Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47430 * 2 1 4 4 H 1.09000 * 109.47198 * 305.00114 * 3 2 1 5 5 C 1.52996 * 109.47240 * 65.00094 * 3 2 1 6 6 C 1.53003 * 109.47345 * 184.99905 * 3 2 1 7 7 C 1.50703 * 109.54346 * 59.99933 * 6 3 2 8 8 H 1.07995 * 120.00460 * 237.39771 * 7 6 3 9 9 C 1.37884 * 119.99856 * 57.39410 * 7 6 3 10 10 N 1.31509 * 119.99822 * 6.13545 * 9 7 6 11 11 Si 1.86800 * 120.00084 * 186.13039 * 9 7 6 12 12 H 1.48505 * 109.46786 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47294 * 120.00189 * 11 9 7 14 14 H 1.48496 * 109.47045 * 240.00483 * 11 9 7 15 15 C 1.53175 * 109.54422 * 299.82674 * 6 3 2 16 16 C 1.53099 * 109.15819 * 183.24193 * 15 6 3 17 17 O 1.42909 * 109.48830 * 57.46904 * 16 15 6 18 18 C 1.42894 * 114.09723 * 298.89022 * 17 16 15 19 19 C 1.53091 * 109.41729 * 61.15599 * 18 17 16 20 20 H 1.08992 * 109.46770 * 300.00173 * 1 2 3 21 21 H 1.09007 * 109.47037 * 59.99642 * 1 2 3 22 22 H 1.08997 * 109.47081 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46995 * 239.99738 * 2 1 3 24 24 H 1.08997 * 109.47013 * 120.00321 * 2 1 3 25 25 H 1.09000 * 109.47009 * 59.99904 * 5 3 2 26 26 H 1.09007 * 109.46862 * 300.00111 * 5 3 2 27 27 H 1.09005 * 109.47255 * 180.02562 * 5 3 2 28 28 H 0.97002 * 119.99948 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.51895 * 303.05211 * 15 6 3 30 30 H 1.08990 * 109.52463 * 63.24162 * 15 6 3 31 31 H 1.09004 * 109.40813 * 297.48866 * 16 15 6 32 32 H 1.08995 * 109.48789 * 177.50173 * 16 15 6 33 33 H 1.09001 * 109.48338 * 301.17424 * 18 17 16 34 34 H 1.09000 * 109.49392 * 181.14820 * 18 17 16 35 35 H 1.09004 * 109.52585 * 182.47970 * 19 18 17 36 36 H 1.09005 * 109.52055 * 62.29956 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 3.9654 0.7707 -1.4130 8 1 4.6259 -0.0835 -1.3928 9 6 3.4886 1.2452 -2.6166 10 7 2.7838 2.3548 -2.6532 11 14 3.8439 0.3118 -4.1953 12 1 4.6514 -0.8954 -3.8854 13 1 2.5639 -0.0970 -4.8274 14 1 4.5995 1.1861 -5.1279 15 6 4.1776 0.6908 1.0589 16 6 5.7040 0.7673 0.9677 17 8 6.1122 2.1367 0.9450 18 6 5.6079 2.8774 -0.1681 19 6 4.0777 2.8876 -0.1215 20 1 -0.3632 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.0700 1.5874 2.1491 26 1 0.5490 2.1252 1.3969 27 1 1.9984 3.1543 1.3071 28 1 2.4486 2.6888 -3.5000 29 1 3.8463 1.1474 1.9916 30 1 3.8614 -0.3518 1.0303 31 1 6.0376 0.2734 0.0551 32 1 6.1452 0.2708 1.8319 33 1 5.9402 2.4111 -1.0956 34 1 5.9798 3.9010 -0.1224 35 1 3.6902 3.4145 -0.9935 36 1 3.7443 3.3899 0.7866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -70.472026 kcal Electronic energy + Delta-G solvation = -15787.130508 eV Core-core repulsion = 13463.468934 eV Total energy + Delta-G solvation = -2323.661573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.84729 -35.86536 -32.63571 -31.11496 -29.88449 -28.13724 -25.86329 -23.69604 -22.60994 -22.02530 -19.51874 -18.01952 -15.73431 -15.09090 -14.91023 -14.65386 -13.89274 -13.59757 -13.47328 -12.84536 -12.53780 -12.31881 -11.73508 -11.62050 -11.13832 -10.97940 -10.88924 -10.70541 -10.48047 -10.38220 -10.09663 -9.79730 -9.66481 -9.52977 -9.09142 -8.83875 -8.71038 -8.23394 -8.04125 -5.96841 -4.04023 3.26478 3.36247 3.39316 4.41317 4.90421 5.27522 5.86172 5.94832 6.03716 6.09565 6.20773 6.26136 6.36475 6.41519 6.43527 6.53396 6.55399 6.62463 6.66341 6.74471 6.91280 6.97735 6.99501 7.07025 7.13277 7.28585 7.49426 7.55707 7.69638 7.81352 7.94399 8.17057 8.33567 8.50975 8.95456 9.58915 11.03265 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.018052 C = 0.012139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.707195 B = 1550.687713 C = 2306.151640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.078 4.078 4 H 0.098 0.902 5 C -0.149 4.149 6 C 0.081 3.919 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.068 3.932 10 N -0.883 5.883 11 Si 0.879 3.121 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.286 1.286 15 C -0.142 4.142 16 C 0.071 3.929 17 O -0.404 6.404 18 C 0.073 3.927 19 C -0.140 4.140 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.258 0.742 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.493 -1.513 4.188 4.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.097 4.097 4 H 0.116 0.884 5 C -0.206 4.206 6 C 0.081 3.919 7 C -0.535 4.535 8 H 0.072 0.928 9 C -0.133 4.133 10 N -0.522 5.522 11 Si 0.708 3.292 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.213 1.213 15 C -0.179 4.179 16 C -0.006 4.006 17 O -0.324 6.324 18 C -0.004 4.004 19 C -0.178 4.178 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.470 -1.318 4.188 4.415 hybrid contribution -0.094 -0.627 -1.149 1.312 sum -0.563 -1.944 3.039 3.652 Atomic orbital electron populations 1.21842 0.98421 0.99534 1.00849 1.21461 0.92953 0.98796 1.01066 1.21112 0.98005 0.94150 0.96392 0.88354 1.22057 0.98851 1.00361 0.99325 1.18082 0.90944 0.91242 0.91646 1.21114 1.28331 1.13642 0.90442 0.92820 1.24855 0.95260 0.94708 0.98438 1.69789 1.36803 1.20109 1.25469 0.86735 0.78006 0.80270 0.84220 1.19937 1.21093 1.21259 1.22296 0.95376 1.00609 0.99665 1.22396 0.95320 0.82936 0.99909 1.87692 1.73646 1.22606 1.48441 1.22477 0.95627 0.93616 0.88634 1.22249 0.94002 1.00383 1.01197 0.93749 0.93322 0.94550 0.91234 0.94263 0.94221 0.94765 0.93543 0.93170 0.93590 0.92533 0.93150 0.91786 0.92791 0.91968 0.88145 0.95398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.67 37.16 0.36 -2.29 16 2 C -0.11 -2.14 4.75 -26.73 -0.13 -2.26 16 3 C -0.08 -1.70 1.52 -90.62 -0.14 -1.84 16 4 H 0.10 2.45 6.12 -51.93 -0.32 2.13 16 5 C -0.15 -2.89 8.25 37.16 0.31 -2.59 16 6 C 0.08 1.84 0.06 -155.48 -0.01 1.83 16 7 C -0.50 -12.35 4.97 -34.44 -0.17 -12.52 16 8 H 0.05 1.37 6.84 -52.49 -0.36 1.01 16 9 C 0.07 1.74 5.13 -17.82 -0.09 1.64 16 10 N -0.88 -22.96 9.39 55.43 0.52 -22.44 16 11 Si 0.88 20.33 29.54 -169.99 -5.02 15.31 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 C -0.14 -2.94 4.16 -26.59 -0.11 -3.05 16 16 C 0.07 1.43 6.61 37.21 0.25 1.68 16 17 O -0.40 -8.78 10.77 -35.23 -0.38 -9.16 16 18 C 0.07 1.58 6.62 37.20 0.25 1.83 16 19 C -0.14 -3.22 4.49 -26.60 -0.12 -3.34 16 20 H 0.04 0.73 6.56 -51.93 -0.34 0.39 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.55 7.05 -51.93 -0.37 1.19 16 24 H 0.04 0.76 6.79 -51.93 -0.35 0.40 16 25 H 0.04 0.73 6.36 -51.93 -0.33 0.40 16 26 H 0.03 0.61 6.57 -51.93 -0.34 0.27 16 27 H 0.05 0.91 6.37 -51.93 -0.33 0.58 16 28 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 29 H 0.05 0.93 6.28 -51.93 -0.33 0.60 16 30 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 31 H 0.05 1.06 6.83 -51.93 -0.35 0.70 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 2.53 6.01 -51.93 -0.31 2.22 16 36 H 0.03 0.62 6.28 -51.93 -0.33 0.29 16 LS Contribution 260.30 15.07 3.92 3.92 Total: -1.00 -25.40 260.30 -6.18 -31.58 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.62 Total: 1.69 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 0.39 Total: -20.90 kcal Atomic # 7 Polarization: -22.96 SS G_CDS: 0.52 Total: -22.44 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.38 Total: -9.16 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.40 -6.18 -31.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.889 kcal (2) G-P(sol) polarization free energy of solvation -25.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds