Wall clock time and date at job start Mon Mar 30 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.62471 * 2 1 4 4 C 1.54245 * 109.78774 * 239.51369 * 2 1 3 5 5 C 1.45534 * 112.40197 * 160.20801 * 4 2 1 6 6 C 1.54240 * 112.40849 * 61.93826 * 5 4 2 7 7 C 1.50471 * 108.52098 * 280.01160 * 6 5 4 8 8 C 1.54068 * 112.49914 * 94.15204 * 7 6 5 9 9 H 1.08997 * 108.81517 * 79.14373 * 8 7 6 10 10 C 1.52997 * 108.81388 * 197.42204 * 8 7 6 11 11 C 1.50479 * 109.62673 * 120.38838 * 2 1 3 12 12 O 1.42903 * 108.87734 * 93.27762 * 11 2 1 13 13 C 1.50696 * 108.87760 * 334.83608 * 11 2 1 14 14 H 1.08003 * 120.00072 * 351.40788 * 13 11 2 15 15 C 1.37875 * 119.99999 * 171.41727 * 13 11 2 16 16 N 1.31514 * 119.99799 * 180.25696 * 15 13 11 17 17 Si 1.86797 * 120.00028 * 0.24730 * 15 13 11 18 18 H 1.48506 * 109.46876 * 84.71532 * 17 15 13 19 19 H 1.48497 * 109.47271 * 204.71514 * 17 15 13 20 20 H 1.48498 * 109.47296 * 324.71860 * 17 15 13 21 21 H 1.08996 * 109.47158 * 309.77348 * 1 2 3 22 22 H 1.08998 * 109.46859 * 69.77680 * 1 2 3 23 23 H 1.09002 * 109.47294 * 189.77228 * 1 2 3 24 24 H 1.08999 * 108.89235 * 39.45276 * 4 2 1 25 25 H 1.08998 * 108.89513 * 280.96397 * 4 2 1 26 26 H 1.09000 * 108.89611 * 301.18255 * 5 4 2 27 27 H 1.09005 * 108.89359 * 182.69178 * 5 4 2 28 28 H 1.08999 * 109.62885 * 39.71646 * 6 5 4 29 29 H 1.08999 * 109.63299 * 160.30177 * 6 5 4 30 30 H 1.09005 * 108.87652 * 214.92836 * 7 6 5 31 31 H 1.09001 * 108.87706 * 333.47021 * 7 6 5 32 32 H 1.09009 * 109.47055 * 66.91757 * 10 8 7 33 33 H 1.09003 * 109.47489 * 186.91542 * 10 8 7 34 34 H 1.09000 * 109.47205 * 306.92128 * 10 8 7 35 35 H 0.96699 * 114.00115 * 302.97580 * 12 11 2 36 36 H 0.97002 * 119.99721 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0522 -0.7363 -1.2507 5 6 3.4313 -0.3910 -1.5623 6 6 4.4057 -0.7867 -0.4340 7 6 4.3377 0.2598 0.6451 8 6 3.3443 -0.1099 1.7631 9 1 3.8174 -0.8311 2.4295 10 6 3.0100 1.1508 2.5629 11 6 2.0355 -0.7170 1.2226 12 8 2.2636 -2.0886 0.8930 13 6 0.9837 -0.6456 2.2994 14 1 0.1137 -0.0201 2.1639 15 6 1.1320 -1.3786 3.4577 16 7 0.2116 -1.3201 4.3953 17 14 2.6402 -2.4548 3.6953 18 1 3.7543 -1.6338 4.2338 19 1 2.3236 -3.5469 4.6503 20 1 3.0418 -3.0392 2.3905 21 1 -0.3633 0.6574 0.7898 22 1 -0.3633 0.3552 -0.9643 23 1 -0.3634 -1.0128 0.1744 24 1 1.4224 -0.4769 -2.1017 25 1 1.9872 -1.8110 -1.0805 26 1 3.4977 0.6847 -1.7249 27 1 3.7251 -0.9035 -2.4783 28 1 4.1175 -1.7546 -0.0240 29 1 5.4204 -0.8404 -0.8285 30 1 5.3294 0.3820 1.0808 31 1 4.0296 1.2058 0.2000 32 1 2.4525 1.8438 1.9326 33 1 2.4061 0.8819 3.4296 34 1 3.9331 1.6251 2.8962 35 1 1.4851 -2.5441 0.5444 36 1 0.3162 -1.8355 5.2104 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889418.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:24 Heat of formation + Delta-G solvation = -71.140673 kcal Electronic energy + Delta-G solvation = -16154.529540 eV Core-core repulsion = 13830.838972 eV Total energy + Delta-G solvation = -2323.690568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03759 -36.17071 -35.06860 -34.20156 -33.24465 -29.07885 -27.95802 -26.22234 -23.86457 -22.87288 -21.15323 -19.77415 -18.64645 -17.18430 -16.87325 -16.20986 -15.62532 -15.27297 -14.77223 -14.37837 -14.08202 -13.65875 -13.54282 -13.35380 -13.21505 -12.75669 -12.71979 -12.61297 -12.20958 -11.85733 -11.76825 -11.49722 -11.27190 -11.04719 -10.92225 -10.87487 -10.51584 -10.24108 -9.57963 -8.19665 -6.24232 1.40482 1.49740 1.77120 2.51734 3.19517 3.79242 3.93546 4.03157 4.25365 4.44666 4.46164 4.53816 4.55904 4.70728 4.86579 4.94191 5.00887 5.02159 5.11262 5.20408 5.23423 5.31361 5.42442 5.47471 5.50243 5.54552 5.59340 5.64387 5.73822 5.82426 5.89586 6.01601 6.32843 6.85045 7.33086 7.55314 8.93389 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032193 B = 0.016278 C = 0.014322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.552949 B = 1719.663448 C = 1954.554046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.095 4.095 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.103 4.103 6 C -0.124 4.124 7 C -0.106 4.106 8 C -0.082 4.082 9 H 0.034 0.966 10 C -0.124 4.124 11 C 0.232 3.768 12 O -0.571 6.571 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.032 3.968 16 N -0.948 5.948 17 Si 0.913 3.087 18 H -0.297 1.297 19 H -0.331 1.331 20 H -0.183 1.183 21 H 0.034 0.966 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.363 0.637 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.975 1.812 -11.666 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.113 4.113 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.161 4.161 7 C -0.144 4.144 8 C -0.100 4.100 9 H 0.053 0.947 10 C -0.182 4.182 11 C 0.192 3.808 12 O -0.379 6.379 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.165 4.165 16 N -0.589 5.589 17 Si 0.744 3.256 18 H -0.225 1.225 19 H -0.261 1.261 20 H -0.105 1.105 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.212 0.788 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.524 1.912 -11.344 13.746 hybrid contribution -0.405 -0.513 1.109 1.288 sum 7.119 1.399 -10.234 12.545 Atomic orbital electron populations 1.21710 0.95779 1.00948 0.99136 1.21296 0.95303 0.99329 0.95415 0.92212 1.20476 0.96597 1.01773 0.96015 1.20347 0.94924 1.00834 0.97932 1.21457 0.98913 1.00026 0.95742 1.21388 0.97654 0.99420 0.95931 1.21665 0.95320 0.96417 0.96630 0.94740 1.21664 0.99675 0.96889 0.99931 1.18756 0.90919 0.79838 0.91240 1.86650 1.40026 1.25678 1.85594 1.22139 1.06900 1.26269 1.01172 0.92356 1.25601 0.97863 0.97565 0.95476 1.70093 1.36731 1.43557 1.08566 0.86748 0.80650 0.78644 0.79580 1.22491 1.26124 1.10485 0.94702 0.92920 0.93883 0.92172 0.91161 0.92616 0.91513 0.91083 0.91607 0.92732 0.91738 0.92831 0.94523 0.93055 0.78776 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 7.91 71.98 0.57 -3.76 16 2 C -0.09 -3.35 2.11 -11.19 -0.02 -3.38 16 3 H 0.06 2.12 6.19 -2.39 -0.01 2.10 16 4 C -0.11 -3.22 4.59 28.74 0.13 -3.08 16 5 C -0.10 -2.69 5.26 28.73 0.15 -2.53 16 6 C -0.12 -3.63 5.61 30.20 0.17 -3.47 16 7 C -0.11 -3.42 4.68 30.14 0.14 -3.28 16 8 C -0.08 -3.32 1.63 -10.07 -0.02 -3.33 16 9 H 0.03 1.55 4.32 -2.39 -0.01 1.54 16 10 C -0.12 -5.10 8.29 71.98 0.60 -4.50 16 11 C 0.23 9.66 0.19 -12.00 0.00 9.66 16 12 O -0.57 -23.00 5.10 -148.98 -0.76 -23.76 16 13 C -0.53 -27.43 5.92 25.60 0.15 -27.28 16 14 H 0.06 3.34 5.34 -2.91 -0.02 3.33 16 15 C 0.03 1.84 4.80 84.65 0.41 2.24 16 16 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 17 Si 0.91 45.75 24.09 68.60 1.65 47.40 16 18 H -0.30 -15.02 6.79 99.48 0.68 -14.35 16 19 H -0.33 -17.37 7.11 99.48 0.71 -16.67 16 20 H -0.18 -8.39 5.08 99.48 0.50 -7.89 16 21 H 0.03 1.44 6.30 -2.39 -0.02 1.42 16 22 H 0.05 1.59 7.94 -2.39 -0.02 1.57 16 23 H 0.04 1.65 7.76 -2.39 -0.02 1.63 16 24 H 0.06 1.54 7.84 -2.39 -0.02 1.52 16 25 H 0.07 2.09 5.70 -2.39 -0.01 2.08 16 26 H 0.06 1.38 7.47 -2.39 -0.02 1.36 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.07 2.42 5.71 -2.39 -0.01 2.41 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.06 1.93 6.46 -2.39 -0.02 1.91 16 32 H 0.05 2.06 7.33 -2.38 -0.02 2.05 16 33 H 0.04 1.77 6.45 -2.39 -0.02 1.75 16 34 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 35 H 0.36 13.40 8.07 -74.06 -0.60 12.80 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -61.67 246.86 3.70 -57.96 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.24 Total: 19.71 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 2.28 Total: -42.72 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.76 Total: -23.76 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.65 Total: 47.40 kcal Total: -61.67 3.70 -57.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889418.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.179 kcal (2) G-P(sol) polarization free energy of solvation -61.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds