Wall clock time and date at job start Mon Mar 30 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 C 1.52996 * 109.47217 * 120.00082 * 2 1 3 5 5 H 1.08994 * 109.47203 * 304.32979 * 4 2 1 6 6 C 1.50707 * 109.46933 * 184.33013 * 4 2 1 7 7 H 1.07996 * 119.99845 * 305.51156 * 6 4 2 8 8 C 1.37877 * 120.00119 * 125.50749 * 6 4 2 9 9 N 1.31521 * 119.99534 * 5.04581 * 8 6 4 10 10 Si 1.86797 * 120.00081 * 185.04178 * 8 6 4 11 11 H 1.48493 * 109.47245 * 60.00318 * 10 8 6 12 12 H 1.48501 * 109.46888 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46930 * 300.00062 * 10 8 6 14 14 N 1.46892 * 109.47119 * 64.33417 * 4 2 1 15 15 C 1.48559 * 111.00614 * 68.87289 * 14 4 2 16 16 C 1.54373 * 104.59936 * 159.04327 * 15 14 4 17 17 C 1.54264 * 105.05915 * 336.14434 * 16 15 14 18 18 H 1.09002 * 110.31967 * 118.89403 * 17 16 15 19 19 N 1.46897 * 110.32624 * 241.00167 * 17 16 15 20 20 C 1.48561 * 111.00227 * 184.29527 * 14 4 2 21 21 H 1.08998 * 109.46832 * 175.00779 * 1 2 3 22 22 H 1.09001 * 109.46606 * 295.00530 * 1 2 3 23 23 H 1.08997 * 109.47120 * 55.00896 * 1 2 3 24 24 H 1.09007 * 109.47103 * 240.00537 * 2 1 3 25 25 H 1.09003 * 109.46852 * 185.12581 * 3 2 1 26 26 H 1.09000 * 109.47217 * 305.12321 * 3 2 1 27 27 H 1.09002 * 109.47129 * 65.12720 * 3 2 1 28 28 H 0.96998 * 119.99120 * 180.02562 * 9 8 6 29 29 H 1.08999 * 110.41216 * 40.25889 * 15 14 4 30 30 H 1.09003 * 110.41094 * 277.82414 * 15 14 4 31 31 H 1.09002 * 110.32575 * 217.25381 * 16 15 14 32 32 H 1.08998 * 110.32730 * 95.04214 * 16 15 14 33 33 H 1.00895 * 111.00144 * 298.54819 * 19 17 16 34 34 H 1.00905 * 110.99646 * 62.50421 * 19 17 16 35 35 H 1.08991 * 110.41355 * 82.17211 * 20 14 4 36 36 H 1.09009 * 110.40705 * 319.73456 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6148 -0.2542 2.1375 6 6 3.5433 -0.6290 1.3039 7 1 4.1356 -0.9604 0.4639 8 6 4.1624 -0.1214 2.4265 9 7 3.4492 0.1895 3.4868 10 14 6.0141 0.1245 2.4412 11 1 6.3965 1.0702 1.3622 12 1 6.4294 0.6778 3.7552 13 1 6.6884 -1.1797 2.2184 14 7 1.6377 -2.1331 1.1980 15 6 2.3661 -2.8557 0.1236 16 6 2.2730 -4.3439 0.5234 17 6 2.0498 -4.3356 2.0498 18 1 1.0982 -4.8068 2.2957 19 7 3.1521 -5.0280 2.7305 20 6 2.0266 -2.8430 2.4437 21 1 -0.3633 -1.0238 -0.0894 22 1 -0.3632 0.4344 0.9314 23 1 -0.3633 0.5893 -0.8419 24 1 1.8934 -0.5138 -0.8901 25 1 3.1261 1.4439 -0.0918 26 1 1.6037 1.9822 -0.8405 27 1 1.7536 1.9292 0.9324 28 1 3.8848 0.5470 4.2764 29 1 3.4074 -2.5358 0.0887 30 1 1.8842 -2.6902 -0.8400 31 1 3.2015 -4.8602 0.2795 32 1 1.4311 -4.8192 0.0203 33 1 3.2042 -5.9939 2.4437 34 1 4.0293 -4.5555 2.5710 35 1 1.2892 -2.6679 3.2270 36 1 3.0149 -2.5211 2.7720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:02 Heat of formation + Delta-G solvation = -26.862335 kcal Electronic energy + Delta-G solvation = -15388.885865 eV Core-core repulsion = 13099.408102 eV Total energy + Delta-G solvation = -2289.477764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10465 -37.05168 -34.27966 -33.73482 -30.48997 -28.79139 -27.99734 -26.79936 -24.62199 -22.16594 -21.18318 -20.08531 -18.37300 -17.13447 -16.85923 -16.37530 -15.78408 -15.12266 -14.69641 -14.41521 -14.26216 -13.88158 -13.51199 -13.07352 -13.01666 -12.87151 -12.77292 -12.62300 -12.37821 -12.00201 -11.98196 -11.72620 -11.48721 -11.26574 -11.03290 -10.75555 -10.55322 -9.52260 -8.90172 -8.04182 -6.19799 1.36595 1.39514 1.44938 2.40851 3.14815 3.54600 3.91902 3.95550 4.15672 4.30191 4.40955 4.54515 4.68169 4.70467 4.83160 4.95160 4.98744 5.09008 5.14735 5.20458 5.24108 5.31226 5.36692 5.47210 5.48322 5.62205 5.71154 5.76364 5.90456 6.17255 6.30538 6.45909 6.66258 6.77100 7.01953 7.48157 8.95243 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.015994 C = 0.010542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.083336 B = 1750.254651 C = 2655.498264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.116 4.116 4 C 0.190 3.810 5 H 0.036 0.964 6 C -0.530 4.530 7 H 0.046 0.954 8 C 0.035 3.965 9 N -0.914 5.914 10 Si 0.932 3.068 11 H -0.274 1.274 12 H -0.290 1.290 13 H -0.273 1.273 14 N -0.511 5.511 15 C 0.035 3.965 16 C -0.144 4.144 17 C 0.094 3.906 18 H 0.086 0.914 19 N -0.845 5.845 20 C 0.059 3.941 21 H 0.054 0.946 22 H 0.032 0.968 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.350 0.650 34 H 0.338 0.662 35 H 0.040 0.960 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.840 -6.087 -6.044 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.097 4.097 3 C -0.174 4.174 4 C 0.083 3.917 5 H 0.054 0.946 6 C -0.569 4.569 7 H 0.064 0.936 8 C -0.166 4.166 9 N -0.553 5.553 10 Si 0.759 3.241 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.198 1.198 14 N -0.235 5.235 15 C -0.094 4.094 16 C -0.184 4.184 17 C -0.019 4.019 18 H 0.104 0.896 19 N -0.376 5.376 20 C -0.071 4.071 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.059 0.941 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.823 -5.845 -5.255 8.351 hybrid contribution 2.413 0.453 -0.348 2.479 sum -0.411 -5.392 -5.603 7.787 Atomic orbital electron populations 1.21645 0.95320 1.01211 1.00032 1.21048 0.95053 0.95629 0.98012 1.21510 1.00312 0.96126 0.99482 1.19543 0.92317 0.85648 0.94223 0.94588 1.21546 0.93638 1.41428 1.00283 0.93602 1.25517 1.00815 0.94891 0.95354 1.70021 1.36676 1.44624 1.03956 0.86017 0.82579 0.78544 0.76962 1.19898 1.21556 1.19835 1.65760 1.51509 1.03918 1.02313 1.22905 0.97465 0.93182 0.95815 1.23081 1.01891 0.96252 0.97197 1.22111 0.94979 0.93618 0.91149 0.89563 1.58811 1.07435 1.06803 1.64529 1.22638 0.98978 0.92310 0.93124 0.92647 0.94851 0.92539 0.93271 0.94132 0.92422 0.95358 0.93145 0.94690 0.91547 0.91207 0.90197 0.83613 0.84927 0.94141 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 9.01 71.98 0.65 -3.88 16 2 C -0.08 -3.25 2.48 -10.79 -0.03 -3.27 16 3 C -0.12 -4.76 8.77 71.98 0.63 -4.13 16 4 C 0.19 9.14 1.67 44.17 0.07 9.22 16 5 H 0.04 2.05 6.96 -2.39 -0.02 2.03 16 6 C -0.53 -27.28 4.71 25.60 0.12 -27.15 16 7 H 0.05 2.39 6.46 -2.91 -0.02 2.37 16 8 C 0.03 1.87 4.99 84.65 0.42 2.29 16 9 N -0.91 -51.96 12.63 21.45 0.27 -51.69 16 10 Si 0.93 42.80 29.54 68.60 2.03 44.83 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 N -0.51 -22.07 4.88 -860.75 -4.20 -26.28 16 15 C 0.03 1.32 5.50 86.45 0.48 1.80 16 16 C -0.14 -4.39 6.77 31.49 0.21 -4.18 16 17 C 0.09 3.15 4.20 45.81 0.19 3.34 16 18 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 19 N -0.85 -25.77 9.21 -164.97 -1.52 -27.29 16 20 C 0.06 2.56 6.05 86.45 0.52 3.09 16 21 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 2.00 7.03 -2.38 -0.02 1.99 16 25 H 0.04 1.76 7.30 -2.39 -0.02 1.75 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.03 1.49 5.60 -2.39 -0.01 1.48 16 30 H 0.07 2.36 7.64 -2.39 -0.02 2.34 16 31 H 0.07 1.91 7.95 -2.39 -0.02 1.89 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.35 8.31 9.06 -89.70 -0.81 7.50 16 34 H 0.34 10.93 8.82 -89.69 -0.79 10.14 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.86 6.27 -2.38 -0.01 1.84 16 Total: -1.00 -56.77 278.00 -0.70 -57.46 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.54 Total: 25.85 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 3.27 Total: -22.88 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -5.45 Total: -105.26 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -56.77 -0.70 -57.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.601 kcal (2) G-P(sol) polarization free energy of solvation -56.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds