Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 C 1.52997 * 109.47307 * 120.00135 * 2 1 3 5 5 C 1.52995 * 109.47129 * 66.95727 * 4 2 1 6 6 H 1.08997 * 109.51839 * 304.41216 * 5 4 2 7 7 C 1.53241 * 109.49480 * 64.48248 * 5 4 2 8 8 N 1.47076 * 108.52196 * 173.79003 * 7 5 4 9 9 C 1.36945 * 120.88346 * 128.79485 * 8 7 5 10 10 H 1.08000 * 119.99633 * 331.79093 * 9 8 7 11 11 C 1.38806 * 119.99913 * 151.78877 * 9 8 7 12 12 N 1.31622 * 120.00570 * 345.86324 * 11 9 8 13 13 Si 1.86799 * 119.99678 * 165.86249 * 11 9 8 14 14 H 1.48502 * 109.47487 * 59.99871 * 13 11 9 15 15 H 1.48498 * 109.47437 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47294 * 300.00113 * 13 11 9 17 17 C 1.47081 * 118.23916 * 308.81132 * 8 7 5 18 18 C 1.53237 * 108.51785 * 51.18661 * 17 8 7 19 19 N 1.46898 * 109.34555 * 306.17156 * 18 17 8 20 20 H 1.08995 * 109.47691 * 58.27897 * 1 2 3 21 21 H 1.09002 * 109.47001 * 178.28911 * 1 2 3 22 22 H 1.09007 * 109.46804 * 298.27714 * 1 2 3 23 23 H 1.09000 * 109.46718 * 240.00191 * 2 1 3 24 24 H 1.08995 * 109.46910 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46905 * 300.00284 * 3 2 1 26 26 H 1.09000 * 109.47225 * 60.00502 * 3 2 1 27 27 H 1.08999 * 109.47274 * 306.95432 * 4 2 1 28 28 H 1.09002 * 109.47003 * 186.95595 * 4 2 1 29 29 H 1.09000 * 109.62877 * 54.08102 * 7 5 4 30 30 H 1.09000 * 109.79173 * 293.59323 * 7 5 4 31 31 H 0.96996 * 119.99851 * 180.02562 * 12 11 9 32 32 H 1.08991 * 109.63079 * 291.47838 * 17 8 7 33 33 H 1.09005 * 109.63016 * 170.89641 * 17 8 7 34 34 H 1.08999 * 109.49715 * 186.20795 * 18 17 8 35 35 H 1.09006 * 109.49545 * 66.13187 * 18 17 8 36 36 H 1.00894 * 111.00829 * 187.25350 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6778 -2.2053 1.1649 6 1 0.6023 -2.3101 1.0217 7 6 2.4155 -2.8455 -0.0158 8 7 2.1718 -4.2957 0.0119 9 6 1.7286 -4.9554 -1.1034 10 1 1.1351 -4.4334 -1.8393 11 6 2.0422 -6.2950 -1.2878 12 7 2.9802 -6.8582 -0.5561 13 14 1.1329 -7.2984 -2.5745 14 1 1.3434 -6.6929 -3.9141 15 1 1.6501 -8.6904 -2.5732 16 1 -0.3181 -7.3097 -2.2590 17 6 2.4164 -5.0186 1.2692 18 6 1.6786 -4.2928 2.3993 19 7 2.0744 -2.8782 2.4090 20 1 -0.3634 0.5403 -0.8741 21 1 -0.3633 -1.0272 -0.0307 22 1 -0.3633 0.4869 0.9051 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 1.5787 -0.2844 2.1348 28 1 3.1229 -0.6147 1.3136 29 1 3.4846 -2.6522 0.0721 30 1 2.0441 -2.4297 -0.9524 31 1 3.1995 -7.7942 -0.6853 32 1 3.4855 -5.0341 1.4807 33 1 2.0424 -6.0389 1.1837 34 1 1.9372 -4.7494 3.3547 35 1 0.6031 -4.3685 2.2390 36 1 1.6958 -2.4022 3.2141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096900.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = -13.665571 kcal Electronic energy + Delta-G solvation = -14959.676713 eV Core-core repulsion = 12670.771203 eV Total energy + Delta-G solvation = -2288.905509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.83185 -37.12413 -35.29735 -32.78074 -31.94684 -28.12282 -27.95888 -27.17836 -24.46445 -23.21322 -21.08331 -20.29088 -18.78589 -17.21858 -16.66069 -16.12671 -15.73373 -15.27866 -15.06547 -14.89241 -14.32249 -14.15985 -13.93188 -13.16249 -13.01063 -12.94200 -12.71355 -12.53439 -12.39906 -12.19192 -12.04197 -11.92827 -11.61146 -11.45538 -11.22501 -11.12993 -10.61051 -9.38290 -8.66754 -7.89146 -5.37468 1.44203 1.46826 1.54011 2.48461 3.23063 3.29617 3.63106 3.99028 4.11670 4.19277 4.29883 4.46865 4.48270 4.60404 4.64223 4.75751 4.85603 4.90622 4.95416 5.01550 5.06392 5.11190 5.16315 5.20822 5.36703 5.43400 5.55323 5.57354 5.58547 5.66870 6.17061 6.36305 6.68220 7.11214 7.81314 8.36758 9.17175 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035412 B = 0.008817 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.493192 B = 3174.834367 C = 3655.890678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.092 4.092 5 C 0.082 3.918 6 H 0.028 0.972 7 C 0.155 3.845 8 N -0.616 5.616 9 C -0.269 4.269 10 H 0.065 0.935 11 C -0.051 4.051 12 N -0.937 5.937 13 Si 0.972 3.028 14 H -0.274 1.274 15 H -0.291 1.291 16 H -0.277 1.277 17 C 0.182 3.818 18 C 0.050 3.950 19 N -0.685 5.685 20 H 0.060 0.940 21 H 0.037 0.963 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.006 0.994 30 H 0.054 0.946 31 H 0.251 0.749 32 H -0.005 1.005 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.016 0.984 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 12.987 4.248 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.131 4.131 5 C -0.029 4.029 6 H 0.046 0.954 7 C 0.029 3.971 8 N -0.340 5.340 9 C -0.399 4.399 10 H 0.083 0.917 11 C -0.247 4.247 12 N -0.583 5.583 13 Si 0.799 3.201 14 H -0.200 1.200 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.056 3.944 18 C -0.081 4.081 19 N -0.317 5.317 20 H 0.079 0.921 21 H 0.056 0.944 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.023 0.977 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.013 0.987 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.941 12.690 4.009 13.880 hybrid contribution -1.015 -0.999 -0.587 1.540 sum -4.956 11.692 3.422 13.152 Atomic orbital electron populations 1.21840 0.95008 1.00965 1.02271 1.21141 0.96202 0.96945 0.97631 1.21770 1.00923 0.94567 1.02321 1.21542 1.01289 0.91738 0.98509 1.21927 0.96351 0.94195 0.90434 0.95402 1.21148 0.95845 0.83858 0.96241 1.44399 1.77747 1.03616 1.08194 1.19500 1.25562 0.94272 1.00522 0.91735 1.25889 0.98021 0.99688 1.01053 1.70173 1.31727 1.12217 1.44190 0.85281 0.78281 0.77426 0.79086 1.20015 1.21671 1.20322 1.20652 0.94922 0.95044 0.83743 1.22420 0.96531 0.89532 0.99568 1.60237 1.64569 1.02384 1.04542 0.92069 0.94399 0.91689 0.92572 0.92758 0.92110 0.91736 0.90513 0.91884 0.97653 0.92754 0.93959 0.98733 0.92512 0.89714 0.96527 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.95 71.98 0.64 -2.67 16 2 C -0.10 -2.47 2.80 -10.79 -0.03 -2.50 16 3 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 4 C -0.09 -2.49 4.37 30.59 0.13 -2.36 16 5 C 0.08 2.91 2.53 44.99 0.11 3.02 16 6 H 0.03 1.05 6.49 -2.39 -0.02 1.04 16 7 C 0.15 6.95 5.55 86.35 0.48 7.43 16 8 N -0.62 -33.16 3.03 -698.14 -2.12 -35.28 16 9 C -0.27 -15.49 9.63 84.03 0.81 -14.69 16 10 H 0.06 3.62 7.87 -2.91 -0.02 3.59 16 11 C -0.05 -2.96 4.99 84.86 0.42 -2.54 16 12 N -0.94 -57.28 11.09 21.65 0.24 -57.04 16 13 Si 0.97 45.92 29.58 68.60 2.03 47.95 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 C 0.18 9.45 5.39 86.35 0.47 9.92 16 18 C 0.05 2.01 6.70 86.38 0.58 2.59 16 19 N -0.68 -24.17 6.49 -490.73 -3.18 -27.35 16 20 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.04 1.03 6.62 -2.39 -0.02 1.02 16 22 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 23 H 0.06 1.61 6.39 -2.39 -0.02 1.60 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.05 2.38 6.56 -2.39 -0.02 2.36 16 31 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 32 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.06 3.25 6.15 -2.38 -0.01 3.24 16 34 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.02 0.67 8.14 -2.38 -0.02 0.66 16 36 H 0.35 9.71 8.77 -89.70 -0.79 8.93 16 Total: -1.00 -65.33 278.32 1.50 -63.83 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.25 Total: 11.69 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 4.28 Total: -3.80 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -5.06 Total: -119.66 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -65.33 1.50 -63.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096900.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.162 kcal (2) G-P(sol) polarization free energy of solvation -65.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds