Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 108.76950 * 2 1 4 4 C 1.54067 * 108.87747 * 241.48840 * 2 1 3 5 5 C 1.54071 * 112.81852 * 197.50890 * 4 2 1 6 6 C 1.50476 * 112.49161 * 318.28182 * 5 4 2 7 7 C 1.54241 * 108.52338 * 94.15306 * 6 5 4 8 8 C 1.45541 * 112.40466 * 280.00804 * 7 6 5 9 9 H 1.09004 * 108.89387 * 301.18346 * 8 7 6 10 10 C 1.52998 * 108.89594 * 182.69618 * 8 7 6 11 11 C 1.50476 * 108.87928 * 118.50716 * 2 1 3 12 12 O 1.42900 * 109.78841 * 95.12240 * 11 2 1 13 13 C 1.50705 * 109.62612 * 334.64180 * 11 2 1 14 14 H 1.07997 * 120.00170 * 325.65119 * 13 11 2 15 15 C 1.37884 * 119.99768 * 145.65698 * 13 11 2 16 16 N 1.31515 * 120.00159 * 8.22781 * 15 13 11 17 17 Si 1.86800 * 119.99542 * 188.23014 * 15 13 11 18 18 H 1.48505 * 109.46676 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47375 * 299.99741 * 17 15 13 20 20 H 1.48498 * 109.47024 * 60.00160 * 17 15 13 21 21 H 1.09005 * 109.47063 * 308.56451 * 1 2 3 22 22 H 1.08998 * 109.47362 * 68.56150 * 1 2 3 23 23 H 1.08999 * 109.47338 * 188.56723 * 1 2 3 24 24 H 1.08999 * 108.81222 * 76.64211 * 4 2 1 25 25 H 1.09002 * 108.72037 * 318.30290 * 4 2 1 26 26 H 1.08993 * 108.87990 * 197.50589 * 5 4 2 27 27 H 1.08997 * 108.87645 * 79.05384 * 5 4 2 28 28 H 1.09000 * 109.63289 * 334.43840 * 6 5 4 29 29 H 1.09004 * 109.78570 * 213.95452 * 6 5 4 30 30 H 1.09001 * 108.89143 * 159.25706 * 7 6 5 31 31 H 1.08994 * 108.89456 * 40.76791 * 7 6 5 32 32 H 1.09000 * 109.46682 * 291.23910 * 10 8 7 33 33 H 1.09000 * 109.47532 * 51.23417 * 10 8 7 34 34 H 1.09001 * 109.47501 * 171.24414 * 10 8 7 35 35 H 0.96701 * 114.00442 * 299.51826 * 12 11 2 36 36 H 0.96999 * 119.99872 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0321 0.0000 4 6 2.0284 -0.6959 -1.2810 5 6 3.5033 -1.1320 -1.1888 6 6 4.3713 -0.0917 -0.5342 7 6 4.4787 -0.4187 0.9694 8 6 3.3099 0.0201 1.7173 9 1 3.1939 1.0966 1.5913 10 6 3.5293 -0.2815 3.2012 11 6 2.0169 -0.6795 1.2512 12 8 2.2870 -2.0563 0.9801 13 6 0.9669 -0.5720 2.3270 14 1 0.3475 0.3103 2.3907 15 6 0.7973 -1.6001 3.2299 16 7 1.6521 -2.5992 3.2571 17 14 -0.6467 -1.5738 4.4147 18 1 -0.6030 -2.7834 5.2751 19 1 -0.5673 -0.3590 5.2650 20 1 -1.9172 -1.5580 3.6461 21 1 -0.3633 0.6407 0.8036 22 1 -0.3634 0.3756 -0.9565 23 1 -0.3634 -1.0162 0.1531 24 1 1.9166 -0.0093 -2.1202 25 1 1.4123 -1.5763 -1.4632 26 1 3.8783 -1.3223 -2.1943 27 1 3.5627 -2.0548 -0.6118 28 1 3.9232 0.8934 -0.6636 29 1 5.3644 -0.1040 -0.9834 30 1 5.3627 0.0732 1.3752 31 1 4.5904 -1.4963 1.0891 32 1 3.5170 -1.3600 3.3583 33 1 4.4926 0.1204 3.5152 34 1 2.7345 0.1801 3.7872 35 1 1.5168 -2.5559 0.6761 36 1 1.5326 -3.3226 3.8921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = -57.372356 kcal Electronic energy + Delta-G solvation = -16107.028910 eV Core-core repulsion = 13783.935381 eV Total energy + Delta-G solvation = -2323.093529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99549 -34.13043 -33.31181 -31.88178 -31.12236 -27.01007 -25.84564 -24.53455 -22.47456 -21.00100 -18.68975 -18.10086 -16.89973 -14.94568 -14.68861 -14.15435 -13.90431 -13.42671 -13.11882 -12.47080 -12.00812 -11.77928 -11.66265 -11.40716 -11.09059 -10.92720 -10.80660 -10.52055 -10.33491 -10.17517 -10.04709 -9.75498 -9.69891 -9.32592 -9.19850 -9.11017 -8.56154 -8.22870 -7.77410 -5.79071 -3.94986 3.32252 3.38237 3.41608 4.46997 5.32955 5.58696 5.64038 5.67954 5.94865 6.05118 6.16393 6.24071 6.30743 6.46753 6.48364 6.54344 6.69060 6.80265 6.82433 6.87581 6.93199 7.06808 7.11078 7.25003 7.30526 7.31689 7.35629 7.52417 7.70799 7.91070 8.01737 8.13514 8.37387 8.93425 9.55471 9.78544 11.13170 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.014136 C = 0.012042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.743407 B = 1980.313957 C = 2324.545673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 H 0.047 0.953 4 C -0.094 4.094 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.101 4.101 8 C -0.063 4.063 9 H 0.036 0.964 10 C -0.127 4.127 11 C 0.268 3.732 12 O -0.527 6.527 13 C -0.549 4.549 14 H 0.056 0.944 15 C 0.080 3.920 16 N -0.842 5.842 17 Si 0.870 3.130 18 H -0.290 1.290 19 H -0.280 1.280 20 H -0.279 1.279 21 H 0.056 0.944 22 H 0.016 0.984 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.002 0.998 34 H 0.049 0.951 35 H 0.346 0.654 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 2.479 -5.529 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 H 0.065 0.935 4 C -0.132 4.132 5 C -0.155 4.155 6 C -0.148 4.148 7 C -0.139 4.139 8 C -0.082 4.082 9 H 0.054 0.946 10 C -0.184 4.184 11 C 0.227 3.773 12 O -0.329 6.329 13 C -0.587 4.587 14 H 0.074 0.926 15 C -0.125 4.125 16 N -0.477 5.477 17 Si 0.698 3.302 18 H -0.215 1.215 19 H -0.206 1.206 20 H -0.205 1.205 21 H 0.075 0.925 22 H 0.035 0.965 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.190 0.810 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.319 2.471 -5.239 6.239 hybrid contribution -1.490 0.069 0.593 1.605 sum 0.829 2.540 -4.646 5.360 Atomic orbital electron populations 1.21753 0.96067 1.01862 0.98049 1.21786 0.95561 0.99261 0.96668 0.93464 1.21735 0.95878 0.98940 0.96664 1.21414 0.94348 1.01166 0.98575 1.21264 0.97916 0.98926 0.96732 1.20458 0.97522 1.02233 0.93674 1.19962 0.95242 0.97038 0.95960 0.94567 1.21783 0.96358 1.04787 0.95466 1.18273 0.90483 0.80059 0.88476 1.86367 1.36049 1.21597 1.88853 1.21548 1.19098 1.03867 1.14209 0.92628 1.24899 0.95212 0.96138 0.96224 1.70187 1.33068 1.09757 1.34717 0.87045 0.84252 0.77256 0.81659 1.21531 1.20560 1.20497 0.92460 0.96460 0.92927 0.94801 0.93230 0.95048 0.89133 0.93068 0.93832 0.95162 0.91176 0.89376 0.97879 0.93157 0.80998 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 7.92 37.16 0.29 -2.07 16 2 C -0.11 -2.30 2.03 -91.33 -0.19 -2.49 16 3 H 0.05 0.97 6.63 -51.93 -0.34 0.62 16 4 C -0.09 -1.70 4.69 -25.61 -0.12 -1.82 16 5 C -0.12 -2.09 5.29 -27.43 -0.14 -2.24 16 6 C -0.11 -1.97 5.61 -27.34 -0.15 -2.12 16 7 C -0.10 -2.04 4.35 -29.60 -0.13 -2.17 16 8 C -0.06 -1.40 1.87 -93.49 -0.18 -1.58 16 9 H 0.04 0.80 7.47 -51.93 -0.39 0.41 16 10 C -0.13 -2.99 7.82 37.16 0.29 -2.70 16 11 C 0.27 6.09 0.45 -92.39 -0.04 6.05 16 12 O -0.53 -12.34 6.31 -35.23 -0.22 -12.56 16 13 C -0.55 -13.80 5.05 -34.44 -0.17 -13.98 16 14 H 0.06 1.43 6.22 -52.49 -0.33 1.11 16 15 C 0.08 2.06 4.53 -17.82 -0.08 1.98 16 16 N -0.84 -22.36 9.55 55.43 0.53 -21.83 16 17 Si 0.87 20.42 29.54 -169.99 -5.02 15.40 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H 0.06 1.18 6.33 -51.93 -0.33 0.85 16 22 H 0.02 0.29 8.11 -51.93 -0.42 -0.13 16 23 H 0.05 1.07 7.89 -51.93 -0.41 0.66 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 1.78 5.33 -51.93 -0.28 1.51 16 28 H 0.05 0.91 6.98 -51.93 -0.36 0.55 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 31 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 32 H 0.09 2.30 6.18 -51.93 -0.32 1.97 16 33 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 34 H 0.05 1.24 6.93 -51.93 -0.36 0.88 16 35 H 0.35 8.07 8.81 45.56 0.40 8.47 16 36 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 256.58 15.07 3.87 3.87 Total: -1.00 -25.42 256.58 -6.60 -32.02 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.13 Total: 6.24 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -0.62 Total: -23.13 kcal Atomic # 7 Polarization: -22.36 SS G_CDS: 0.53 Total: -21.83 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.22 Total: -12.56 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.42 -6.60 -32.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.353 kcal (2) G-P(sol) polarization free energy of solvation -25.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds