Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.62471 * 2 1 4 4 C 1.54245 * 109.78774 * 239.51369 * 2 1 3 5 5 C 1.45534 * 112.40197 * 160.20801 * 4 2 1 6 6 C 1.54240 * 112.40849 * 61.93826 * 5 4 2 7 7 C 1.50471 * 108.52098 * 280.01160 * 6 5 4 8 8 C 1.54068 * 112.49914 * 94.15204 * 7 6 5 9 9 H 1.08997 * 108.81517 * 79.14373 * 8 7 6 10 10 C 1.52997 * 108.81388 * 197.42204 * 8 7 6 11 11 C 1.50479 * 109.62673 * 120.38838 * 2 1 3 12 12 O 1.42903 * 108.87734 * 93.27762 * 11 2 1 13 13 C 1.50696 * 108.87760 * 334.83608 * 11 2 1 14 14 H 1.08003 * 120.00072 * 351.40788 * 13 11 2 15 15 C 1.37875 * 119.99999 * 171.41727 * 13 11 2 16 16 N 1.31514 * 119.99799 * 180.25696 * 15 13 11 17 17 Si 1.86797 * 120.00028 * 0.24730 * 15 13 11 18 18 H 1.48506 * 109.46876 * 84.71532 * 17 15 13 19 19 H 1.48497 * 109.47271 * 204.71514 * 17 15 13 20 20 H 1.48498 * 109.47296 * 324.71860 * 17 15 13 21 21 H 1.08996 * 109.47158 * 309.77348 * 1 2 3 22 22 H 1.08998 * 109.46859 * 69.77680 * 1 2 3 23 23 H 1.09002 * 109.47294 * 189.77228 * 1 2 3 24 24 H 1.08999 * 108.89235 * 39.45276 * 4 2 1 25 25 H 1.08998 * 108.89513 * 280.96397 * 4 2 1 26 26 H 1.09000 * 108.89611 * 301.18255 * 5 4 2 27 27 H 1.09005 * 108.89359 * 182.69178 * 5 4 2 28 28 H 1.08999 * 109.62885 * 39.71646 * 6 5 4 29 29 H 1.08999 * 109.63299 * 160.30177 * 6 5 4 30 30 H 1.09005 * 108.87652 * 214.92836 * 7 6 5 31 31 H 1.09001 * 108.87706 * 333.47021 * 7 6 5 32 32 H 1.09009 * 109.47055 * 66.91757 * 10 8 7 33 33 H 1.09003 * 109.47489 * 186.91542 * 10 8 7 34 34 H 1.09000 * 109.47205 * 306.92128 * 10 8 7 35 35 H 0.96699 * 114.00115 * 302.97580 * 12 11 2 36 36 H 0.97002 * 119.99721 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0522 -0.7363 -1.2507 5 6 3.4313 -0.3910 -1.5623 6 6 4.4057 -0.7867 -0.4340 7 6 4.3377 0.2598 0.6451 8 6 3.3443 -0.1099 1.7631 9 1 3.8174 -0.8311 2.4295 10 6 3.0100 1.1508 2.5629 11 6 2.0355 -0.7170 1.2226 12 8 2.2636 -2.0886 0.8930 13 6 0.9837 -0.6456 2.2994 14 1 0.1137 -0.0201 2.1639 15 6 1.1320 -1.3786 3.4577 16 7 0.2116 -1.3201 4.3953 17 14 2.6402 -2.4548 3.6953 18 1 3.7543 -1.6338 4.2338 19 1 2.3236 -3.5469 4.6503 20 1 3.0418 -3.0392 2.3905 21 1 -0.3633 0.6574 0.7898 22 1 -0.3633 0.3552 -0.9643 23 1 -0.3634 -1.0128 0.1744 24 1 1.4224 -0.4769 -2.1017 25 1 1.9872 -1.8110 -1.0805 26 1 3.4977 0.6847 -1.7249 27 1 3.7251 -0.9035 -2.4783 28 1 4.1175 -1.7546 -0.0240 29 1 5.4204 -0.8404 -0.8285 30 1 5.3294 0.3820 1.0808 31 1 4.0296 1.2058 0.2000 32 1 2.4525 1.8438 1.9326 33 1 2.4061 0.8819 3.4296 34 1 3.9331 1.6251 2.8962 35 1 1.4851 -2.5441 0.5444 36 1 0.3162 -1.8355 5.2104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -52.751872 kcal Electronic energy + Delta-G solvation = -16153.732142 eV Core-core repulsion = 13830.838972 eV Total energy + Delta-G solvation = -2322.893170 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.45933 -34.62819 -33.43910 -32.41331 -31.44642 -27.63252 -26.06179 -24.59679 -22.24333 -21.30083 -19.80021 -18.00903 -16.86377 -15.46950 -15.09982 -14.54563 -13.90857 -13.85849 -13.02522 -12.76063 -12.49817 -12.09001 -11.83547 -11.76527 -11.54388 -11.11276 -11.08728 -10.80385 -10.58668 -10.23723 -10.11644 -9.87922 -9.64097 -9.55548 -9.44503 -9.38548 -8.43387 -8.40078 -7.80532 -6.02300 -4.08140 3.45248 3.57323 3.81189 4.61888 5.25959 5.30329 5.37640 5.42530 5.61797 5.87749 5.95790 5.98788 6.03594 6.18493 6.29147 6.48230 6.50072 6.52288 6.54417 6.64547 6.65254 6.76860 6.80535 6.87930 6.95474 7.03344 7.11003 7.21562 7.31866 7.41591 7.61119 7.80365 8.40810 8.93035 9.12290 9.64585 11.07216 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.016278 C = 0.014322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.552949 B = 1719.663448 C = 1954.554046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 H 0.058 0.942 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.124 4.124 7 C -0.111 4.111 8 C -0.076 4.076 9 H 0.057 0.943 10 C -0.128 4.128 11 C 0.228 3.772 12 O -0.571 6.571 13 C -0.548 4.548 14 H 0.086 0.914 15 C 0.082 3.918 16 N -0.898 5.898 17 Si 0.866 3.134 18 H -0.290 1.290 19 H -0.314 1.314 20 H -0.207 1.207 21 H 0.062 0.938 22 H 0.022 0.978 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.355 0.645 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 1.563 -8.923 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.115 4.115 3 H 0.076 0.924 4 C -0.155 4.155 5 C -0.141 4.141 6 C -0.161 4.161 7 C -0.149 4.149 8 C -0.094 4.094 9 H 0.075 0.925 10 C -0.185 4.185 11 C 0.189 3.811 12 O -0.378 6.378 13 C -0.586 4.586 14 H 0.104 0.896 15 C -0.121 4.121 16 N -0.536 5.536 17 Si 0.695 3.305 18 H -0.218 1.218 19 H -0.243 1.243 20 H -0.130 1.130 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.203 0.797 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.774 1.663 -8.567 10.464 hybrid contribution 0.193 -0.505 0.282 0.610 sum 5.966 1.158 -8.284 10.275 Atomic orbital electron populations 1.21808 0.95464 1.02315 0.98508 1.21353 0.95628 0.99277 0.95272 0.92352 1.20534 0.95444 1.02504 0.97066 1.20351 0.96206 0.99929 0.97578 1.21469 0.97157 1.01740 0.95757 1.21432 0.98293 0.98456 0.96717 1.21635 0.94983 0.97177 0.95629 0.92533 1.21739 0.99072 0.96373 1.01314 1.18808 0.91733 0.79117 0.91409 1.86698 1.39629 1.25945 1.85574 1.21788 1.07101 1.28931 1.00732 0.89601 1.24992 0.96028 0.95859 0.95243 1.69963 1.34510 1.41391 1.07691 0.87450 0.83250 0.80442 0.79314 1.21803 1.24255 1.12970 0.91957 0.95898 0.92573 0.94079 0.90850 0.93570 0.93769 0.89003 0.93874 0.93950 0.92962 0.93584 0.90540 0.95447 0.79717 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 7.91 37.16 0.29 -2.05 16 2 C -0.10 -1.83 2.11 -91.23 -0.19 -2.02 16 3 H 0.06 1.12 6.19 -51.93 -0.32 0.80 16 4 C -0.12 -1.95 4.59 -29.60 -0.14 -2.08 16 5 C -0.10 -1.60 5.26 -29.60 -0.16 -1.76 16 6 C -0.12 -2.08 5.61 -27.35 -0.15 -2.24 16 7 C -0.11 -2.00 4.68 -27.44 -0.13 -2.13 16 8 C -0.08 -1.60 1.63 -89.51 -0.15 -1.75 16 9 H 0.06 1.32 4.32 -51.93 -0.22 1.09 16 10 C -0.13 -2.68 8.29 37.16 0.31 -2.37 16 11 C 0.23 4.91 0.19 -92.48 -0.02 4.90 16 12 O -0.57 -12.07 5.10 -35.23 -0.18 -12.25 16 13 C -0.55 -14.07 5.92 -34.44 -0.20 -14.27 16 14 H 0.09 2.38 5.34 -52.48 -0.28 2.10 16 15 C 0.08 2.26 4.80 -17.82 -0.09 2.18 16 16 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 17 Si 0.87 21.79 24.09 -169.99 -4.09 17.70 16 18 H -0.29 -7.40 6.79 56.52 0.38 -7.02 16 19 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 20 H -0.21 -4.96 5.08 56.52 0.29 -4.68 16 21 H 0.06 1.28 6.30 -51.93 -0.33 0.96 16 22 H 0.02 0.37 7.94 -51.93 -0.41 -0.04 16 23 H 0.06 1.10 7.76 -51.93 -0.40 0.70 16 24 H 0.04 0.62 7.84 -51.93 -0.41 0.22 16 25 H 0.07 1.23 5.70 -51.93 -0.30 0.93 16 26 H 0.05 0.69 7.47 -51.93 -0.39 0.31 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.73 5.71 -51.93 -0.30 1.44 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.89 6.46 -51.93 -0.34 0.56 16 32 H 0.05 0.91 7.33 -51.92 -0.38 0.53 16 33 H 0.08 1.83 6.45 -51.93 -0.33 1.50 16 34 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 35 H 0.35 6.89 8.07 45.56 0.37 7.25 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 246.86 15.07 3.72 3.72 Total: -1.00 -28.27 246.86 -5.39 -33.67 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.00 Total: 6.79 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -0.62 Total: -23.59 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.18 Total: -12.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.09 Total: 17.70 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.27 -5.39 -33.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.083 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds