Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00177 * 2 1 4 4 H 1.09004 * 109.47340 * 329.99812 * 3 2 1 5 5 C 1.53000 * 109.47621 * 89.99763 * 3 2 1 6 6 C 1.52997 * 109.47060 * 59.99980 * 5 3 2 7 7 C 1.52999 * 109.47317 * 59.99960 * 6 5 3 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 5 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 C 1.53002 * 109.46982 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47063 * 64.99850 * 10 8 7 12 12 C 1.50702 * 109.46809 * 180.02562 * 11 10 8 13 13 H 1.08004 * 120.00238 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99531 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47331 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47239 * 119.99739 * 16 14 12 19 19 H 1.48510 * 109.46958 * 239.99640 * 16 14 12 20 20 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 21 21 H 1.08997 * 109.47229 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46849 * 300.00373 * 1 2 3 23 23 H 1.08997 * 109.47063 * 60.00040 * 1 2 3 24 24 H 1.09002 * 109.47398 * 180.02562 * 5 3 2 25 25 H 1.09001 * 109.47194 * 300.00330 * 5 3 2 26 26 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 6 5 3 28 28 H 1.09000 * 109.47486 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.46716 * 60.00091 * 7 6 5 30 30 H 1.09000 * 109.47173 * 184.99606 * 10 8 7 31 31 H 1.09000 * 109.47089 * 304.99682 * 10 8 7 32 32 H 1.08996 * 109.47287 * 299.99590 * 11 10 8 33 33 H 1.09000 * 109.47306 * 59.99965 * 11 10 8 34 34 H 0.97006 * 119.99913 * 180.02562 * 15 14 12 35 35 H 1.08993 * 109.47194 * 179.97438 * 20 8 7 36 36 H 1.09002 * 109.46695 * 59.99734 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.1515 0.7975 2.1638 7 6 4.5001 0.7551 1.4426 8 6 4.2927 0.2892 0.0000 9 1 3.8493 -0.7066 0.0001 10 6 5.6413 0.2474 -0.7214 11 6 6.5320 -0.8164 -0.0764 12 6 7.8605 -0.8571 -0.7866 13 1 8.0505 -0.1910 -1.6153 14 6 8.8332 -1.7452 -0.3791 15 7 8.6017 -2.5566 0.6298 16 14 10.4797 -1.7961 -1.2597 17 1 10.4879 -0.7907 -2.3525 18 1 11.5665 -1.4888 -0.2956 19 1 10.6935 -3.1499 -1.8317 20 6 3.3589 1.2631 -0.7213 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.6607 2.7674 1.4424 25 1 1.2569 1.8015 1.9563 26 1 3.2990 1.1291 3.1915 27 1 2.7081 -0.1983 2.1638 28 1 5.1652 0.0609 1.9562 29 1 4.9435 1.7509 1.4425 30 1 5.4842 0.0017 -1.7716 31 1 6.1248 1.2213 -0.6445 32 1 6.6892 -0.5707 0.9738 33 1 6.0485 -1.7903 -0.1533 34 1 9.2861 -3.1813 0.9168 35 1 3.2116 0.9315 -1.7490 36 1 3.8023 2.2589 -0.7213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126717.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = -105.041381 kcal Electronic energy + Delta-G solvation = -14560.843848 eV Core-core repulsion = 12235.683235 eV Total energy + Delta-G solvation = -2325.160613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39606 -37.59338 -35.45733 -33.61443 -31.34788 -30.13017 -27.33425 -26.63317 -23.83331 -23.18189 -21.36534 -20.46901 -18.48407 -17.01145 -16.65023 -16.51306 -16.21267 -15.64300 -15.33038 -14.53879 -14.28770 -14.02129 -13.57925 -13.42584 -13.22323 -12.89896 -12.81486 -12.68838 -12.35662 -12.11867 -11.94206 -11.73848 -11.51017 -11.44962 -11.14313 -10.98651 -10.60734 -10.47299 -10.26848 -8.18725 -6.30153 1.38924 1.39796 1.53346 2.41429 3.00075 3.13669 3.84157 3.86818 3.95794 4.28378 4.34299 4.41022 4.52551 4.59924 4.64707 4.67498 4.75680 4.81524 4.87631 4.97619 5.00192 5.05404 5.12836 5.21650 5.36024 5.39046 5.42339 5.50119 5.55008 5.69550 5.85436 5.90242 6.28399 6.45126 6.88125 7.38925 8.93420 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.056248 B = 0.006024 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.673214 B = 4647.060343 C = 4725.229892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.089 3.911 4 H 0.081 0.919 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.111 4.111 8 C -0.074 4.074 9 H 0.045 0.955 10 C -0.095 4.095 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.058 0.942 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.278 1.278 20 C -0.107 4.107 21 H 0.086 0.914 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.052 0.948 32 H -0.003 1.003 33 H -0.020 1.020 34 H 0.263 0.737 35 H 0.062 0.938 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.269 9.851 -0.113 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.031 3.969 4 H 0.099 0.901 5 C -0.171 4.171 6 C -0.146 4.146 7 C -0.149 4.149 8 C -0.093 4.093 9 H 0.064 0.936 10 C -0.133 4.133 11 C -0.011 4.011 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.185 1.185 18 H -0.202 1.202 19 H -0.204 1.204 20 C -0.144 4.144 21 H 0.104 0.896 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.016 0.984 33 H -0.002 1.002 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.093 9.563 -0.019 17.867 hybrid contribution 0.876 -0.469 -0.161 1.007 sum -14.216 9.093 -0.180 16.877 Atomic orbital electron populations 1.22921 0.80303 1.03214 1.00697 1.87979 1.20754 1.28831 1.95148 1.22218 0.94327 0.84431 0.95877 0.90123 1.21997 1.00014 0.99444 0.95619 1.21376 0.94739 0.99792 0.98738 1.21551 0.97310 1.00640 0.95375 1.20969 0.94542 0.98696 0.95095 0.93635 1.21521 0.94808 0.98631 0.98298 1.19031 0.93674 0.93243 0.95190 1.21800 1.00321 1.19642 1.16357 0.92327 1.26025 1.03052 0.95047 0.95914 1.70128 1.35689 1.23343 1.28475 0.85378 0.78694 0.78200 0.78648 1.18516 1.20186 1.20372 1.21695 0.93918 1.00089 0.98742 0.89568 0.93141 0.93052 0.89742 0.90681 0.91446 0.93194 0.94546 0.91722 0.93799 0.92943 0.98443 1.00194 0.92833 0.91955 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.69 16 2 O -0.41 -11.17 9.00 -148.98 -1.34 -12.51 16 3 C 0.09 2.10 2.92 30.60 0.09 2.19 16 4 H 0.08 1.48 7.79 -2.39 -0.02 1.46 16 5 C -0.13 -2.90 5.63 30.59 0.17 -2.73 16 6 C -0.11 -3.05 5.78 30.59 0.18 -2.87 16 7 C -0.11 -3.86 4.96 30.60 0.15 -3.71 16 8 C -0.07 -2.75 2.04 -10.79 -0.02 -2.77 16 9 H 0.05 1.91 7.68 -2.39 -0.02 1.89 16 10 C -0.10 -4.18 4.62 30.60 0.14 -4.04 16 11 C 0.03 1.44 4.73 29.85 0.14 1.58 16 12 C -0.54 -32.49 9.11 25.60 0.23 -32.25 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 15 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 16 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C -0.11 -3.01 4.94 30.59 0.15 -2.86 16 21 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.05 0.79 7.87 -2.38 -0.02 0.77 16 23 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.55 7.68 -2.39 -0.02 1.54 16 28 H 0.04 1.49 6.57 -2.39 -0.02 1.48 16 29 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.00 -0.16 6.57 -2.39 -0.02 -0.18 16 33 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 34 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -68.62 283.59 4.90 -63.72 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.01 Total: 5.56 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 2.92 Total: -45.51 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.28 Total: -59.02 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.34 Total: -12.51 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -68.62 4.90 -63.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126717.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.322 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds