Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00177 * 2 1 4 4 H 1.09004 * 109.47340 * 329.99812 * 3 2 1 5 5 C 1.53000 * 109.47621 * 89.99763 * 3 2 1 6 6 C 1.52997 * 109.47060 * 59.99980 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 C 1.53002 * 109.46982 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47063 * 64.99850 * 10 8 7 12 12 C 1.50702 * 109.46809 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00238 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99531 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47331 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47239 * 119.99739 * 16 14 12 19 19 H 1.48510 * 109.46958 * 239.99640 * 16 14 12 20 20 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 21 21 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46849 * 300.00373 * 1 2 3 23 23 H 1.08997 * 109.47063 * 60.00040 * 1 2 3 24 24 H 1.09002 * 109.47398 * 180.02562 * 5 3 2 25 25 H 1.09001 * 109.47194 * 300.00330 * 5 3 2 26 26 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 28 28 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 30 30 H 1.09000 * 109.47173 * 184.99606 * 10 8 7 31 31 H 1.09000 * 109.47089 * 304.99682 * 10 8 7 32 32 H 1.08996 * 109.47287 * 299.99590 * 11 10 8 33 33 H 1.09000 * 109.47306 * 59.99965 * 11 10 8 34 34 H 0.97006 * 119.99913 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.47194 * 179.97438 * 20 8 7 36 36 H 1.09002 * 109.46695 * 59.99734 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.1515 0.7975 2.1638 7 6 4.5001 0.7551 1.4426 8 6 4.2927 0.2892 0.0000 9 1 3.8493 -0.7066 0.0001 10 6 5.6413 0.2474 -0.7214 11 6 6.5320 -0.8164 -0.0764 12 6 7.8605 -0.8571 -0.7866 13 1 8.0505 -0.1910 -1.6153 14 6 8.8332 -1.7452 -0.3791 15 7 8.6017 -2.5566 0.6298 16 14 10.4797 -1.7961 -1.2597 17 1 10.4879 -0.7907 -2.3525 18 1 11.5665 -1.4888 -0.2956 19 1 10.6935 -3.1499 -1.8317 20 6 3.3589 1.2631 -0.7213 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.6607 2.7674 1.4424 25 1 1.2569 1.8015 1.9563 26 1 3.2990 1.1291 3.1915 27 1 2.7081 -0.1983 2.1638 28 1 5.1652 0.0609 1.9562 29 1 4.9435 1.7509 1.4425 30 1 5.4842 0.0017 -1.7716 31 1 6.1248 1.2213 -0.6445 32 1 6.6892 -0.5707 0.9738 33 1 6.0485 -1.7903 -0.1533 34 1 9.2861 -3.1813 0.9168 35 1 3.2116 0.9315 -1.7490 36 1 3.8023 2.2589 -0.7213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = -86.742091 kcal Electronic energy + Delta-G solvation = -14560.050331 eV Core-core repulsion = 12235.683235 eV Total energy + Delta-G solvation = -2324.367096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25291 -36.31613 -33.54588 -31.83760 -30.11731 -28.42781 -26.46268 -24.73951 -22.36938 -21.70352 -19.82223 -19.15548 -16.35417 -15.84544 -15.54533 -15.24627 -14.51016 -14.26157 -13.83359 -13.23660 -12.60866 -12.45432 -12.34296 -12.02227 -11.69430 -11.56050 -11.18974 -11.07239 -10.89386 -10.60814 -10.47784 -10.13018 -9.97142 -9.88441 -9.48494 -9.25597 -8.98625 -8.81163 -8.24485 -5.91270 -3.92688 3.35791 3.42960 3.47462 3.90596 4.52893 4.92476 4.96846 5.10795 5.29358 5.32391 5.44184 5.50091 5.58029 5.63660 5.69292 5.83139 5.85102 5.94393 6.06940 6.24969 6.31759 6.43560 6.54649 6.72443 6.73214 6.82548 6.97258 7.20538 7.30219 7.38049 7.80937 7.99097 8.11719 8.54855 9.15468 9.70636 11.20100 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.056248 B = 0.006024 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.673214 B = 4647.060343 C = 4725.229892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.090 3.910 4 H 0.052 0.948 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.081 4.081 9 H 0.072 0.928 10 C -0.106 4.106 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.111 4.111 21 H 0.082 0.918 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.019 0.981 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.063 0.937 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.651 8.064 0.587 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.032 3.968 4 H 0.070 0.930 5 C -0.176 4.176 6 C -0.151 4.151 7 C -0.150 4.150 8 C -0.100 4.100 9 H 0.091 0.909 10 C -0.144 4.144 11 C -0.017 4.017 12 C -0.556 4.556 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.148 4.148 21 H 0.100 0.900 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.457 7.765 0.684 16.424 hybrid contribution 0.703 0.142 -0.405 0.823 sum -13.754 7.907 0.280 15.867 Atomic orbital electron populations 1.22736 0.82216 1.02351 0.99320 1.88009 1.18511 1.27868 1.94936 1.22171 0.95078 0.84146 0.95402 0.93020 1.22004 0.99644 0.99644 0.96298 1.21438 0.96087 0.99651 0.97921 1.21608 0.96051 1.01285 0.96098 1.21117 0.95902 0.98697 0.94237 0.90935 1.21677 0.93762 1.00376 0.98563 1.19140 0.93287 0.93232 0.96002 1.21365 0.99121 1.19180 1.15894 0.92833 1.25026 0.98605 0.95717 0.95200 1.69987 1.34064 1.22657 1.26936 0.86584 0.84242 0.77770 0.79689 1.19806 1.21094 1.21090 1.21733 0.93379 1.00564 0.99127 0.89973 0.94554 0.94533 0.91411 0.92709 0.92854 0.91523 0.90893 0.92800 0.93677 0.93741 0.96301 0.96781 0.93198 0.91782 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.37 -5.40 9.00 -35.23 -0.32 -5.72 16 3 C 0.09 1.18 2.92 -26.73 -0.08 1.10 16 4 H 0.05 0.58 7.79 -51.93 -0.40 0.18 16 5 C -0.14 -1.72 5.63 -26.73 -0.15 -1.87 16 6 C -0.11 -1.64 5.78 -26.73 -0.15 -1.80 16 7 C -0.11 -1.94 4.96 -26.73 -0.13 -2.07 16 8 C -0.08 -1.47 2.04 -90.62 -0.19 -1.66 16 9 H 0.07 1.45 7.68 -51.93 -0.40 1.05 16 10 C -0.11 -2.29 4.62 -26.73 -0.12 -2.41 16 11 C 0.02 0.54 4.73 -27.88 -0.13 0.41 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 16 Si 0.89 22.20 29.54 -169.99 -5.02 17.17 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 20 C -0.11 -1.65 4.94 -26.73 -0.13 -1.78 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.34 7.87 -51.92 -0.41 -0.07 16 23 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 28 H 0.07 1.42 6.57 -51.93 -0.34 1.07 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 283.59 15.07 4.27 4.27 Total: -1.00 -31.13 283.59 -7.20 -38.33 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -6.47 Total: -4.50 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.41 Total: -22.59 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.74 Total: -26.96 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.32 Total: -5.72 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.13 -7.20 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.411 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds