Wall clock time and date at job start Mon Mar 30 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46938 * 2 1 4 4 O 1.42895 * 109.47236 * 119.99727 * 2 1 3 5 5 C 1.42902 * 114.00070 * 149.99911 * 4 2 1 6 6 C 1.52998 * 109.46783 * 150.00198 * 5 4 2 7 7 C 1.53005 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47274 * 300.00064 * 7 6 5 9 9 C 1.50700 * 109.47257 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47088 * 89.99795 * 13 11 9 15 15 H 1.48495 * 109.47293 * 209.99997 * 13 11 9 16 16 H 1.48507 * 109.47015 * 329.99955 * 13 11 9 17 17 C 1.53003 * 109.47195 * 59.99743 * 8 7 6 18 18 C 1.52994 * 109.46921 * 270.00166 * 5 4 2 19 19 H 1.09003 * 109.47388 * 300.00361 * 1 2 3 20 20 H 1.09000 * 109.47228 * 59.99678 * 1 2 3 21 21 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47495 * 240.00013 * 2 1 3 23 23 H 1.08998 * 109.46972 * 299.99942 * 3 2 1 24 24 H 1.08993 * 109.47277 * 60.00177 * 3 2 1 25 25 H 1.09004 * 109.46948 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.46912 * 30.00323 * 5 4 2 27 27 H 1.09000 * 109.47603 * 60.00359 * 6 5 4 28 28 H 1.08998 * 109.47444 * 299.99940 * 6 5 4 29 29 H 1.09004 * 109.47166 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.46988 * 60.00077 * 7 6 5 31 31 H 1.08997 * 109.47279 * 300.00213 * 8 7 6 32 32 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 33 33 H 1.09005 * 109.46932 * 60.00069 * 17 8 7 34 34 H 1.08998 * 109.47453 * 180.02562 * 17 8 7 35 35 H 1.09000 * 109.47301 * 299.99541 * 18 5 4 36 36 H 1.08999 * 109.47498 * 60.00509 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9886 6 6 4.0210 -1.3469 2.3191 7 6 5.3694 -2.0444 2.1286 8 6 5.1385 -3.4787 1.6490 9 6 6.4667 -4.1654 1.4607 10 1 7.3838 -3.6320 1.6625 11 6 6.5110 -5.4744 1.0297 12 7 5.3940 -6.1254 0.7882 13 14 8.1572 -6.3259 0.7971 14 1 8.5544 -6.9903 2.0644 15 1 8.0412 -7.3422 -0.2794 16 1 9.1850 -5.3219 0.4213 17 6 4.3834 -3.4562 0.3184 18 6 3.0355 -2.7587 0.5087 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.6766 1.9563 -0.8900 24 1 1.6767 1.9564 0.8899 25 1 3.1300 1.4426 -0.0005 26 1 3.8530 -0.7830 0.2469 27 1 3.4340 -1.8884 3.0610 28 1 4.1852 -0.3251 2.6611 29 1 5.9076 -2.0600 3.0764 30 1 5.9567 -1.5032 1.3866 31 1 4.5512 -4.0198 2.3908 32 1 5.4253 -7.0462 0.4847 33 1 4.9707 -2.9151 -0.4235 34 1 4.2184 -4.4781 -0.0231 35 1 2.4485 -3.3002 1.2505 36 1 2.4976 -2.7428 -0.4392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:49 Heat of formation + Delta-G solvation = -84.181314 kcal Electronic energy + Delta-G solvation = -14744.403602 eV Core-core repulsion = 12420.147549 eV Total energy + Delta-G solvation = -2324.256052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75973 -36.36949 -33.00815 -31.83372 -29.74922 -28.63339 -27.15594 -24.48510 -21.79129 -21.16820 -20.55426 -18.71876 -16.52559 -16.28364 -15.08342 -14.59675 -14.44146 -13.47888 -13.25857 -13.00010 -12.71231 -12.38681 -12.23503 -12.12928 -11.69617 -11.44710 -11.20361 -11.05242 -10.79873 -10.65239 -10.43147 -10.21618 -10.14493 -10.00751 -9.36665 -9.21872 -8.75858 -8.56884 -8.26148 -5.94945 -4.01078 3.32177 3.38914 3.42051 4.02405 4.46593 5.01451 5.13862 5.32770 5.34170 5.47323 5.61150 5.63179 5.73745 5.83199 5.85368 5.94243 6.17574 6.20351 6.28516 6.39110 6.39739 6.44585 6.66658 6.71530 6.79440 6.97657 7.16151 7.26857 7.52645 7.76276 7.78542 8.05376 8.18650 8.50397 9.03271 9.63380 11.10783 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.061075 B = 0.006771 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.345548 B = 4134.252831 C = 4330.326431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.173 4.173 4 O -0.384 6.384 5 C 0.094 3.906 6 C -0.110 4.110 7 C -0.106 4.106 8 C 0.046 3.954 9 C -0.512 4.512 10 H 0.054 0.946 11 C 0.060 3.940 12 N -0.891 5.891 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.107 4.107 18 C -0.135 4.135 19 H 0.060 0.940 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.027 0.973 32 H 0.259 0.741 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 10.530 -2.026 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.231 4.231 4 O -0.304 6.304 5 C 0.037 3.963 6 C -0.148 4.148 7 C -0.144 4.144 8 C 0.028 3.972 9 C -0.551 4.551 10 H 0.072 0.928 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.145 4.145 18 C -0.173 4.173 19 H 0.079 0.921 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.704 10.348 -1.911 12.477 hybrid contribution 1.004 -0.511 -0.463 1.217 sum -5.700 9.837 -2.373 11.615 Atomic orbital electron populations 1.21844 0.94251 1.02537 1.01855 1.21999 0.94555 0.92142 0.89186 1.22308 1.01645 0.97217 1.01921 1.87917 1.37940 1.69708 1.34790 1.22258 0.83348 0.92953 0.97783 1.21614 0.97352 0.99828 0.95983 1.21616 0.93758 0.98793 1.00237 1.18684 0.95561 0.89741 0.93228 1.21238 0.92477 0.96888 1.44461 0.92777 1.24978 0.96169 0.97410 0.95503 1.69884 1.25836 1.10833 1.46449 0.86640 0.84474 0.79385 0.77765 1.20744 1.21314 1.19999 1.21584 0.91782 1.01382 0.99765 1.22108 1.00469 0.95183 0.99563 0.92108 0.91829 0.92041 0.92434 0.92190 0.92088 0.92509 0.93071 0.91897 0.93195 0.92952 0.93436 0.95534 0.93097 0.94936 0.88845 0.92159 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.56 37.16 0.36 -1.36 16 2 C 0.08 1.10 3.13 -26.73 -0.08 1.01 16 3 C -0.17 -2.06 9.52 37.16 0.35 -1.71 16 4 O -0.38 -6.61 9.63 -35.23 -0.34 -6.95 16 5 C 0.09 1.72 2.40 -26.74 -0.06 1.65 16 6 C -0.11 -2.07 5.57 -26.73 -0.15 -2.21 16 7 C -0.11 -2.25 5.14 -26.73 -0.14 -2.39 16 8 C 0.05 1.16 2.10 -91.77 -0.19 0.97 16 9 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 10 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 11 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -25.61 11.33 55.43 0.63 -24.98 16 13 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.11 -2.54 4.98 -26.75 -0.13 -2.68 16 18 C -0.14 -2.75 5.53 -26.76 -0.15 -2.89 16 19 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.80 7.62 -51.93 -0.40 0.41 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 26 H 0.05 0.92 7.62 -51.93 -0.40 0.52 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 2.49 6.08 -51.93 -0.32 2.18 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.77 7.96 -51.93 -0.41 0.36 16 LS Contribution 284.63 15.07 4.29 4.29 Total: -1.00 -28.35 284.63 -7.58 -35.93 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.55 Total: -2.16 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -0.59 Total: -22.46 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.63 Total: -24.98 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.34 Total: -6.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.35 -7.58 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.255 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds