Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47644 * 2 1 4 4 O 1.42911 * 109.47093 * 119.99828 * 2 1 3 5 5 C 1.42903 * 113.99581 * 96.94309 * 4 2 1 6 6 H 1.08993 * 109.47711 * 23.48259 * 5 4 2 7 7 C 1.53008 * 109.46856 * 263.48327 * 5 4 2 8 8 C 1.53001 * 109.46892 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47006 * 59.99937 * 8 7 5 10 10 C 1.53000 * 109.47214 * 300.00229 * 9 8 7 11 11 H 1.09003 * 109.46612 * 299.99676 * 10 9 8 12 12 C 1.50704 * 109.46974 * 180.02562 * 10 9 8 13 13 H 1.07997 * 119.99500 * 239.99862 * 12 10 9 14 14 C 1.37872 * 119.99926 * 59.99840 * 12 10 9 15 15 N 1.31513 * 120.00500 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99680 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47257 * 59.99842 * 16 14 12 18 18 H 1.48508 * 109.47239 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47129 * 299.99431 * 16 14 12 20 20 C 1.52996 * 109.46780 * 143.48493 * 5 4 2 21 21 H 1.09001 * 109.47302 * 184.05942 * 1 2 3 22 22 H 1.09003 * 109.47214 * 304.06100 * 1 2 3 23 23 H 1.08998 * 109.47115 * 64.05241 * 1 2 3 24 24 H 1.09001 * 109.47370 * 239.99612 * 2 1 3 25 25 H 1.08998 * 109.47629 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47297 * 300.00397 * 3 2 1 27 27 H 1.09011 * 109.46911 * 59.99576 * 3 2 1 28 28 H 1.09003 * 109.46908 * 300.00417 * 7 5 4 29 29 H 1.08999 * 109.46741 * 60.00429 * 7 5 4 30 30 H 1.08995 * 109.46781 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47064 * 300.00127 * 8 7 5 32 32 H 1.08997 * 109.46969 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.47053 * 60.00184 * 9 8 7 34 34 H 0.97002 * 120.00446 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.47411 * 299.99801 * 20 5 4 36 36 H 1.09003 * 109.47182 * 60.00011 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1669 5 6 2.3488 -2.0436 0.9479 6 1 2.5758 -2.1974 -0.1070 7 6 1.1719 -2.9343 1.3513 8 6 1.5388 -4.4011 1.1175 9 6 2.7636 -4.7612 1.9609 10 6 3.9404 -3.8705 1.5576 11 1 4.1677 -4.0245 0.5027 12 6 5.1469 -4.2256 2.3879 13 1 5.6061 -3.4797 3.0196 14 6 5.6643 -5.5027 2.3411 15 7 5.1048 -6.4112 1.5722 16 14 7.1593 -5.9430 3.3709 17 1 6.8495 -5.7339 4.8080 18 1 7.5150 -7.3668 3.1437 19 1 8.3017 -5.0785 2.9799 20 6 3.5736 -2.4041 1.7909 21 1 -0.3634 -1.0251 0.0727 22 1 -0.3634 0.5756 0.8514 23 1 -0.3633 0.4496 -0.9241 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 0.9449 -2.7806 2.4063 29 1 0.2994 -2.6775 0.7507 30 1 0.7006 -5.0356 1.4053 31 1 1.7662 -4.5551 0.0626 32 1 3.0253 -5.8060 1.7940 33 1 2.5363 -4.6073 3.0158 34 1 5.4686 -7.3098 1.5395 35 1 4.4120 -1.7696 1.5036 36 1 3.3466 -2.2504 2.8459 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142488.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = -97.972385 kcal Electronic energy + Delta-G solvation = -14788.912450 eV Core-core repulsion = 12464.058372 eV Total energy + Delta-G solvation = -2324.854078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20539 -37.89618 -34.77023 -33.38822 -31.66346 -29.92474 -28.04844 -26.77397 -23.09491 -22.77267 -22.18735 -20.43270 -18.59937 -17.36723 -16.57073 -16.36796 -15.68555 -15.24203 -14.81330 -14.61382 -14.27845 -13.88264 -13.53945 -13.37744 -13.03138 -12.99214 -12.82360 -12.68806 -12.54585 -12.14314 -11.80803 -11.71531 -11.70337 -11.53779 -11.30584 -10.86741 -10.80192 -10.40109 -10.15144 -8.08164 -6.22276 1.41541 1.42826 1.50545 2.42864 2.80016 3.18047 3.93810 4.03331 4.06676 4.20924 4.30471 4.34104 4.45397 4.66631 4.70062 4.79022 4.80048 4.88865 4.93461 4.96387 4.98340 5.08959 5.14798 5.25220 5.30839 5.37992 5.43275 5.46673 5.61179 5.68767 6.00303 6.16393 6.39499 6.51397 6.88511 7.45438 8.95810 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.049522 B = 0.007341 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.267798 B = 3813.228905 C = 4211.746389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.065 3.935 3 C -0.148 4.148 4 O -0.396 6.396 5 C 0.100 3.900 6 H 0.055 0.945 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.107 4.107 10 C 0.051 3.949 11 H -0.003 1.003 12 C -0.539 4.539 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.915 5.915 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.272 1.272 20 C -0.096 4.096 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.042 0.958 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 9.948 -3.828 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 C -0.205 4.205 4 O -0.316 6.316 5 C 0.042 3.958 6 H 0.073 0.927 7 C -0.160 4.160 8 C -0.148 4.148 9 C -0.145 4.145 10 C 0.032 3.968 11 H 0.015 0.985 12 C -0.577 4.577 13 H 0.066 0.934 14 C -0.184 4.184 15 N -0.555 5.555 16 Si 0.778 3.222 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.198 1.198 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.594 9.858 -3.703 13.592 hybrid contribution 0.997 -0.680 0.366 1.261 sum -7.597 9.178 -3.338 12.373 Atomic orbital electron populations 1.22309 0.94644 1.02462 1.03079 1.22460 0.94918 0.94278 0.87566 1.21913 1.01230 0.94143 1.03226 1.87904 1.84946 1.23579 1.35185 1.22173 0.94361 0.80944 0.98282 0.92699 1.21956 0.97631 0.94585 1.01789 1.21504 0.97919 0.95646 0.99717 1.21475 0.94227 1.02026 0.96757 1.18553 0.93292 0.90106 0.94824 0.98471 1.21540 1.13378 0.96408 1.26329 0.93358 1.25709 0.99746 0.96396 0.96577 1.69999 1.41669 1.03841 1.39941 0.85695 0.79971 0.77151 0.79347 1.19774 1.20676 1.19754 1.21588 0.95435 0.97511 0.98865 0.92677 0.92105 0.89851 0.92265 0.93070 0.89135 0.92087 0.92305 0.90463 0.91499 0.93042 0.92003 0.95568 0.92959 0.93952 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 9.56 71.98 0.69 -2.82 16 2 C 0.07 1.67 3.39 30.59 0.10 1.78 16 3 C -0.15 -3.17 9.56 71.98 0.69 -2.48 16 4 O -0.40 -13.48 9.62 -148.98 -1.43 -14.91 16 5 C 0.10 3.68 2.65 30.60 0.08 3.76 16 6 H 0.05 1.99 7.21 -2.39 -0.02 1.98 16 7 C -0.12 -4.16 5.57 30.60 0.17 -3.99 16 8 C -0.11 -4.20 5.92 30.60 0.18 -4.02 16 9 C -0.11 -5.16 4.98 30.60 0.15 -5.00 16 10 C 0.05 2.62 2.10 -11.56 -0.02 2.60 16 11 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 12 C -0.54 -30.68 8.56 25.60 0.22 -30.46 16 13 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 14 C 0.01 0.81 5.30 84.65 0.45 1.26 16 15 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 16 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 C -0.10 -4.29 4.79 30.58 0.15 -4.14 16 21 H 0.05 1.21 6.27 -2.39 -0.01 1.19 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.50 7.20 -2.39 -0.02 1.48 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.21 6.28 -2.39 -0.01 2.19 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -60.99 280.98 4.71 -56.29 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.02 Total: 8.89 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 2.86 Total: -43.52 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.24 Total: -53.11 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.43 Total: -14.91 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -60.99 4.71 -56.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142488.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.685 kcal (2) G-P(sol) polarization free energy of solvation -60.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds