Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47486 * 2 1 4 4 C 1.53008 * 109.46721 * 119.99814 * 2 1 3 5 5 H 1.09001 * 109.47190 * 183.40928 * 4 2 1 6 6 C 1.50704 * 109.47020 * 303.40840 * 4 2 1 7 7 H 1.08002 * 119.99792 * 84.51656 * 6 4 2 8 8 C 1.37870 * 120.00083 * 264.23683 * 6 4 2 9 9 N 1.31514 * 120.00109 * 165.92427 * 8 6 4 10 10 Si 1.86806 * 120.00098 * 345.93122 * 8 6 4 11 11 H 1.48503 * 109.47024 * 85.95938 * 10 8 6 12 12 H 1.48497 * 109.46888 * 205.95904 * 10 8 6 13 13 H 1.48501 * 109.47021 * 325.95999 * 10 8 6 14 14 N 1.46895 * 109.47059 * 63.41071 * 4 2 1 15 15 C 1.46952 * 111.00481 * 55.82541 * 14 4 2 16 16 C 1.53052 * 109.36847 * 183.18707 * 15 14 4 17 17 N 1.46951 * 109.36391 * 301.59848 * 16 15 14 18 18 C 1.46957 * 110.88163 * 59.31602 * 17 16 15 19 19 C 1.46963 * 110.99977 * 179.62202 * 14 4 2 20 20 H 1.09004 * 109.46955 * 65.38693 * 1 2 3 21 21 H 1.09007 * 109.47480 * 185.38937 * 1 2 3 22 22 H 1.09006 * 109.47417 * 305.39047 * 1 2 3 23 23 H 1.09003 * 109.47342 * 239.99108 * 2 1 3 24 24 H 1.08994 * 109.47478 * 174.22948 * 3 2 1 25 25 H 1.09000 * 109.47184 * 294.23123 * 3 2 1 26 26 H 1.09002 * 109.47106 * 54.22724 * 3 2 1 27 27 H 0.96999 * 120.00156 * 180.02562 * 9 8 6 28 28 H 1.09001 * 109.48862 * 303.15694 * 15 14 4 29 29 H 1.08994 * 109.49124 * 63.21570 * 15 14 4 30 30 H 1.09004 * 109.48628 * 181.62898 * 16 15 14 31 31 H 1.08993 * 109.50441 * 61.57406 * 16 15 14 32 32 H 1.00912 * 111.00063 * 295.45044 * 17 16 15 33 33 H 1.09004 * 109.48724 * 180.70808 * 18 17 16 34 34 H 1.09000 * 109.50517 * 60.66200 * 18 17 16 35 35 H 1.08994 * 109.48850 * 296.78128 * 19 14 4 36 36 H 1.09011 * 109.48672 * 56.84446 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 3.1282 -0.6687 1.2805 6 6 1.4697 -0.0612 2.4783 7 1 0.4890 -0.3397 2.8351 8 6 2.2022 0.8939 3.1506 9 7 1.6177 1.6639 4.0422 10 14 4.0251 1.0945 2.7948 11 1 4.2060 2.0054 1.6360 12 1 4.7016 1.6683 3.9857 13 1 4.6167 -0.2307 2.4799 14 7 1.6186 -2.1279 1.2089 15 6 2.0740 -2.7788 -0.0275 16 6 1.5486 -4.2157 -0.0678 17 7 2.0292 -4.9436 1.1149 18 6 1.5739 -4.2928 2.3513 19 6 2.0993 -2.8559 2.3916 20 1 -0.3633 0.4280 -0.9343 21 1 -0.3634 -1.0232 0.0965 22 1 -0.3634 0.5952 0.8378 23 1 1.8933 -0.5140 -0.8899 24 1 3.1251 1.4441 0.1033 25 1 1.7635 1.9256 -0.9371 26 1 1.5948 1.9852 0.8338 27 1 2.1330 2.3361 4.5149 28 1 1.6950 -2.2287 -0.8888 29 1 3.1636 -2.7891 -0.0530 30 1 1.9092 -4.7095 -0.9702 31 1 0.4587 -4.2048 -0.0700 32 1 3.0344 -5.0316 1.1016 33 1 1.9529 -4.8429 3.2126 34 1 0.4843 -4.2825 2.3772 35 1 3.1892 -2.8671 2.3936 36 1 1.7387 -2.3620 3.2940 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = 2.836163 kcal Electronic energy + Delta-G solvation = -15489.120210 eV Core-core repulsion = 13200.930270 eV Total energy + Delta-G solvation = -2288.189940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82948 -35.89795 -32.25231 -32.13284 -30.38431 -27.25276 -26.20706 -24.46487 -22.99692 -21.82131 -20.03833 -18.42672 -16.84944 -15.87113 -14.75950 -14.37482 -14.25896 -14.06848 -13.59990 -13.34536 -12.91655 -12.69130 -12.30800 -11.74979 -11.47085 -11.33505 -11.02966 -10.74183 -10.68237 -10.62084 -10.46784 -10.32126 -9.83766 -9.76136 -9.64239 -8.92628 -8.47614 -8.06216 -7.29301 -6.13614 -4.07411 3.21480 3.30678 3.32513 4.35935 4.55865 4.75270 5.18064 5.52667 5.61912 5.63524 5.76412 5.79144 5.95215 6.01407 6.07536 6.16774 6.19317 6.32893 6.50330 6.56207 6.60587 6.69315 6.75278 6.98893 7.01059 7.09305 7.27328 7.30254 7.43658 7.61134 7.68035 7.97675 8.09061 8.63447 8.99645 9.52694 10.99055 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.012716 C = 0.010908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.733894 B = 2201.416266 C = 2566.393665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 C -0.143 4.143 4 C 0.184 3.816 5 H 0.001 0.999 6 C -0.492 4.492 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.891 5.891 10 Si 0.860 3.140 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.274 1.274 14 N -0.520 5.520 15 C 0.009 3.991 16 C 0.061 3.939 17 N -0.691 5.691 18 C 0.058 3.942 19 C 0.030 3.970 20 H 0.021 0.979 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.263 0.737 28 H 0.078 0.922 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.331 0.669 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.014 0.986 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -7.244 -6.771 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 C -0.200 4.200 4 C 0.077 3.923 5 H 0.018 0.982 6 C -0.530 4.530 7 H 0.100 0.900 8 C -0.123 4.123 9 N -0.529 5.529 10 Si 0.689 3.311 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.200 1.200 14 N -0.245 5.245 15 C -0.122 4.122 16 C -0.069 4.069 17 N -0.318 5.318 18 C -0.072 4.072 19 C -0.100 4.100 20 H 0.040 0.960 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.032 0.968 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.710 -7.570 -6.628 10.087 hybrid contribution 2.694 1.151 -0.103 2.932 sum 3.404 -6.419 -6.732 9.905 Atomic orbital electron populations 1.21551 0.95165 1.01614 0.99458 1.21209 0.96748 0.95300 0.96841 1.21898 0.99880 0.97364 1.00900 1.19879 0.93003 0.83938 0.95473 0.98189 1.20751 1.04201 1.19541 1.08506 0.90049 1.24932 0.97300 0.95137 0.94953 1.69931 1.35764 1.20293 1.26925 0.87230 0.87632 0.78452 0.77783 1.19440 1.21896 1.19975 1.62221 1.59360 1.03344 0.99543 1.22893 0.96634 0.96617 0.96017 1.22056 1.01144 0.91112 0.92549 1.60852 1.16335 1.51887 1.02769 1.22137 1.01350 0.92295 0.91394 1.22616 0.96094 0.94629 0.96682 0.95971 0.92788 0.91579 0.94548 0.94333 0.94662 0.90741 0.92666 0.90394 0.96649 0.91448 0.90379 0.85259 0.91219 0.90329 0.96821 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.72 37.16 0.32 -2.09 16 2 C -0.08 -1.70 2.34 -90.62 -0.21 -1.91 16 3 C -0.14 -3.00 7.76 37.15 0.29 -2.71 16 4 C 0.18 4.20 1.24 -68.86 -0.09 4.12 16 5 H 0.00 0.01 5.03 -51.93 -0.26 -0.25 16 6 C -0.49 -12.96 5.62 -34.44 -0.19 -13.15 16 7 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 8 C 0.08 2.17 4.54 -17.82 -0.08 2.09 16 9 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 10 Si 0.86 21.16 25.13 -169.99 -4.27 16.89 16 11 H -0.27 -6.38 6.03 56.52 0.34 -6.04 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.27 -6.73 6.61 56.52 0.37 -6.35 16 14 N -0.52 -10.56 3.86 -227.87 -0.88 -11.44 16 15 C 0.01 0.15 5.22 -3.77 -0.02 0.13 16 16 C 0.06 0.90 6.72 -3.77 -0.03 0.88 16 17 N -0.69 -10.22 6.91 -113.64 -0.79 -11.00 16 18 C 0.06 0.92 6.72 -3.77 -0.03 0.90 16 19 C 0.03 0.57 5.39 -3.77 -0.02 0.55 16 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.05 1.07 7.56 -51.92 -0.39 0.68 16 22 H 0.07 1.48 7.33 -51.93 -0.38 1.10 16 23 H 0.04 0.70 6.08 -51.93 -0.32 0.38 16 24 H 0.04 0.82 5.86 -51.93 -0.30 0.51 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.75 6.86 -51.93 -0.36 1.39 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.08 1.31 5.98 -51.93 -0.31 1.00 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.33 4.58 8.89 -39.29 -0.35 4.23 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 2.09 6.99 -51.92 -0.36 1.73 16 LS Contribution 265.95 15.07 4.01 4.01 Total: -1.00 -27.77 265.95 -7.27 -35.04 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.06 Total: 3.01 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -0.05 Total: -11.20 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.89 Total: -47.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.27 Total: 16.89 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.77 -7.27 -35.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.872 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds