Wall clock time and date at job start Mon Mar 30 2020 03:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46648 * 2 1 4 4 C 1.52998 * 109.46933 * 119.99765 * 2 1 3 5 5 H 1.09002 * 109.49163 * 300.00086 * 4 2 1 6 6 C 1.53051 * 109.48596 * 179.97438 * 4 2 1 7 7 N 1.46959 * 109.36246 * 181.61188 * 6 4 2 8 8 C 1.46901 * 110.99863 * 183.18486 * 7 6 4 9 9 C 1.50705 * 109.46714 * 169.99959 * 8 7 6 10 10 H 1.07998 * 120.00223 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99627 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00387 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99991 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46750 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47035 * 119.99605 * 13 11 9 16 16 H 1.48495 * 109.47215 * 239.99772 * 13 11 9 17 17 C 1.46958 * 110.88193 * 59.32006 * 7 6 4 18 18 C 1.53051 * 109.36194 * 300.68035 * 17 7 6 19 19 N 1.46950 * 109.36688 * 58.40206 * 18 17 7 20 20 H 1.09001 * 109.47331 * 300.00038 * 1 2 3 21 21 H 1.09008 * 109.46665 * 60.00102 * 1 2 3 22 22 H 1.09000 * 109.47185 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47331 * 239.99962 * 2 1 3 24 24 H 1.09000 * 109.47205 * 299.99384 * 3 2 1 25 25 H 1.08991 * 109.47553 * 60.00423 * 3 2 1 26 26 H 1.09007 * 109.46344 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.48856 * 301.57250 * 6 4 2 28 28 H 1.08996 * 109.49317 * 61.64774 * 6 4 2 29 29 H 1.08992 * 109.47309 * 289.99812 * 8 7 6 30 30 H 1.08995 * 109.47077 * 50.00335 * 8 7 6 31 31 H 0.96993 * 120.00415 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.48960 * 60.64509 * 17 7 6 33 33 H 1.08998 * 109.48957 * 180.71574 * 17 7 6 34 34 H 1.09004 * 109.48848 * 178.36731 * 18 17 7 35 35 H 1.09001 * 109.48833 * 298.43199 * 18 17 7 36 36 H 1.00900 * 111.00430 * 176.81086 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6768 -0.2076 2.1395 6 6 3.5705 -0.7220 1.2493 7 7 4.0573 -1.4487 2.4302 8 6 5.5237 -1.4069 2.5065 9 6 5.9726 -1.9417 3.8421 10 1 5.2417 -2.2792 4.5620 11 6 7.3165 -2.0000 4.1449 12 7 8.2066 -1.5894 3.2681 13 14 7.8729 -2.6622 5.8007 14 1 6.6855 -3.0564 6.6005 15 1 8.7443 -3.8465 5.5926 16 1 8.6313 -1.6107 6.5247 17 6 3.5693 -2.8349 2.4302 18 6 2.0388 -2.8341 2.4301 19 7 1.5520 -2.1074 1.2492 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 3.1300 1.4425 -0.0005 27 1 3.9339 -1.2115 0.3458 28 1 3.9347 0.3049 1.2787 29 1 5.9466 -2.0185 1.7096 30 1 5.8642 -0.3776 2.3943 31 1 9.1519 -1.6308 3.4810 32 1 3.9327 -3.3484 1.5400 33 1 3.9326 -3.3484 3.3204 34 1 1.6746 -3.8610 2.4008 35 1 1.6754 -2.3446 3.3337 36 1 0.5448 -2.1361 1.1967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075307.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:29 Heat of formation + Delta-G solvation = -30.024902 kcal Electronic energy + Delta-G solvation = -14757.883568 eV Core-core repulsion = 12468.268665 eV Total energy + Delta-G solvation = -2289.614903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32523 -37.01412 -35.11874 -34.09275 -30.79042 -29.60993 -28.01688 -26.21210 -24.43071 -23.51377 -21.07721 -20.56440 -18.51476 -17.80431 -16.58595 -16.13811 -15.81552 -15.40264 -15.23342 -14.85602 -14.61996 -14.23991 -13.84116 -13.38948 -13.27495 -12.94241 -12.72161 -12.63903 -12.58439 -12.30343 -12.08134 -11.96714 -11.67640 -11.51722 -11.30515 -11.01756 -10.65078 -9.43941 -9.06494 -8.23202 -6.34353 1.39864 1.40603 1.54592 2.38617 3.08617 3.20487 3.25545 3.89116 3.96282 4.11149 4.28403 4.33675 4.42687 4.50958 4.55108 4.68154 4.81486 4.84899 4.94672 4.98138 5.01643 5.06643 5.11970 5.18844 5.20895 5.29505 5.47606 5.49626 5.61396 5.97441 6.05552 6.26921 6.55527 6.61971 6.81778 7.35774 8.88623 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050406 B = 0.007131 C = 0.006523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.354847 B = 3925.355269 C = 4291.385113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 C -0.148 4.148 4 C 0.105 3.895 5 H 0.038 0.962 6 C 0.060 3.940 7 N -0.546 5.546 8 C 0.208 3.792 9 C -0.524 4.524 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.974 3.026 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.065 3.935 18 C 0.070 3.930 19 N -0.688 5.688 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.013 0.987 28 H 0.067 0.933 29 H -0.043 1.043 30 H 0.002 0.998 31 H 0.265 0.735 32 H 0.012 0.988 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 1.532 -4.511 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.005 4.005 5 H 0.056 0.944 6 C -0.068 4.068 7 N -0.270 5.270 8 C 0.082 3.918 9 C -0.562 4.562 10 H 0.082 0.918 11 C -0.198 4.198 12 N -0.577 5.577 13 Si 0.798 3.202 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.064 4.064 18 C -0.059 4.059 19 N -0.322 5.322 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.086 0.914 29 H -0.025 1.025 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.053 0.947 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.901 1.549 -4.521 15.649 hybrid contribution 0.873 -0.232 0.580 1.074 sum -14.028 1.317 -3.941 14.630 Atomic orbital electron populations 1.21801 0.93239 1.02327 1.02470 1.21089 0.97178 0.95702 0.96434 1.21875 1.00647 0.95474 1.02550 1.21478 0.92562 0.88826 0.97632 0.94436 1.22248 0.95798 0.98028 0.90757 1.62225 1.11453 1.14412 1.38949 1.19361 0.82783 0.94430 0.95250 1.21467 0.92075 1.41606 1.01057 0.91833 1.25980 0.96655 0.95685 1.01477 1.70101 1.01804 1.48643 1.37114 0.85263 0.78348 0.77958 0.78609 1.18597 1.20270 1.20247 1.22027 0.95408 0.89378 0.99540 1.21939 0.93213 0.99411 0.91385 1.60511 1.16198 1.13887 1.41652 0.92575 0.91191 0.91794 0.91342 0.90811 0.92444 0.93805 0.96858 0.91423 1.02527 0.97995 0.92591 0.97018 0.91353 0.88318 0.94661 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.86 71.98 0.64 -1.81 16 2 C -0.08 -1.99 2.69 -10.79 -0.03 -2.01 16 3 C -0.15 -3.30 8.84 71.98 0.64 -2.66 16 4 C 0.11 3.17 2.24 44.92 0.10 3.27 16 5 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 6 C 0.06 2.38 4.49 86.31 0.39 2.77 16 7 N -0.55 -25.46 4.70 -900.28 -4.23 -29.69 16 8 C 0.21 11.79 4.72 85.56 0.40 12.20 16 9 C -0.52 -30.76 8.47 25.60 0.22 -30.55 16 10 H 0.06 3.65 7.13 -2.91 -0.02 3.63 16 11 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 12 N -0.94 -57.83 13.29 21.45 0.28 -57.55 16 13 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 14 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 C 0.07 2.70 5.43 86.31 0.47 3.17 16 18 C 0.07 2.17 6.72 86.31 0.58 2.75 16 19 N -0.69 -19.37 6.52 -491.14 -3.20 -22.57 16 20 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 22 H 0.06 1.03 6.60 -2.39 -0.02 1.01 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.12 6.47 -2.38 -0.02 1.11 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 2.68 6.45 -2.39 -0.02 2.66 16 29 H -0.04 -2.66 8.12 -2.39 -0.02 -2.68 16 30 H 0.00 0.12 8.03 -2.39 -0.02 0.10 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 3.02 6.79 -2.39 -0.02 3.00 16 34 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.35 7.71 6.90 -89.69 -0.62 7.09 16 Total: -1.00 -66.27 279.49 -0.84 -67.12 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.42 Total: 8.07 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 3.86 Total: -12.42 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -7.15 Total: -109.81 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.27 -0.84 -67.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075307.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.092 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds