Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46861 * 2 1 4 4 C 1.52996 * 109.47597 * 120.00167 * 2 1 3 5 5 H 1.09007 * 109.46842 * 305.07779 * 4 2 1 6 6 C 1.50704 * 109.47455 * 185.08018 * 4 2 1 7 7 H 1.07998 * 119.99683 * 294.97318 * 6 4 2 8 8 C 1.37873 * 120.00339 * 114.97627 * 6 4 2 9 9 N 1.31510 * 120.00281 * 184.80802 * 8 6 4 10 10 Si 1.86797 * 119.99796 * 4.80199 * 8 6 4 11 11 H 1.48499 * 109.47326 * 84.69102 * 10 8 6 12 12 H 1.48507 * 109.47077 * 204.68402 * 10 8 6 13 13 H 1.48505 * 109.47439 * 324.68811 * 10 8 6 14 14 C 1.52996 * 109.47203 * 65.07698 * 4 2 1 15 15 H 1.09002 * 109.49005 * 305.02872 * 14 4 2 16 16 C 1.53089 * 109.48416 * 185.00273 * 14 4 2 17 17 C 1.53171 * 109.16771 * 182.40973 * 16 14 4 18 18 C 1.53181 * 109.03890 * 56.97843 * 17 16 14 19 19 C 1.53099 * 109.15893 * 303.02346 * 18 17 16 20 20 O 1.42899 * 109.48203 * 65.05915 * 14 4 2 21 21 H 1.09007 * 109.47112 * 299.99177 * 1 2 3 22 22 H 1.08993 * 109.47194 * 59.99664 * 1 2 3 23 23 H 1.09002 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47432 * 240.00500 * 2 1 3 25 25 H 1.08999 * 109.47123 * 185.07333 * 3 2 1 26 26 H 1.09004 * 109.47466 * 305.07485 * 3 2 1 27 27 H 1.09005 * 109.47255 * 65.07329 * 3 2 1 28 28 H 0.97002 * 120.00102 * 180.02562 * 9 8 6 29 29 H 1.09001 * 109.52168 * 62.49860 * 16 14 4 30 30 H 1.09001 * 109.52385 * 302.31789 * 16 14 4 31 31 H 1.09001 * 109.54943 * 176.84978 * 17 16 14 32 32 H 1.09006 * 109.54398 * 297.02555 * 17 16 14 33 33 H 1.09002 * 109.51890 * 62.92638 * 18 17 16 34 34 H 1.08993 * 109.52569 * 183.05460 * 18 17 16 35 35 H 1.08994 * 109.47434 * 177.58891 * 19 18 17 36 36 H 1.08995 * 109.47912 * 297.60691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 1 1.6044 -0.2626 2.1369 6 6 3.5418 -0.6132 1.3136 7 1 4.1502 -1.0859 0.5568 8 6 4.1392 0.0890 2.3388 9 7 5.4426 0.2638 2.3441 10 14 3.0969 0.7923 3.7203 11 1 2.8699 -0.2529 4.7505 12 1 3.8017 1.9468 4.3336 13 1 1.7908 1.2423 3.1753 14 6 1.6370 -2.1959 1.1870 15 1 0.5583 -2.2726 1.0506 16 6 2.0373 -2.8900 2.4914 17 6 1.6853 -4.3778 2.3978 18 6 2.3885 -4.9819 1.1784 19 6 1.9746 -4.2069 -0.0754 20 8 2.3021 -2.8258 0.0902 21 1 -0.3634 0.5137 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 3.1261 1.4439 -0.0909 26 1 1.6042 1.9820 -0.8411 27 1 1.7526 1.9295 0.9320 28 1 5.8628 0.7575 3.0656 29 1 1.4973 -2.4396 3.3243 30 1 3.1101 -2.7787 2.6490 31 1 2.0184 -4.8889 3.3011 32 1 0.6064 -4.4913 2.2916 33 1 3.4684 -4.9129 1.3094 34 1 2.1005 -6.0278 1.0729 35 1 2.5049 -4.6051 -0.9403 36 1 0.9004 -4.3102 -0.2284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260694459.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -92.846519 kcal Electronic energy + Delta-G solvation = -15466.321562 eV Core-core repulsion = 13141.689758 eV Total energy + Delta-G solvation = -2324.631804 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37755 -37.36262 -34.41560 -34.14187 -32.32313 -29.20348 -27.92218 -25.70865 -24.82998 -22.88115 -20.91318 -20.35311 -19.07507 -16.88928 -16.77720 -16.00641 -15.61965 -15.45675 -14.98400 -14.81605 -14.58801 -13.85010 -13.71798 -13.39636 -13.36831 -13.05663 -12.67918 -12.46693 -12.12397 -11.98409 -11.94425 -11.78016 -11.62766 -11.38131 -11.05361 -10.86090 -10.73648 -10.38358 -10.00189 -8.15633 -6.11855 1.33769 1.34756 1.43420 2.40412 3.15385 3.26504 3.95111 4.02803 4.12513 4.24963 4.34343 4.37245 4.50707 4.53730 4.62494 4.76805 4.88678 4.90658 4.95214 4.97982 5.05017 5.07634 5.16028 5.20336 5.26391 5.29700 5.46105 5.55504 5.61300 5.75260 5.77643 5.90671 6.46085 6.75411 6.96055 7.48578 9.02817 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.025636 B = 0.014281 C = 0.011431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.964722 B = 1960.114301 C = 2448.931114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.127 4.127 4 C 0.012 3.988 5 H 0.046 0.954 6 C -0.460 4.460 7 H 0.026 0.974 8 C 0.013 3.987 9 N -0.959 5.959 10 Si 0.917 3.083 11 H -0.268 1.268 12 H -0.296 1.296 13 H -0.238 1.238 14 C 0.106 3.894 15 H 0.058 0.942 16 C -0.149 4.149 17 C -0.116 4.116 18 C -0.151 4.151 19 C 0.050 3.950 20 O -0.392 6.392 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.446 -6.666 -1.336 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.185 4.185 4 C -0.006 4.006 5 H 0.064 0.936 6 C -0.498 4.498 7 H 0.044 0.956 8 C -0.182 4.182 9 N -0.602 5.602 10 Si 0.743 3.257 11 H -0.193 1.193 12 H -0.223 1.223 13 H -0.162 1.162 14 C 0.049 3.951 15 H 0.075 0.925 16 C -0.187 4.187 17 C -0.153 4.153 18 C -0.188 4.188 19 C -0.026 4.026 20 O -0.311 6.311 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.185 -6.487 -1.357 13.871 hybrid contribution 0.440 0.353 0.956 1.110 sum -11.745 -6.134 -0.402 13.257 Atomic orbital electron populations 1.21877 0.94677 1.01583 1.01590 1.21086 0.95053 0.95603 0.98699 1.21638 1.00367 0.96468 0.99988 1.19493 0.94771 0.91094 0.95284 0.93594 1.20853 0.91020 1.29444 1.08507 0.95581 1.25773 0.95466 0.96696 1.00268 1.70066 1.11432 1.44465 1.34187 0.86209 0.80515 0.78516 0.80454 1.19282 1.22310 1.16231 1.22214 0.93805 0.93719 0.85360 0.92468 1.22135 1.01496 0.96765 0.98317 1.21586 1.00922 0.94280 0.98501 1.22140 1.00283 1.00653 0.95752 1.22707 1.00069 0.82052 0.97812 1.88030 1.69781 1.23199 1.50097 0.93087 0.91896 0.92366 0.93262 0.94820 0.92260 0.94431 0.93235 0.91999 0.93674 0.91235 0.90310 0.93529 0.88578 0.88900 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.96 71.98 0.64 -3.73 16 2 C -0.09 -3.47 2.45 -10.80 -0.03 -3.50 16 3 C -0.13 -5.24 8.76 71.98 0.63 -4.61 16 4 C 0.01 0.56 1.19 -11.54 -0.01 0.55 16 5 H 0.05 2.08 4.51 -2.38 -0.01 2.07 16 6 C -0.46 -25.97 6.01 25.60 0.15 -25.81 16 7 H 0.03 1.71 7.86 -2.91 -0.02 1.69 16 8 C 0.01 0.74 5.47 84.65 0.46 1.20 16 9 N -0.96 -61.07 13.96 21.45 0.30 -60.77 16 10 Si 0.92 44.10 27.23 68.60 1.87 45.97 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.24 -10.42 6.19 99.48 0.62 -9.80 16 14 C 0.11 4.24 2.19 30.62 0.07 4.30 16 15 H 0.06 1.97 6.35 -2.39 -0.02 1.96 16 16 C -0.15 -5.74 5.27 30.68 0.16 -5.58 16 17 C -0.12 -3.35 6.03 30.71 0.19 -3.17 16 18 C -0.15 -4.27 6.14 30.69 0.19 -4.09 16 19 C 0.05 1.53 6.84 72.02 0.49 2.02 16 20 O -0.39 -16.32 9.21 -148.98 -1.37 -17.69 16 21 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.68 6.46 -2.39 -0.02 1.66 16 24 H 0.05 2.15 7.70 -2.39 -0.02 2.13 16 25 H 0.03 1.60 7.28 -2.39 -0.02 1.58 16 26 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.04 1.52 7.93 -2.38 -0.02 1.50 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.04 2.11 7.31 -2.39 -0.02 2.10 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -66.42 275.21 4.67 -61.75 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.93 Total: 13.14 kcal Atomic # 6 Polarization: -45.35 SS G_CDS: 2.95 Total: -42.40 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.30 Total: -60.77 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.37 Total: -17.69 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.87 Total: 45.97 kcal Total: -66.42 4.67 -61.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260694459.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.094 kcal (2) G-P(sol) polarization free energy of solvation -66.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds