 3.0656 29 1 1.4973 -2.4396 3.3243 30 1 3.1101 -2.7787 2.6490 31 1 2.0184 -4.8889 3.3011 32 1 0.6064 -4.4913 2.2916 33 1 3.4684 -4.9129 1.3094 34 1 2.1005 -6.0278 1.0729 35 1 2.5049 -4.6051 -0.9403 36 1 0.9004 -4.3102 -0.2284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260694459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -75.294263 kcal Electronic energy + Delta-G solvation = -15465.560439 eV Core-core repulsion = 13141.689758 eV Total energy + Delta-G solvation = -2323.870681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85089 -35.70533 -32.93092 -32.11428 -30.77039 -27.44684 -26.35465 -24.03608 -23.27110 -21.31775 -19.47844 -18.60735 -17.00731 -15.42449 -15.11472 -14.18282 -14.10482 -14.00154 -13.44106 -13.23693 -12.66242 -12.26409 -12.09936 -11.99875 -11.67683 -11.39964 -11.00091 -10.83068 -10.69206 -10.47686 -10.29044 -10.20562 -9.95737 -9.55404 -9.38792 -9.05028 -8.89516 -8.47644 -8.34516 -5.95797 -3.89597 3.30565 3.38916 3.40410 4.48658 4.64797 5.27790 5.31711 5.34994 5.42941 5.68715 5.78297 5.88074 5.93542 6.00603 6.04092 6.16154 6.21910 6.26469 6.41517 6.43944 6.52645 6.59590 6.62466 6.68189 6.73396 6.87568 7.09699 7.17853 7.33714 7.48288 7.52139 7.86548 8.17708 8.72222 9.19152 9.68282 11.18205 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.014281 C = 0.011431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.964722 B = 1960.114301 C = 2448.931114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.131 4.131 4 C 0.018 3.982 5 H 0.046 0.954 6 C -0.478 4.478 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.905 5.905 10 Si 0.861 3.139 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.263 1.263 14 C 0.105 3.895 15 H 0.030 0.970 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.153 4.153 19 C 0.059 3.941 20 O -0.355 6.355 21 H 0.042 0.958 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -5.851 -1.571 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.188 4.188 4 C -0.001 4.001 5 H 0.064 0.936 6 C -0.516 4.516 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.544 5.544 10 Si 0.689 3.311 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.189 1.189 14 C 0.047 3.953 15 H 0.047 0.953 16 C -0.184 4.184 17 C -0.158 4.158 18 C -0.191 4.191 19 C -0.018 4.018 20 O -0.274 6.274 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.715 -5.655 -1.579 10.508 hybrid contribution -0.691 0.168 1.152 1.354 sum -9.406 -5.486 -0.427 10.897 Atomic orbital electron populations 1.21986 0.98283 1.00271 1.00086 1.21154 0.92045 0.96442 1.00679 1.21693 1.02685 0.95690 0.98719 1.19458 0.98055 0.88414 0.94200 0.93604 1.20825 0.88781 1.31413 1.10610 0.90199 1.25043 0.94552 0.95829 0.97577 1.69897 1.09209 1.42332 1.32946 0.87148 0.81260 0.79240 0.83447 1.20372 1.21819 1.18868 1.22341 0.92551 0.95487 0.84908 0.95265 1.22167 1.04359 0.93503 0.98410 1.21595 0.99252 0.97287 0.97665 1.22147 1.01843 0.98659 0.96403 1.22412 0.98273 0.84342 0.96816 1.88079 1.68878 1.20438 1.49989 0.93844 0.94117 0.93563 0.91628 0.91001 0.95385 0.94326 0.92973 0.92616 0.89172 0.92486 0.92999 0.90970 0.92271 0.90047 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.96 37.16 0.33 -2.29 16 2 C -0.08 -1.77 2.45 -90.62 -0.22 -1.99 16 3 C -0.13 -2.74 8.76 37.16 0.33 -2.42 16 4 C 0.02 0.40 1.19 -91.77 -0.11 0.30 16 5 H 0.05 1.08 4.51 -51.92 -0.23 0.85 16 6 C -0.48 -12.96 6.01 -34.44 -0.21 -13.17 16 7 H 0.08 2.46 7.86 -52.49 -0.41 2.04 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 10 Si 0.86 21.26 27.23 -169.99 -4.63 16.63 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.26 -6.21 6.19 56.52 0.35 -5.86 16 14 C 0.10 2.16 2.19 -26.69 -0.06 2.11 16 15 H 0.03 0.56 6.35 -51.93 -0.33 0.23 16 16 C -0.15 -2.90 5.27 -26.60 -0.14 -3.04 16 17 C -0.12 -1.92 6.03 -26.55 -0.16 -2.08 16 18 C -0.15 -2.34 6.14 -26.59 -0.16 -2.51 16 19 C 0.06 0.97 6.84 37.21 0.25 1.22 16 20 O -0.36 -7.48 9.21 -35.23 -0.32 -7.80 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.77 6.46 -51.93 -0.34 0.43 16 24 H 0.07 1.44 7.70 -51.93 -0.40 1.04 16 25 H 0.07 1.68 7.28 -51.93 -0.38 1.30 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.81 7.93 -51.93 -0.41 0.40 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.09 2.06 7.31 -51.93 -0.38 1.68 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 275.21 15.07 4.15 4.15 Total: -1.00 -29.05 275.21 -6.57 -35.62 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.30 Total: 0.02 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -0.24 Total: -22.01 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.77 Total: -26.60 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.32 Total: -7.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.63 Total: 16.63 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.05 -6.57 -35.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260694459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.677 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds