Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47002 * 2 1 4 4 O 1.42899 * 109.47584 * 119.99828 * 2 1 3 5 5 C 1.42906 * 113.99436 * 88.57153 * 4 2 1 6 6 H 1.09003 * 109.47284 * 328.58241 * 5 4 2 7 7 C 1.52994 * 109.47085 * 88.58922 * 5 4 2 8 8 C 1.52997 * 109.47469 * 59.99632 * 7 5 4 9 9 C 1.53003 * 109.47161 * 59.99971 * 8 7 5 10 10 C 1.53004 * 109.47031 * 300.00411 * 9 8 7 11 11 H 1.09001 * 109.46670 * 299.99996 * 10 9 8 12 12 C 1.50699 * 109.47045 * 180.02562 * 10 9 8 13 13 H 1.07998 * 119.99695 * 239.99440 * 12 10 9 14 14 C 1.37873 * 120.00447 * 59.99501 * 12 10 9 15 15 N 1.31521 * 119.99672 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00493 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47081 * 89.99643 * 16 14 12 18 18 H 1.48493 * 109.47604 * 210.00160 * 16 14 12 19 19 H 1.48507 * 109.46732 * 330.00368 * 16 14 12 20 20 C 1.52993 * 109.47148 * 59.99680 * 10 9 8 21 21 H 1.09003 * 109.46633 * 299.99465 * 1 2 3 22 22 H 1.08996 * 109.47465 * 59.99717 * 1 2 3 23 23 H 1.09000 * 109.47070 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46633 * 240.00535 * 2 1 3 25 25 H 1.08999 * 109.47157 * 184.36476 * 3 2 1 26 26 H 1.09006 * 109.46908 * 304.36157 * 3 2 1 27 27 H 1.08995 * 109.46917 * 64.36268 * 3 2 1 28 28 H 1.08998 * 109.47251 * 180.02562 * 7 5 4 29 29 H 1.09009 * 109.47069 * 299.99593 * 7 5 4 30 30 H 1.08996 * 109.47186 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.46781 * 300.00202 * 8 7 5 32 32 H 1.08997 * 109.46984 * 59.99677 * 9 8 7 33 33 H 1.08999 * 109.47355 * 180.02562 * 9 8 7 34 34 H 0.96998 * 120.00098 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.47208 * 180.02562 * 20 10 9 36 36 H 1.08997 * 109.47516 * 60.00337 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1695 -2.0833 0.9981 6 1 1.4306 -2.4520 0.2866 7 6 3.5756 -2.3744 0.4701 8 6 4.6128 -1.8569 1.4687 9 6 4.4184 -2.5574 2.8150 10 6 3.0122 -2.2662 3.3431 11 1 2.8878 -1.1910 3.4716 12 6 2.8210 -2.9557 4.6694 13 1 2.0379 -3.6899 4.7883 14 6 3.6455 -2.6492 5.7310 15 7 4.5987 -1.7546 5.5863 16 14 3.4080 -3.5032 7.3752 17 1 4.2306 -4.7390 7.4145 18 1 3.8286 -2.5936 8.4709 19 1 1.9759 -3.8563 7.5472 20 6 1.9751 -2.7838 2.3444 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 3.1272 1.4436 -0.0782 26 1 1.6142 1.9785 -0.8484 27 1 1.7419 1.9333 0.9265 28 1 3.6999 -3.4496 0.3410 29 1 3.7141 -1.8753 -0.4891 30 1 5.6145 -2.0639 1.0923 31 1 4.4883 -0.7816 1.5973 32 1 4.5427 -3.6326 2.6864 33 1 5.1570 -2.1884 3.5266 34 1 5.1791 -1.5392 6.3330 35 1 0.9733 -2.5759 2.7204 36 1 2.0994 -3.8590 2.2157 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142489.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = -96.253517 kcal Electronic energy + Delta-G solvation = -15054.965903 eV Core-core repulsion = 12730.186361 eV Total energy + Delta-G solvation = -2324.779542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25534 -37.58545 -34.72633 -33.11835 -31.59313 -30.16785 -28.02943 -26.78539 -23.07420 -22.82327 -22.00427 -20.20929 -18.43440 -17.28556 -16.61014 -16.18878 -15.94187 -15.20365 -14.70793 -14.51524 -14.11735 -13.82866 -13.53373 -13.11934 -13.01676 -12.87513 -12.81426 -12.67268 -12.50967 -12.29379 -12.02903 -11.77571 -11.61284 -11.56449 -11.11439 -10.74630 -10.60715 -10.26541 -10.06755 -8.03257 -6.18116 1.40547 1.41122 1.51560 2.45083 2.95512 3.21987 4.00133 4.04946 4.14298 4.22260 4.26378 4.37784 4.56631 4.71161 4.78093 4.79845 4.86637 4.91799 4.95416 5.00429 5.01869 5.13056 5.18389 5.27905 5.33902 5.39408 5.48373 5.55801 5.66616 5.76492 6.15002 6.26143 6.45730 6.65610 6.97146 7.49312 9.00303 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.040592 B = 0.008339 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.622999 B = 3356.843407 C = 3506.540811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 C -0.145 4.145 4 O -0.393 6.393 5 C 0.096 3.904 6 H 0.071 0.929 7 C -0.129 4.129 8 C -0.105 4.105 9 C -0.103 4.103 10 C 0.055 3.945 11 H -0.009 1.009 12 C -0.537 4.537 13 H 0.050 0.950 14 C 0.009 3.991 15 N -0.917 5.917 16 Si 0.953 3.047 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.100 4.100 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.258 0.742 35 H 0.041 0.959 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 1.592 -12.882 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 C -0.202 4.202 4 O -0.313 6.313 5 C 0.038 3.962 6 H 0.089 0.911 7 C -0.166 4.166 8 C -0.143 4.143 9 C -0.141 4.141 10 C 0.037 3.963 11 H 0.009 0.991 12 C -0.575 4.575 13 H 0.068 0.932 14 C -0.189 4.189 15 N -0.557 5.557 16 Si 0.778 3.222 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.138 4.138 21 H 0.067 0.933 22 H 0.105 0.895 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.570 1.776 -12.611 13.531 hybrid contribution 0.053 -0.389 1.139 1.205 sum -4.516 1.387 -11.472 12.407 Atomic orbital electron populations 1.22281 0.95521 1.02196 1.02688 1.22327 0.94160 0.94205 0.88417 1.21842 1.01319 0.94455 1.02606 1.88107 1.86472 1.20176 1.36540 1.22129 0.96060 0.81256 0.96732 0.91071 1.21969 0.95003 1.01519 0.98143 1.21371 0.97853 0.99367 0.95664 1.21414 1.00350 0.97052 0.95252 1.18435 0.91715 0.94245 0.91924 0.99113 1.21705 1.15398 1.23027 0.97388 0.93187 1.25772 0.95114 0.95852 1.02155 1.70061 1.19869 1.33733 1.32059 0.85644 0.78515 0.78441 0.79575 1.19924 1.21005 1.19390 1.21616 0.98938 0.98661 0.94577 0.93310 0.89502 0.92823 0.91224 0.92901 0.88822 0.93430 0.90620 0.90803 0.92631 0.94110 0.95413 0.92947 0.93266 0.94056 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 9.48 71.98 0.68 -3.30 16 2 C 0.07 1.80 3.12 30.60 0.10 1.90 16 3 C -0.15 -3.57 9.56 71.98 0.69 -2.88 16 4 O -0.39 -14.76 8.29 -148.98 -1.24 -15.99 16 5 C 0.10 3.37 2.70 30.59 0.08 3.45 16 6 H 0.07 2.08 7.49 -2.39 -0.02 2.06 16 7 C -0.13 -4.23 5.58 30.59 0.17 -4.06 16 8 C -0.10 -4.25 5.78 30.59 0.18 -4.07 16 9 C -0.10 -5.12 4.98 30.60 0.15 -4.97 16 10 C 0.06 2.94 1.95 -11.54 -0.02 2.92 16 11 H -0.01 -0.57 7.68 -2.39 -0.02 -0.59 16 12 C -0.54 -31.19 8.56 25.60 0.22 -30.97 16 13 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 14 C 0.01 0.53 5.30 84.65 0.45 0.98 16 15 N -0.92 -55.70 11.32 21.45 0.24 -55.46 16 16 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 C -0.10 -4.34 4.88 30.59 0.15 -4.19 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.26 7.81 -2.39 -0.02 1.24 16 24 H 0.07 1.64 7.49 -2.39 -0.02 1.62 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.02 7.81 -2.38 -0.02 2.01 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.78 7.68 -2.39 -0.02 1.76 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 2.99 6.07 -2.39 -0.01 2.97 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -65.30 281.90 4.89 -60.41 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.01 Total: 8.87 kcal Atomic # 6 Polarization: -48.03 SS G_CDS: 2.84 Total: -45.18 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.24 Total: -55.46 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.24 Total: -15.99 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -65.30 4.89 -60.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142489.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.840 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds