Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47644 * 2 1 4 4 O 1.42911 * 109.47093 * 119.99828 * 2 1 3 5 5 C 1.42903 * 113.99581 * 96.94309 * 4 2 1 6 6 H 1.08993 * 109.47711 * 23.48259 * 5 4 2 7 7 C 1.53008 * 109.46856 * 263.48327 * 5 4 2 8 8 C 1.53001 * 109.46892 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47006 * 59.99937 * 8 7 5 10 10 C 1.53000 * 109.47214 * 300.00229 * 9 8 7 11 11 H 1.09003 * 109.46612 * 299.99676 * 10 9 8 12 12 C 1.50704 * 109.46974 * 180.02562 * 10 9 8 13 13 H 1.07997 * 119.99500 * 239.99862 * 12 10 9 14 14 C 1.37872 * 119.99926 * 59.99840 * 12 10 9 15 15 N 1.31513 * 120.00500 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99680 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47257 * 59.99842 * 16 14 12 18 18 H 1.48508 * 109.47239 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47129 * 299.99431 * 16 14 12 20 20 C 1.52996 * 109.46780 * 143.48493 * 5 4 2 21 21 H 1.09001 * 109.47302 * 184.05942 * 1 2 3 22 22 H 1.09003 * 109.47214 * 304.06100 * 1 2 3 23 23 H 1.08998 * 109.47115 * 64.05241 * 1 2 3 24 24 H 1.09001 * 109.47370 * 239.99612 * 2 1 3 25 25 H 1.08998 * 109.47629 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47297 * 300.00397 * 3 2 1 27 27 H 1.09011 * 109.46911 * 59.99576 * 3 2 1 28 28 H 1.09003 * 109.46908 * 300.00417 * 7 5 4 29 29 H 1.08999 * 109.46741 * 60.00429 * 7 5 4 30 30 H 1.08995 * 109.46781 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47064 * 300.00127 * 8 7 5 32 32 H 1.08997 * 109.46969 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.47053 * 60.00184 * 9 8 7 34 34 H 0.97002 * 120.00446 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.47411 * 299.99801 * 20 5 4 36 36 H 1.09003 * 109.47182 * 60.00011 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.3488 -2.0436 0.9479 6 1 2.5758 -2.1974 -0.1070 7 6 1.1719 -2.9343 1.3513 8 6 1.5388 -4.4011 1.1175 9 6 2.7636 -4.7612 1.9609 10 6 3.9404 -3.8705 1.5576 11 1 4.1677 -4.0245 0.5027 12 6 5.1469 -4.2256 2.3879 13 1 5.6061 -3.4797 3.0196 14 6 5.6643 -5.5027 2.3411 15 7 5.1048 -6.4112 1.5722 16 14 7.1593 -5.9430 3.3709 17 1 6.8495 -5.7339 4.8080 18 1 7.5150 -7.3668 3.1437 19 1 8.3017 -5.0785 2.9799 20 6 3.5736 -2.4041 1.7909 21 1 -0.3634 -1.0251 0.0727 22 1 -0.3634 0.5756 0.8514 23 1 -0.3633 0.4496 -0.9241 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.9449 -2.7806 2.4063 29 1 0.2994 -2.6775 0.7507 30 1 0.7006 -5.0356 1.4053 31 1 1.7662 -4.5551 0.0626 32 1 3.0253 -5.8060 1.7940 33 1 2.5363 -4.6073 3.0158 34 1 5.4686 -7.3098 1.5395 35 1 4.4120 -1.7696 1.5036 36 1 3.3466 -2.2504 2.8459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = -82.697883 kcal Electronic energy + Delta-G solvation = -14788.250098 eV Core-core repulsion = 12464.058372 eV Total energy + Delta-G solvation = -2324.191726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.73698 -36.33085 -32.91965 -32.05249 -29.82657 -28.28079 -27.08536 -24.75541 -21.48240 -21.18903 -20.86347 -18.67556 -16.77188 -15.76044 -15.06842 -14.55184 -14.38016 -13.72119 -13.26445 -12.92523 -12.82561 -12.27392 -12.21240 -12.06719 -11.93224 -11.53906 -11.28007 -10.90138 -10.68494 -10.56969 -10.52207 -10.06930 -9.98341 -9.82845 -9.50638 -9.09760 -9.03720 -8.50887 -8.25624 -5.95152 -4.01173 3.34599 3.38799 3.41927 4.06392 4.47686 5.04694 5.18126 5.33749 5.34856 5.48986 5.56864 5.63726 5.75685 5.86846 5.89469 5.95605 6.03811 6.24167 6.30279 6.36612 6.46668 6.53585 6.61439 6.76485 6.84557 6.88388 7.18024 7.29003 7.54814 7.78130 7.80855 8.04510 8.19528 8.50196 9.02431 9.63184 11.10567 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.049522 B = 0.007341 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.267798 B = 3813.228905 C = 4211.746389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 C -0.151 4.151 4 O -0.381 6.381 5 C 0.091 3.909 6 H 0.053 0.947 7 C -0.130 4.130 8 C -0.118 4.118 9 C -0.113 4.113 10 C 0.053 3.947 11 H 0.024 0.976 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.103 4.103 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 9.007 -3.514 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 C -0.208 4.208 4 O -0.300 6.300 5 C 0.034 3.966 6 H 0.071 0.929 7 C -0.168 4.168 8 C -0.155 4.155 9 C -0.151 4.151 10 C 0.034 3.966 11 H 0.042 0.958 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.141 4.141 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.616 8.902 -3.386 12.195 hybrid contribution 0.686 -0.430 0.298 0.863 sum -6.931 8.471 -3.087 11.372 Atomic orbital electron populations 1.22356 0.96481 1.02503 1.01654 1.22108 0.93378 0.93618 0.88863 1.21905 1.01815 0.95265 1.01824 1.87936 1.84558 1.24460 1.33085 1.22446 0.95434 0.79659 0.99103 0.92923 1.22037 0.97072 0.96280 1.01427 1.21605 0.99318 0.93913 1.00693 1.21654 0.92713 1.04181 0.96506 1.18609 0.93277 0.87708 0.97000 0.95763 1.21165 1.12003 0.96082 1.25751 0.92732 1.24955 0.97019 0.96517 0.95495 1.69868 1.40553 1.03644 1.39002 0.86681 0.83349 0.77245 0.80853 1.20309 1.21346 1.20329 1.21771 0.93845 0.99724 0.98763 0.92134 0.92189 0.92388 0.92465 0.92085 0.91933 0.92097 0.91966 0.93474 0.93624 0.93055 0.88982 0.94667 0.93029 0.93123 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 9.56 37.16 0.36 -1.73 16 2 C 0.08 1.10 3.39 -26.74 -0.09 1.01 16 3 C -0.15 -1.79 9.56 37.15 0.36 -1.43 16 4 O -0.38 -6.76 9.62 -35.23 -0.34 -7.09 16 5 C 0.09 1.71 2.65 -26.73 -0.07 1.64 16 6 H 0.05 0.98 7.21 -51.93 -0.37 0.61 16 7 C -0.13 -2.35 5.57 -26.73 -0.15 -2.50 16 8 C -0.12 -2.31 5.92 -26.73 -0.16 -2.46 16 9 C -0.11 -2.68 4.98 -26.73 -0.13 -2.81 16 10 C 0.05 1.32 2.10 -91.80 -0.19 1.13 16 11 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 12 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 15 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.10 -2.27 4.79 -26.76 -0.13 -2.40 16 21 H 0.06 0.77 6.27 -51.93 -0.33 0.44 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.79 7.20 -51.93 -0.37 0.41 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.75 6.28 -51.93 -0.33 0.42 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -28.31 280.98 -7.43 -35.74 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -6.33 Total: -1.94 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -0.60 Total: -22.48 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.63 Total: -24.90 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.34 Total: -7.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.31 -7.43 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.959 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds