Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47486 * 2 1 4 4 C 1.53008 * 109.46721 * 119.99814 * 2 1 3 5 5 H 1.09001 * 109.47190 * 183.40928 * 4 2 1 6 6 C 1.50704 * 109.47020 * 303.40840 * 4 2 1 7 7 H 1.08002 * 119.99792 * 84.51656 * 6 4 2 8 8 C 1.37870 * 120.00083 * 264.23683 * 6 4 2 9 9 N 1.31514 * 120.00109 * 165.92427 * 8 6 4 10 10 Si 1.86806 * 120.00098 * 345.93122 * 8 6 4 11 11 H 1.48503 * 109.47024 * 85.95938 * 10 8 6 12 12 H 1.48497 * 109.46888 * 205.95904 * 10 8 6 13 13 H 1.48501 * 109.47021 * 325.95999 * 10 8 6 14 14 N 1.46895 * 109.47059 * 63.41071 * 4 2 1 15 15 C 1.46952 * 111.00481 * 55.82541 * 14 4 2 16 16 C 1.53052 * 109.36847 * 183.18707 * 15 14 4 17 17 N 1.46951 * 109.36391 * 301.59848 * 16 15 14 18 18 C 1.46957 * 110.88163 * 59.31602 * 17 16 15 19 19 C 1.46963 * 110.99977 * 179.62202 * 14 4 2 20 20 H 1.09004 * 109.46955 * 65.38693 * 1 2 3 21 21 H 1.09007 * 109.47480 * 185.38937 * 1 2 3 22 22 H 1.09006 * 109.47417 * 305.39047 * 1 2 3 23 23 H 1.09003 * 109.47342 * 239.99108 * 2 1 3 24 24 H 1.08994 * 109.47478 * 174.22948 * 3 2 1 25 25 H 1.09000 * 109.47184 * 294.23123 * 3 2 1 26 26 H 1.09002 * 109.47106 * 54.22724 * 3 2 1 27 27 H 0.96999 * 120.00156 * 180.02562 * 9 8 6 28 28 H 1.09001 * 109.48862 * 303.15694 * 15 14 4 29 29 H 1.08994 * 109.49124 * 63.21570 * 15 14 4 30 30 H 1.09004 * 109.48628 * 181.62898 * 16 15 14 31 31 H 1.08993 * 109.50441 * 61.57406 * 16 15 14 32 32 H 1.00912 * 111.00063 * 295.45044 * 17 16 15 33 33 H 1.09004 * 109.48724 * 180.70808 * 18 17 16 34 34 H 1.09000 * 109.50517 * 60.66200 * 18 17 16 35 35 H 1.08994 * 109.48850 * 296.78128 * 19 14 4 36 36 H 1.09011 * 109.48672 * 56.84446 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2494 5 1 3.1282 -0.6687 1.2805 6 6 1.4697 -0.0612 2.4783 7 1 0.4890 -0.3397 2.8351 8 6 2.2022 0.8939 3.1506 9 7 1.6177 1.6639 4.0422 10 14 4.0251 1.0945 2.7948 11 1 4.2060 2.0054 1.6360 12 1 4.7016 1.6683 3.9857 13 1 4.6167 -0.2307 2.4799 14 7 1.6186 -2.1279 1.2089 15 6 2.0740 -2.7788 -0.0275 16 6 1.5486 -4.2157 -0.0678 17 7 2.0292 -4.9436 1.1149 18 6 1.5739 -4.2928 2.3513 19 6 2.0993 -2.8559 2.3916 20 1 -0.3633 0.4280 -0.9343 21 1 -0.3634 -1.0232 0.0965 22 1 -0.3634 0.5952 0.8378 23 1 1.8933 -0.5140 -0.8899 24 1 3.1251 1.4441 0.1033 25 1 1.7635 1.9256 -0.9371 26 1 1.5948 1.9852 0.8338 27 1 2.1330 2.3361 4.5149 28 1 1.6950 -2.2287 -0.8888 29 1 3.1636 -2.7891 -0.0530 30 1 1.9092 -4.7095 -0.9702 31 1 0.4587 -4.2048 -0.0700 32 1 3.0344 -5.0316 1.1016 33 1 1.9529 -4.8429 3.2126 34 1 0.4843 -4.2825 2.3772 35 1 3.1892 -2.8671 2.3936 36 1 1.7387 -2.3620 3.2940 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = -18.034393 kcal Electronic energy + Delta-G solvation = -15490.025225 eV Core-core repulsion = 13200.930270 eV Total energy + Delta-G solvation = -2289.094956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34682 -37.47930 -34.25628 -33.71621 -31.77238 -29.09588 -27.86980 -26.12137 -24.43940 -23.45440 -21.46651 -20.18462 -18.88868 -17.35045 -16.28138 -16.18247 -15.77210 -15.54914 -15.21712 -14.95224 -14.76711 -14.21757 -14.05722 -13.30096 -13.07385 -13.03121 -12.66873 -12.46661 -12.19526 -12.15314 -12.05532 -11.94664 -11.77306 -11.50135 -11.39903 -10.76508 -10.55262 -9.38246 -8.91331 -8.28471 -6.23613 1.24191 1.28314 1.33716 2.29454 2.99806 3.20693 3.44779 4.13901 4.18621 4.25594 4.33286 4.38026 4.39852 4.48477 4.55989 4.72914 4.74712 4.86441 4.96495 5.03749 5.06119 5.12868 5.22249 5.27784 5.31080 5.38821 5.51960 5.69832 5.84442 6.00786 6.12691 6.39570 6.48833 6.71387 6.82593 7.39083 8.88422 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.012716 C = 0.010908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.733894 B = 2201.416266 C = 2566.393665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.140 4.140 4 C 0.186 3.814 5 H -0.013 1.013 6 C -0.476 4.476 7 H 0.038 0.962 8 C 0.032 3.968 9 N -0.939 5.939 10 Si 0.912 3.088 11 H -0.252 1.252 12 H -0.295 1.295 13 H -0.271 1.271 14 N -0.530 5.530 15 C 0.009 3.991 16 C 0.067 3.933 17 N -0.684 5.684 18 C 0.070 3.930 19 C 0.032 3.968 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.030 0.970 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.263 0.737 28 H 0.086 0.914 29 H 0.015 0.985 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.341 0.659 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.006 0.994 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.694 -8.684 -9.173 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.198 4.198 4 C 0.079 3.921 5 H 0.004 0.996 6 C -0.514 4.514 7 H 0.056 0.944 8 C -0.166 4.166 9 N -0.579 5.579 10 Si 0.739 3.261 11 H -0.176 1.176 12 H -0.222 1.222 13 H -0.196 1.196 14 N -0.255 5.255 15 C -0.121 4.121 16 C -0.062 4.062 17 N -0.312 5.312 18 C -0.060 4.060 19 C -0.098 4.098 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.083 0.917 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.033 0.967 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.024 0.976 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.678 -9.034 -9.056 12.901 hybrid contribution 2.320 1.542 0.629 2.856 sum 3.998 -7.492 -8.427 11.963 Atomic orbital electron populations 1.21420 0.94698 1.01103 0.99513 1.21214 0.97089 0.95208 0.96642 1.21852 0.99329 0.97324 1.01259 1.19772 0.91859 0.85696 0.94788 0.99581 1.20788 1.02214 1.18978 1.09465 0.94359 1.25518 1.00900 0.95110 0.95043 1.70058 1.37284 1.21676 1.28916 0.86382 0.83015 0.78680 0.77988 1.17643 1.22238 1.19645 1.62131 1.59713 1.02385 1.01284 1.23010 0.96680 0.98077 0.94288 1.22092 1.00938 0.89550 0.93663 1.60851 1.17113 1.51056 1.02167 1.22018 1.00867 0.90058 0.93030 1.22602 0.95542 0.96564 0.95135 0.92931 0.92858 0.95124 0.91664 0.94667 0.91410 0.94054 0.92787 0.89558 0.96700 0.88267 0.90798 0.84205 0.89262 0.90981 0.97562 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.72 71.98 0.63 -3.63 16 2 C -0.08 -3.27 2.34 -10.80 -0.03 -3.29 16 3 C -0.14 -5.63 7.76 71.98 0.56 -5.07 16 4 C 0.19 8.44 1.24 44.17 0.05 8.49 16 5 H -0.01 -0.64 5.03 -2.39 -0.01 -0.65 16 6 C -0.48 -25.92 5.62 25.60 0.14 -25.77 16 7 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 8 C 0.03 1.83 4.54 84.65 0.38 2.21 16 9 N -0.94 -57.16 13.96 21.44 0.30 -56.86 16 10 Si 0.91 44.05 25.13 68.60 1.72 45.77 16 11 H -0.25 -11.38 6.03 99.48 0.60 -10.78 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.27 -12.84 6.61 99.48 0.66 -12.18 16 14 N -0.53 -21.04 3.86 -874.86 -3.38 -24.42 16 15 C 0.01 0.28 5.22 86.31 0.45 0.73 16 16 C 0.07 1.74 6.72 86.31 0.58 2.32 16 17 N -0.68 -18.06 6.91 -513.45 -3.55 -21.60 16 18 C 0.07 2.13 6.72 86.31 0.58 2.71 16 19 C 0.03 1.22 5.39 86.31 0.46 1.69 16 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 21 H 0.05 2.04 7.56 -2.38 -0.02 2.02 16 22 H 0.03 1.37 7.33 -2.38 -0.02 1.36 16 23 H 0.07 2.26 6.08 -2.39 -0.01 2.24 16 24 H 0.03 1.41 5.86 -2.39 -0.01 1.39 16 25 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.92 6.86 -2.39 -0.02 1.90 16 27 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.09 2.57 5.98 -2.39 -0.01 2.55 16 29 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.34 8.21 8.89 -89.68 -0.80 7.42 16 33 H 0.09 2.35 8.14 -2.38 -0.02 2.34 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.06 2.75 6.99 -2.38 -0.02 2.73 16 Total: -1.00 -61.39 265.95 -0.99 -62.39 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.09 Total: 14.34 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.82 Total: -19.62 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -6.63 Total: -102.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.72 Total: 45.77 kcal Total: -61.39 -0.99 -62.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.351 kcal (2) G-P(sol) polarization free energy of solvation -61.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds