Wall clock time and date at job start Mon Mar 30 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 C 1.52996 * 109.47217 * 120.00082 * 2 1 3 5 5 H 1.08994 * 109.47203 * 304.32979 * 4 2 1 6 6 C 1.50707 * 109.46933 * 184.33013 * 4 2 1 7 7 H 1.07996 * 119.99845 * 305.51156 * 6 4 2 8 8 C 1.37877 * 120.00119 * 125.50749 * 6 4 2 9 9 N 1.31521 * 119.99534 * 5.04581 * 8 6 4 10 10 Si 1.86797 * 120.00081 * 185.04178 * 8 6 4 11 11 H 1.48493 * 109.47245 * 60.00318 * 10 8 6 12 12 H 1.48501 * 109.46888 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46930 * 300.00062 * 10 8 6 14 14 N 1.46892 * 109.47119 * 64.33417 * 4 2 1 15 15 C 1.48559 * 111.00614 * 68.87289 * 14 4 2 16 16 C 1.54373 * 104.59936 * 159.04327 * 15 14 4 17 17 C 1.54264 * 105.05915 * 336.14434 * 16 15 14 18 18 H 1.09002 * 110.31967 * 118.89403 * 17 16 15 19 19 N 1.46897 * 110.32624 * 241.00167 * 17 16 15 20 20 C 1.48561 * 111.00227 * 184.29527 * 14 4 2 21 21 H 1.08998 * 109.46832 * 175.00779 * 1 2 3 22 22 H 1.09001 * 109.46606 * 295.00530 * 1 2 3 23 23 H 1.08997 * 109.47120 * 55.00896 * 1 2 3 24 24 H 1.09007 * 109.47103 * 240.00537 * 2 1 3 25 25 H 1.09003 * 109.46852 * 185.12581 * 3 2 1 26 26 H 1.09000 * 109.47217 * 305.12321 * 3 2 1 27 27 H 1.09002 * 109.47129 * 65.12720 * 3 2 1 28 28 H 0.96998 * 119.99120 * 180.02562 * 9 8 6 29 29 H 1.08999 * 110.41216 * 40.25889 * 15 14 4 30 30 H 1.09003 * 110.41094 * 277.82414 * 15 14 4 31 31 H 1.09002 * 110.32575 * 217.25381 * 16 15 14 32 32 H 1.08998 * 110.32730 * 95.04214 * 16 15 14 33 33 H 1.00895 * 111.00144 * 298.54819 * 19 17 16 34 34 H 1.00905 * 110.99646 * 62.50421 * 19 17 16 35 35 H 1.08991 * 110.41355 * 82.17211 * 20 14 4 36 36 H 1.09009 * 110.40705 * 319.73456 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6148 -0.2542 2.1375 6 6 3.5433 -0.6290 1.3039 7 1 4.1356 -0.9604 0.4639 8 6 4.1624 -0.1214 2.4265 9 7 3.4492 0.1895 3.4868 10 14 6.0141 0.1245 2.4412 11 1 6.3965 1.0702 1.3622 12 1 6.4294 0.6778 3.7552 13 1 6.6884 -1.1797 2.2184 14 7 1.6377 -2.1331 1.1980 15 6 2.3661 -2.8557 0.1236 16 6 2.2730 -4.3439 0.5234 17 6 2.0498 -4.3356 2.0498 18 1 1.0982 -4.8068 2.2957 19 7 3.1521 -5.0280 2.7305 20 6 2.0266 -2.8430 2.4437 21 1 -0.3633 -1.0238 -0.0894 22 1 -0.3632 0.4344 0.9314 23 1 -0.3633 0.5893 -0.8419 24 1 1.8934 -0.5138 -0.8901 25 1 3.1261 1.4439 -0.0918 26 1 1.6037 1.9822 -0.8405 27 1 1.7536 1.9292 0.9324 28 1 3.8848 0.5470 4.2764 29 1 3.4074 -2.5358 0.0887 30 1 1.8842 -2.6902 -0.8400 31 1 3.2015 -4.8602 0.2795 32 1 1.4311 -4.8192 0.0203 33 1 3.2042 -5.9939 2.4437 34 1 4.0293 -4.5555 2.5710 35 1 1.2892 -2.6679 3.2270 36 1 3.0149 -2.5211 2.7720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:03 Heat of formation + Delta-G solvation = -8.572459 kcal Electronic energy + Delta-G solvation = -15388.092757 eV Core-core repulsion = 13099.408102 eV Total energy + Delta-G solvation = -2288.684655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.44399 -35.40935 -32.40864 -32.09864 -28.92118 -27.05319 -26.34315 -25.03438 -22.85165 -20.53239 -19.60459 -18.33021 -16.42873 -15.67715 -15.13711 -14.54050 -14.26337 -13.38142 -13.02771 -12.83493 -12.59445 -12.20075 -11.71288 -11.48373 -11.43882 -11.24347 -10.94224 -10.88017 -10.62807 -10.36497 -10.26390 -10.01395 -9.79042 -9.62896 -9.23367 -8.84976 -8.56182 -8.20427 -7.06494 -6.04021 -4.14061 3.24899 3.31870 3.33777 4.36690 4.93605 5.18534 5.46183 5.47655 5.64279 5.76593 6.09336 6.14831 6.20256 6.25758 6.32134 6.44104 6.54666 6.68302 6.80354 6.84128 6.91246 6.93500 7.01715 7.18415 7.25342 7.33409 7.44355 7.61565 7.73539 7.82330 7.87701 8.17937 8.27259 8.59489 9.01554 9.52006 10.97865 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.015994 C = 0.010542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.083336 B = 1750.254651 C = 2655.498264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.123 4.123 4 C 0.185 3.815 5 H 0.078 0.922 6 C -0.536 4.536 7 H 0.052 0.948 8 C 0.078 3.922 9 N -0.883 5.883 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 N -0.512 5.512 15 C 0.035 3.965 16 C -0.157 4.157 17 C 0.084 3.916 18 H 0.075 0.925 19 N -0.843 5.843 20 C 0.057 3.943 21 H 0.053 0.947 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.263 0.737 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.330 0.670 34 H 0.341 0.659 35 H 0.061 0.939 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -4.884 -4.436 6.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.181 4.181 4 C 0.079 3.921 5 H 0.096 0.904 6 C -0.575 4.575 7 H 0.070 0.930 8 C -0.126 4.126 9 N -0.520 5.520 10 Si 0.709 3.291 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.204 1.204 14 N -0.236 5.236 15 C -0.094 4.094 16 C -0.197 4.197 17 C -0.028 4.028 18 H 0.093 0.907 19 N -0.372 5.372 20 C -0.071 4.071 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.706 -4.617 -3.629 6.465 hybrid contribution 2.405 0.092 -0.834 2.547 sum -0.301 -4.525 -4.463 6.363 Atomic orbital electron populations 1.21761 0.97308 1.00673 0.99453 1.21080 0.93342 0.95843 0.99466 1.21585 1.01359 0.96026 0.99129 1.19717 0.93386 0.84374 0.94637 0.90362 1.21404 0.92663 1.42539 1.00938 0.93027 1.24945 0.97539 0.94654 0.95492 1.69889 1.35449 1.43157 1.03494 0.86840 0.86469 0.78568 0.77241 1.20264 1.21273 1.20372 1.65835 1.51402 1.04749 1.01618 1.22884 0.99124 0.91308 0.96058 1.23144 0.99975 0.98344 0.98219 1.22275 0.93858 0.96423 0.90293 0.90726 1.58901 1.08100 1.05692 1.64488 1.22745 1.01745 0.89192 0.93457 0.92773 0.93720 0.95282 0.93692 0.92327 0.95684 0.93467 0.92689 0.92394 0.92678 0.92997 0.92445 0.85883 0.84545 0.92096 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.01 37.16 0.33 -2.22 16 2 C -0.08 -1.65 2.48 -90.62 -0.22 -1.88 16 3 C -0.12 -2.56 8.77 37.16 0.33 -2.23 16 4 C 0.18 4.39 1.67 -68.87 -0.12 4.28 16 5 H 0.08 2.14 6.96 -51.93 -0.36 1.78 16 6 C -0.54 -13.60 4.71 -34.44 -0.16 -13.76 16 7 H 0.05 1.34 6.46 -52.49 -0.34 1.00 16 8 C 0.08 2.04 4.99 -17.82 -0.09 1.95 16 9 N -0.88 -24.24 12.63 55.43 0.70 -23.54 16 10 Si 0.88 20.60 29.54 -169.99 -5.02 15.58 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 N -0.51 -11.11 4.88 -223.41 -1.09 -12.20 16 15 C 0.04 0.69 5.50 -2.19 -0.01 0.68 16 16 C -0.16 -2.62 6.77 -25.35 -0.17 -2.80 16 17 C 0.08 1.48 4.20 -66.33 -0.28 1.20 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 N -0.84 -13.64 9.21 -3.49 -0.03 -13.67 16 20 C 0.06 1.24 6.05 -2.18 -0.01 1.23 16 21 H 0.05 1.02 7.87 -51.93 -0.41 0.61 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.04 0.95 7.03 -51.92 -0.37 0.59 16 25 H 0.06 1.29 7.30 -51.93 -0.38 0.91 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.06 1.26 5.60 -51.93 -0.29 0.97 16 30 H 0.05 1.05 7.64 -51.93 -0.40 0.65 16 31 H 0.05 0.80 7.95 -51.93 -0.41 0.39 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.33 4.40 9.06 -39.29 -0.36 4.05 16 34 H 0.34 5.74 8.82 -39.29 -0.35 5.39 16 35 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.07 1.77 6.27 -51.92 -0.33 1.44 16 LS Contribution 278.00 15.07 4.19 4.19 Total: -1.00 -26.08 278.00 -7.74 -33.82 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.08 Total: 9.37 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.41 Total: -13.55 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.42 Total: -49.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.08 -7.74 -33.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.246 kcal (2) G-P(sol) polarization free energy of solvation -26.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds