Wall clock time and date at job start Mon Mar 30 2020 02:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.62793 * 2 1 4 4 C 1.54234 * 109.62954 * 120.39132 * 2 1 3 5 5 C 1.45539 * 112.33005 * 199.74646 * 4 2 1 6 6 C 1.54242 * 112.40248 * 297.91869 * 5 4 2 7 7 C 1.50471 * 108.44253 * 80.12102 * 6 5 4 8 8 C 1.54066 * 112.49791 * 265.83580 * 7 6 5 9 9 H 1.09004 * 108.81758 * 280.85541 * 8 7 6 10 10 C 1.53006 * 108.81596 * 162.57649 * 8 7 6 11 11 C 1.50476 * 109.62833 * 239.42156 * 2 1 3 12 12 O 1.42908 * 108.87710 * 266.81700 * 11 2 1 13 13 C 1.50702 * 108.87654 * 25.35821 * 11 2 1 14 14 H 1.08000 * 120.00032 * 5.36192 * 13 11 2 15 15 C 1.37876 * 119.99967 * 185.36387 * 13 11 2 16 16 N 1.31515 * 120.00000 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99943 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47113 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46967 * 120.00226 * 17 15 13 20 20 H 1.48503 * 109.47100 * 239.99451 * 17 15 13 21 21 H 1.08993 * 109.47427 * 289.58937 * 1 2 3 22 22 H 1.09003 * 109.47520 * 49.58967 * 1 2 3 23 23 H 1.09004 * 109.47390 * 169.58849 * 1 2 3 24 24 H 1.09007 * 108.89409 * 320.44846 * 4 2 1 25 25 H 1.08997 * 108.89921 * 79.04238 * 4 2 1 26 26 H 1.09005 * 108.89579 * 58.77288 * 5 4 2 27 27 H 1.09001 * 108.89476 * 177.25402 * 5 4 2 28 28 H 1.09005 * 109.67972 * 320.43052 * 6 5 4 29 29 H 1.09000 * 109.65871 * 199.79836 * 6 5 4 30 30 H 1.09002 * 108.87816 * 145.06123 * 7 6 5 31 31 H 1.09000 * 108.80092 * 26.55481 * 7 6 5 32 32 H 1.09005 * 109.46740 * 296.71067 * 10 8 7 33 33 H 1.08997 * 109.47070 * 56.70998 * 10 8 7 34 34 H 1.09000 * 109.47082 * 176.71229 * 10 8 7 35 35 H 0.96701 * 113.99846 * 179.97438 * 12 11 2 36 36 H 0.97002 * 119.99795 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0481 -0.7349 1.2531 5 6 3.4273 -0.3907 1.5653 6 6 4.4028 -0.7935 0.4404 7 6 4.3395 0.2507 -0.6411 8 6 3.3468 -0.1187 -1.7599 9 1 3.8189 -0.8427 -2.4240 10 6 3.0172 1.1412 -2.5630 11 6 2.0355 -0.7210 -1.2202 12 8 2.2615 -2.0921 -0.8866 13 6 0.9855 -0.6491 -2.2989 14 1 0.0922 -0.0621 -2.1447 15 6 1.1655 -1.3326 -3.4827 16 7 2.2531 -2.0477 -3.6704 17 14 -0.1356 -1.2428 -4.8201 18 1 -1.2546 -0.3792 -4.3649 19 1 0.4613 -0.6711 -6.0539 20 1 -0.6480 -2.6073 -5.1047 21 1 -0.3634 0.3445 0.9681 22 1 -0.3634 0.6662 -0.7825 23 1 -0.3634 -1.0108 -0.1857 24 1 1.4177 -0.4718 2.1026 25 1 1.9821 -1.8098 1.0845 26 1 3.4952 0.6855 1.7248 27 1 3.7192 -0.9007 2.4834 28 1 4.1126 -1.7617 0.0321 29 1 5.4166 -0.8492 0.8367 30 1 5.3322 0.3691 -1.0755 31 1 4.0338 1.1981 -0.1972 32 1 2.5175 1.8634 -1.9173 33 1 3.9384 1.5765 -2.9503 34 1 2.3609 0.8813 -3.3936 35 1 2.5892 -2.6271 -1.6225 36 1 2.3798 -2.5283 -4.5034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:26 Heat of formation + Delta-G solvation = -81.221217 kcal Electronic energy + Delta-G solvation = -16062.291182 eV Core-core repulsion = 13738.163489 eV Total energy + Delta-G solvation = -2324.127693 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67682 -36.13654 -34.61345 -33.99085 -33.06401 -28.98733 -27.63232 -26.17246 -23.89519 -22.65412 -20.96116 -19.75925 -18.49689 -17.15581 -16.27214 -15.90539 -15.64508 -14.79598 -14.69257 -14.18848 -13.95043 -13.76586 -13.33212 -13.15904 -12.99850 -12.76705 -12.57915 -12.33888 -12.27056 -11.95398 -11.77398 -11.52339 -11.23456 -10.97053 -10.94357 -10.65038 -10.57222 -10.28743 -9.51269 -8.02491 -6.10982 1.38158 1.44197 1.51315 2.46237 3.20550 4.02864 4.08982 4.23324 4.42391 4.55994 4.60992 4.63543 4.67167 4.77535 5.00279 5.05286 5.12076 5.12745 5.16543 5.25321 5.33559 5.35909 5.50396 5.53373 5.63767 5.70117 5.74647 5.77429 5.86096 5.93358 6.12838 6.28098 6.46001 6.93019 7.55659 7.75544 8.99298 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037290 B = 0.013486 C = 0.012128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.690781 B = 2075.773009 C = 2308.158671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.069 4.069 3 H 0.060 0.940 4 C -0.107 4.107 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.106 4.106 8 C -0.099 4.099 9 H 0.050 0.950 10 C -0.115 4.115 11 C 0.257 3.743 12 O -0.589 6.589 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.031 3.969 16 N -0.915 5.915 17 Si 0.934 3.066 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.288 1.288 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.365 0.635 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 4.044 6.172 7.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.139 4.139 6 C -0.159 4.159 7 C -0.144 4.144 8 C -0.118 4.118 9 H 0.068 0.932 10 C -0.173 4.173 11 C 0.218 3.782 12 O -0.398 6.398 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.167 4.167 16 N -0.557 5.557 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.215 1.215 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.216 0.784 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.768 4.149 6.629 8.017 hybrid contribution -0.483 -0.392 -1.884 1.985 sum 1.285 3.757 4.744 6.186 Atomic orbital electron populations 1.21743 0.95823 1.00657 0.99384 1.20832 0.95294 0.97788 0.94843 0.92205 1.20296 0.96487 1.01624 0.96047 1.20350 0.95022 1.00623 0.97868 1.21407 0.98367 1.00218 0.95890 1.21393 0.97962 0.98623 0.96405 1.21961 0.96993 0.97004 0.95889 0.93165 1.21583 0.98876 0.96901 0.99892 1.18399 0.90049 0.79426 0.90331 1.86156 1.88928 1.23489 1.41213 1.22467 1.05926 1.28654 1.00422 0.91735 1.25483 0.96404 0.95304 0.99550 1.69647 1.26934 1.32756 1.26408 0.85881 0.80457 0.77347 0.80107 1.19655 1.21200 1.21490 0.93087 0.93474 0.94487 0.92774 0.92292 0.92453 0.91971 0.91776 0.92022 0.93717 0.92695 0.93947 0.94830 0.93833 0.78429 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 7.87 71.98 0.57 -4.11 16 2 C -0.07 -2.80 2.18 -11.19 -0.02 -2.82 16 3 H 0.06 2.34 6.23 -2.39 -0.01 2.33 16 4 C -0.11 -3.90 4.61 28.73 0.13 -3.77 16 5 C -0.10 -3.24 5.25 28.74 0.15 -3.09 16 6 C -0.12 -4.25 5.61 30.20 0.17 -4.08 16 7 C -0.11 -3.93 4.68 30.14 0.14 -3.79 16 8 C -0.10 -4.39 1.77 -10.07 -0.02 -4.41 16 9 H 0.05 2.54 6.63 -2.39 -0.02 2.53 16 10 C -0.12 -4.91 8.37 71.98 0.60 -4.31 16 11 C 0.26 11.91 0.30 -12.00 0.00 11.90 16 12 O -0.59 -29.20 8.34 -148.98 -1.24 -30.44 16 13 C -0.54 -27.31 5.44 25.60 0.14 -27.17 16 14 H 0.06 3.30 5.03 -2.91 -0.01 3.28 16 15 C 0.03 1.60 4.37 84.65 0.37 1.97 16 16 N -0.92 -48.61 9.78 21.45 0.21 -48.40 16 17 Si 0.93 42.54 29.54 68.60 2.03 44.56 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 21 H 0.05 1.68 7.92 -2.39 -0.02 1.66 16 22 H 0.05 1.88 6.38 -2.39 -0.02 1.87 16 23 H 0.04 1.59 7.73 -2.38 -0.02 1.57 16 24 H 0.05 1.74 7.82 -2.38 -0.02 1.72 16 25 H 0.06 2.44 6.21 -2.39 -0.01 2.43 16 26 H 0.06 1.69 7.46 -2.38 -0.02 1.67 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 2.61 5.70 -2.38 -0.01 2.60 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.90 6.46 -2.39 -0.02 1.88 16 32 H 0.04 1.67 7.38 -2.38 -0.02 1.66 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 2.06 6.12 -2.39 -0.01 2.05 16 35 H 0.37 19.43 6.67 -74.06 -0.49 18.94 16 36 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -52.72 254.05 3.79 -48.94 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.57 Total: 29.00 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 2.23 Total: -43.66 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.21 Total: -48.40 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -1.24 Total: -30.44 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -52.72 3.79 -48.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.285 kcal (2) G-P(sol) polarization free energy of solvation -52.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds