Wall clock time and date at job start Mon Mar 30 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47412 * 2 1 4 4 C 1.53003 * 109.47153 * 120.00462 * 2 1 3 5 5 C 1.52997 * 109.47316 * 64.99851 * 4 2 1 6 6 H 1.08999 * 109.47184 * 306.39726 * 5 4 2 7 7 C 1.50701 * 109.47059 * 186.39834 * 5 4 2 8 8 H 1.07993 * 120.00177 * 267.43540 * 7 5 4 9 9 C 1.37877 * 119.99680 * 87.43016 * 7 5 4 10 10 N 1.31511 * 120.00141 * 353.76784 * 9 7 5 11 11 Si 1.86801 * 119.99761 * 173.49074 * 9 7 5 12 12 H 1.48496 * 109.47343 * 90.00252 * 11 9 7 13 13 H 1.48504 * 109.47183 * 209.99844 * 11 9 7 14 14 H 1.48495 * 109.47233 * 330.00233 * 11 9 7 15 15 N 1.46901 * 109.47246 * 66.40148 * 5 4 2 16 16 C 1.47485 * 110.99868 * 275.97333 * 15 5 4 17 17 C 1.53513 * 87.93044 * 221.29549 * 16 15 5 18 18 N 1.46901 * 114.16795 * 272.37652 * 17 16 15 19 19 C 1.47476 * 110.99869 * 180.02562 * 15 5 4 20 20 H 1.09002 * 109.47023 * 59.99939 * 1 2 3 21 21 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47389 * 299.99875 * 1 2 3 23 23 H 1.09002 * 109.47389 * 240.00125 * 2 1 3 24 24 H 1.09002 * 109.47337 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47477 * 300.00382 * 3 2 1 26 26 H 1.09002 * 109.46741 * 59.99728 * 3 2 1 27 27 H 1.08999 * 109.46638 * 304.99550 * 4 2 1 28 28 H 1.09006 * 109.47021 * 185.00431 * 4 2 1 29 29 H 0.96994 * 120.00222 * 1.82791 * 10 9 7 30 30 H 1.09004 * 113.47503 * 336.05913 * 16 15 5 31 31 H 1.08997 * 113.47673 * 106.52409 * 16 15 5 32 32 H 1.08999 * 114.16906 * 139.66934 * 17 16 15 33 33 H 1.00899 * 110.99522 * 273.83658 * 18 17 16 34 34 H 1.00896 * 111.00134 * 37.79519 * 18 17 16 35 35 H 1.09006 * 113.47348 * 253.46359 * 19 15 5 36 36 H 1.08998 * 113.47967 * 23.87732 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1956 1.1879 6 1 0.5597 -2.2707 1.0278 7 6 1.9984 -2.8706 2.4854 8 1 2.9531 -3.3647 2.5883 9 6 1.1117 -2.8571 3.5412 10 7 0.0036 -2.1534 3.4604 11 14 1.4806 -3.8447 5.0833 12 1 2.2457 -3.0037 6.0385 13 1 0.2060 -4.2740 5.7129 14 1 2.2832 -5.0414 4.7245 15 7 2.3422 -2.8518 0.0800 16 6 1.6317 -2.6463 -1.1960 17 6 1.9326 -4.1128 -1.5357 18 7 3.2257 -4.3230 -2.2004 19 6 1.9755 -4.2774 -0.0104 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 3.1264 -0.6444 1.2951 29 1 -0.2027 -1.6651 2.6481 30 1 0.5688 -2.4385 -1.0725 31 1 2.1263 -1.9365 -1.8590 32 1 1.1079 -4.6375 -2.0180 33 1 3.1426 -4.2035 -3.1988 34 1 3.9315 -3.7104 -1.8203 35 1 2.7618 -4.9505 0.3315 36 1 1.0048 -4.5048 0.4302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:47 Heat of formation + Delta-G solvation = -3.466253 kcal Electronic energy + Delta-G solvation = -15247.674059 eV Core-core repulsion = 12959.210825 eV Total energy + Delta-G solvation = -2288.463234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.31641 -37.59685 -35.21997 -33.39781 -30.62787 -28.19631 -27.27322 -26.47074 -26.02061 -22.87750 -20.73050 -20.19048 -18.98435 -17.32857 -17.09013 -15.83284 -15.66520 -15.60402 -15.27424 -14.85924 -14.26161 -14.09875 -13.69167 -13.42802 -13.20026 -13.11960 -12.75810 -12.74203 -12.32665 -12.10637 -11.98200 -11.85144 -11.54710 -11.39639 -11.10070 -10.67112 -10.28605 -9.58715 -9.48550 -8.62089 -6.31427 1.49235 1.56938 1.75177 2.53249 3.13746 3.34570 3.47903 3.82880 3.93781 4.10403 4.11172 4.21765 4.54125 4.55943 4.61423 4.66444 4.73994 4.82983 4.84888 4.89411 4.95882 5.04135 5.07913 5.14872 5.19009 5.29352 5.51033 5.52086 5.77147 6.01155 6.21097 6.23488 6.51207 6.67634 6.70821 7.47308 8.77926 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.013174 C = 0.009179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.639739 B = 2124.825045 C = 3049.592395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.137 4.137 4 C -0.081 4.081 5 C 0.173 3.827 6 H -0.005 1.005 7 C -0.597 4.597 8 H 0.036 0.964 9 C -0.026 4.026 10 N -0.936 5.936 11 Si 1.110 2.890 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.276 1.276 15 N -0.473 5.473 16 C -0.035 4.035 17 C 0.080 3.920 18 N -0.820 5.820 19 C 0.021 3.979 20 H 0.073 0.927 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.354 0.646 34 H 0.349 0.651 35 H 0.063 0.937 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 1.331 -10.711 11.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.195 4.195 4 C -0.120 4.120 5 C 0.065 3.935 6 H 0.012 0.988 7 C -0.635 4.635 8 H 0.055 0.945 9 C -0.225 4.225 10 N -0.573 5.573 11 Si 0.933 3.067 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.201 1.201 15 N -0.196 5.196 16 C -0.166 4.166 17 C -0.034 4.034 18 N -0.350 5.350 19 C -0.109 4.109 20 H 0.091 0.909 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.081 0.919 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.451 0.448 -8.820 9.165 hybrid contribution -0.568 1.314 -1.177 1.853 sum 1.883 1.762 -9.997 10.324 Atomic orbital electron populations 1.21807 0.95846 1.00501 1.01233 1.21371 0.95467 0.96710 0.98584 1.21774 1.00750 0.95289 1.01661 1.21474 0.98534 0.96112 0.95867 1.19836 0.91190 0.92088 0.90423 0.98774 1.22152 1.03974 1.37699 0.99724 0.94528 1.27032 0.93248 0.97079 1.05142 1.70878 1.26798 1.29972 1.29679 0.83007 0.75922 0.75329 0.72438 1.20296 1.20786 1.20091 1.68781 1.44542 1.04206 1.02021 1.24695 0.97999 0.99234 0.94697 1.22627 0.93100 0.93755 0.93889 1.58520 1.05933 1.61547 1.08987 1.23489 0.99085 0.92687 0.95624 0.90857 0.94645 0.94479 0.90178 0.92815 0.91032 0.93887 0.95994 0.94431 0.92829 0.92646 0.89442 0.87706 0.83102 0.83774 0.91882 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.71 71.98 0.63 -4.16 16 2 C -0.10 -3.68 2.43 -10.79 -0.03 -3.70 16 3 C -0.14 -4.11 9.19 71.98 0.66 -3.45 16 4 C -0.08 -3.73 4.23 30.59 0.13 -3.60 16 5 C 0.17 8.53 0.89 44.17 0.04 8.57 16 6 H -0.01 -0.29 4.48 -2.39 -0.01 -0.30 16 7 C -0.60 -33.82 7.67 25.60 0.20 -33.62 16 8 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 9 C -0.03 -1.49 5.45 84.66 0.46 -1.03 16 10 N -0.94 -56.63 13.62 21.45 0.29 -56.34 16 11 Si 1.11 51.50 29.91 68.60 2.05 53.55 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 15 N -0.47 -19.85 5.91 -907.38 -5.36 -25.21 16 16 C -0.03 -1.16 5.17 83.54 0.43 -0.72 16 17 C 0.08 2.40 5.42 45.36 0.25 2.65 16 18 N -0.82 -21.23 9.68 -167.98 -1.63 -22.86 16 19 C 0.02 0.86 6.67 83.53 0.56 1.41 16 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.03 1.36 5.12 -2.39 -0.01 1.35 16 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.08 2.71 4.75 -2.39 -0.01 2.69 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.02 1.12 7.96 -2.39 -0.02 1.10 16 28 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.26 15.82 6.51 -92.71 -0.60 15.22 16 30 H 0.06 1.95 5.99 -2.38 -0.01 1.93 16 31 H 0.09 2.57 6.85 -2.39 -0.02 2.55 16 32 H 0.11 2.76 8.14 -2.39 -0.02 2.75 16 33 H 0.35 6.89 9.08 -89.69 -0.81 6.08 16 34 H 0.35 9.59 8.71 -89.70 -0.78 8.81 16 35 H 0.06 2.66 8.14 -2.38 -0.02 2.65 16 36 H 0.04 1.95 7.89 -2.39 -0.02 1.93 16 Total: -1.00 -63.39 276.57 -1.68 -65.07 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.36 Total: 23.43 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.32 Total: -37.65 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -6.70 Total: -104.41 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.05 Total: 53.55 kcal Total: -63.39 -1.68 -65.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.603 kcal (2) G-P(sol) polarization free energy of solvation -63.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds