Wall clock time and date at job start Mon Mar 30 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 108.76950 * 2 1 4 4 C 1.54067 * 108.87747 * 241.48840 * 2 1 3 5 5 C 1.54071 * 112.81852 * 197.50890 * 4 2 1 6 6 C 1.50476 * 112.49161 * 318.28182 * 5 4 2 7 7 C 1.54241 * 108.52338 * 94.15306 * 6 5 4 8 8 C 1.45541 * 112.40466 * 280.00804 * 7 6 5 9 9 H 1.09004 * 108.89387 * 301.18346 * 8 7 6 10 10 C 1.52998 * 108.89594 * 182.69618 * 8 7 6 11 11 C 1.50476 * 108.87928 * 118.50716 * 2 1 3 12 12 O 1.42900 * 109.78841 * 95.12240 * 11 2 1 13 13 C 1.50705 * 109.62612 * 334.64180 * 11 2 1 14 14 H 1.07997 * 120.00170 * 325.65119 * 13 11 2 15 15 C 1.37884 * 119.99768 * 145.65698 * 13 11 2 16 16 N 1.31515 * 120.00159 * 8.22781 * 15 13 11 17 17 Si 1.86800 * 119.99542 * 188.23014 * 15 13 11 18 18 H 1.48505 * 109.46676 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47375 * 299.99741 * 17 15 13 20 20 H 1.48498 * 109.47024 * 60.00160 * 17 15 13 21 21 H 1.09005 * 109.47063 * 308.56451 * 1 2 3 22 22 H 1.08998 * 109.47362 * 68.56150 * 1 2 3 23 23 H 1.08999 * 109.47338 * 188.56723 * 1 2 3 24 24 H 1.08999 * 108.81222 * 76.64211 * 4 2 1 25 25 H 1.09002 * 108.72037 * 318.30290 * 4 2 1 26 26 H 1.08993 * 108.87990 * 197.50589 * 5 4 2 27 27 H 1.08997 * 108.87645 * 79.05384 * 5 4 2 28 28 H 1.09000 * 109.63289 * 334.43840 * 6 5 4 29 29 H 1.09004 * 109.78570 * 213.95452 * 6 5 4 30 30 H 1.09001 * 108.89143 * 159.25706 * 7 6 5 31 31 H 1.08994 * 108.89456 * 40.76791 * 7 6 5 32 32 H 1.09000 * 109.46682 * 291.23910 * 10 8 7 33 33 H 1.09000 * 109.47532 * 51.23417 * 10 8 7 34 34 H 1.09001 * 109.47501 * 171.24414 * 10 8 7 35 35 H 0.96701 * 114.00442 * 299.51826 * 12 11 2 36 36 H 0.96999 * 119.99872 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8807 1.0321 0.0000 4 6 2.0284 -0.6959 -1.2810 5 6 3.5033 -1.1320 -1.1888 6 6 4.3713 -0.0917 -0.5342 7 6 4.4787 -0.4187 0.9694 8 6 3.3099 0.0201 1.7173 9 1 3.1939 1.0966 1.5913 10 6 3.5293 -0.2815 3.2012 11 6 2.0169 -0.6795 1.2512 12 8 2.2870 -2.0563 0.9801 13 6 0.9669 -0.5720 2.3270 14 1 0.3475 0.3103 2.3907 15 6 0.7973 -1.6001 3.2299 16 7 1.6521 -2.5992 3.2571 17 14 -0.6467 -1.5738 4.4147 18 1 -0.6030 -2.7834 5.2751 19 1 -0.5673 -0.3590 5.2650 20 1 -1.9172 -1.5580 3.6461 21 1 -0.3633 0.6407 0.8036 22 1 -0.3634 0.3756 -0.9565 23 1 -0.3634 -1.0162 0.1531 24 1 1.9166 -0.0093 -2.1202 25 1 1.4123 -1.5763 -1.4632 26 1 3.8783 -1.3223 -2.1943 27 1 3.5627 -2.0548 -0.6118 28 1 3.9232 0.8934 -0.6636 29 1 5.3644 -0.1040 -0.9834 30 1 5.3627 0.0732 1.3752 31 1 4.5904 -1.4963 1.0891 32 1 3.5170 -1.3600 3.3583 33 1 4.4926 0.1204 3.5152 34 1 2.7345 0.1801 3.7872 35 1 1.5168 -2.5559 0.6761 36 1 1.5326 -3.3226 3.8921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:21 Heat of formation + Delta-G solvation = -71.120698 kcal Electronic energy + Delta-G solvation = -16107.625083 eV Core-core repulsion = 13783.935381 eV Total energy + Delta-G solvation = -2323.689702 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67507 -35.82018 -34.99290 -33.73549 -32.87632 -28.61877 -27.70495 -26.27956 -24.16074 -22.56824 -20.39310 -19.73517 -18.80238 -16.65499 -16.61626 -15.74833 -15.52227 -15.13976 -14.82397 -14.20880 -13.67876 -13.45910 -13.26284 -13.07225 -12.86413 -12.76897 -12.62570 -12.26306 -12.12982 -11.95611 -11.63062 -11.42097 -11.25263 -11.08545 -10.82586 -10.74926 -10.44541 -10.10385 -9.58653 -7.77708 -5.96651 1.41798 1.46289 1.49435 2.51457 3.33543 4.05880 4.11707 4.18137 4.35267 4.52049 4.61083 4.62647 4.71026 4.91761 4.97124 5.03528 5.09979 5.17084 5.18534 5.25404 5.38551 5.43908 5.47424 5.59956 5.68231 5.70762 5.74673 5.84517 5.93673 5.99917 6.18341 6.22104 6.44630 6.96531 7.58339 7.89311 9.11949 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036653 B = 0.014136 C = 0.012042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.743407 B = 1980.313957 C = 2324.545673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.112 4.112 3 H 0.046 0.954 4 C -0.090 4.090 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.097 4.097 8 C -0.065 4.065 9 H 0.039 0.961 10 C -0.118 4.118 11 C 0.261 3.739 12 O -0.529 6.529 13 C -0.551 4.551 14 H 0.045 0.955 15 C 0.046 3.954 16 N -0.861 5.861 17 Si 0.915 3.085 18 H -0.292 1.292 19 H -0.284 1.284 20 H -0.276 1.276 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.029 0.971 35 H 0.343 0.657 36 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 3.275 -6.978 7.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.131 4.131 3 H 0.065 0.935 4 C -0.128 4.128 5 C -0.153 4.153 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.084 4.084 9 H 0.057 0.943 10 C -0.176 4.176 11 C 0.221 3.779 12 O -0.331 6.331 13 C -0.590 4.590 14 H 0.064 0.936 15 C -0.156 4.156 16 N -0.497 5.497 17 Si 0.743 3.257 18 H -0.219 1.219 19 H -0.210 1.210 20 H -0.202 1.202 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.186 0.814 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.619 3.275 -6.690 7.896 hybrid contribution -1.579 -0.143 1.070 1.913 sum 1.041 3.132 -5.620 6.518 Atomic orbital electron populations 1.21652 0.95777 1.00769 0.98935 1.21683 0.95835 0.99042 0.96588 0.93508 1.21689 0.96040 0.99178 0.95884 1.21358 0.94301 1.00044 0.99596 1.21235 0.99397 0.98934 0.94709 1.20366 0.96860 1.00681 0.95575 1.19978 0.96093 0.97083 0.95247 0.94295 1.21655 0.96633 1.02742 0.96531 1.18349 0.90251 0.80130 0.89178 1.86394 1.35756 1.22057 1.88921 1.21783 1.19300 1.03189 1.14692 0.93648 1.25322 0.96695 0.96245 0.97387 1.70300 1.34024 1.10119 1.35294 0.86333 0.82503 0.76655 0.80209 1.21854 1.20994 1.20202 0.93999 0.93777 0.94295 0.92660 0.93257 0.92576 0.91426 0.92651 0.91400 0.93938 0.93486 0.92038 0.95937 0.95224 0.81387 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 7.92 71.98 0.57 -3.75 16 2 C -0.11 -4.36 2.03 -11.25 -0.02 -4.38 16 3 H 0.05 1.81 6.63 -2.38 -0.02 1.79 16 4 C -0.09 -3.00 4.69 31.32 0.15 -2.86 16 5 C -0.12 -3.79 5.29 30.14 0.16 -3.63 16 6 C -0.11 -3.41 5.61 30.20 0.17 -3.24 16 7 C -0.10 -3.76 4.35 28.74 0.13 -3.63 16 8 C -0.07 -2.84 1.87 -12.65 -0.02 -2.86 16 9 H 0.04 1.66 7.47 -2.38 -0.02 1.65 16 10 C -0.12 -5.57 7.82 71.98 0.56 -5.01 16 11 C 0.26 11.76 0.45 -11.94 -0.01 11.76 16 12 O -0.53 -24.84 6.31 -148.98 -0.94 -25.78 16 13 C -0.55 -27.81 5.05 25.60 0.13 -27.68 16 14 H 0.05 2.35 6.22 -2.91 -0.02 2.33 16 15 C 0.05 2.40 4.53 84.66 0.38 2.78 16 16 N -0.86 -46.41 9.55 21.45 0.20 -46.21 16 17 Si 0.91 42.30 29.54 68.60 2.03 44.32 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H 0.04 1.68 6.33 -2.38 -0.02 1.66 16 22 H 0.04 1.41 8.11 -2.39 -0.02 1.39 16 23 H 0.04 1.55 7.89 -2.39 -0.02 1.53 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.64 7.86 -2.39 -0.02 1.62 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 2.56 5.33 -2.39 -0.01 2.55 16 28 H 0.05 1.76 6.98 -2.39 -0.02 1.75 16 29 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.04 1.51 8.01 -2.39 -0.02 1.49 16 31 H 0.05 2.03 6.76 -2.39 -0.02 2.02 16 32 H 0.06 3.24 6.18 -2.39 -0.01 3.22 16 33 H 0.02 0.92 8.01 -2.39 -0.02 0.90 16 34 H 0.03 1.46 6.93 -2.39 -0.02 1.44 16 35 H 0.34 16.11 8.81 -74.06 -0.65 15.46 16 36 H 0.25 13.21 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -53.06 256.58 3.89 -49.17 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.40 Total: 20.99 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 2.19 Total: -42.50 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.20 Total: -46.21 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.94 Total: -25.78 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -53.06 3.89 -49.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.947 kcal (2) G-P(sol) polarization free energy of solvation -53.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds