Wall clock time and date at job start Mon Mar 30 2020 02:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47430 * 2 1 4 4 H 1.09000 * 109.47198 * 305.00114 * 3 2 1 5 5 C 1.52996 * 109.47240 * 65.00094 * 3 2 1 6 6 C 1.53003 * 109.47345 * 184.99905 * 3 2 1 7 7 C 1.50703 * 109.54346 * 59.99933 * 6 3 2 8 8 H 1.07995 * 120.00460 * 237.39771 * 7 6 3 9 9 C 1.37884 * 119.99856 * 57.39410 * 7 6 3 10 10 N 1.31509 * 119.99822 * 6.13545 * 9 7 6 11 11 Si 1.86800 * 120.00084 * 186.13039 * 9 7 6 12 12 H 1.48505 * 109.46786 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47294 * 120.00189 * 11 9 7 14 14 H 1.48496 * 109.47045 * 240.00483 * 11 9 7 15 15 C 1.53175 * 109.54422 * 299.82674 * 6 3 2 16 16 C 1.53099 * 109.15819 * 183.24193 * 15 6 3 17 17 O 1.42909 * 109.48830 * 57.46904 * 16 15 6 18 18 C 1.42894 * 114.09723 * 298.89022 * 17 16 15 19 19 C 1.53091 * 109.41729 * 61.15599 * 18 17 16 20 20 H 1.08992 * 109.46770 * 300.00173 * 1 2 3 21 21 H 1.09007 * 109.47037 * 59.99642 * 1 2 3 22 22 H 1.08997 * 109.47081 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46995 * 239.99738 * 2 1 3 24 24 H 1.08997 * 109.47013 * 120.00321 * 2 1 3 25 25 H 1.09000 * 109.47009 * 59.99904 * 5 3 2 26 26 H 1.09007 * 109.46862 * 300.00111 * 5 3 2 27 27 H 1.09005 * 109.47255 * 180.02562 * 5 3 2 28 28 H 0.97002 * 119.99948 * 179.97438 * 10 9 7 29 29 H 1.09004 * 109.51895 * 303.05211 * 15 6 3 30 30 H 1.08990 * 109.52463 * 63.24162 * 15 6 3 31 31 H 1.09004 * 109.40813 * 297.48866 * 16 15 6 32 32 H 1.08995 * 109.48789 * 177.50173 * 16 15 6 33 33 H 1.09001 * 109.48338 * 301.17424 * 18 17 16 34 34 H 1.09000 * 109.49392 * 181.14820 * 18 17 16 35 35 H 1.09004 * 109.52585 * 182.47970 * 19 18 17 36 36 H 1.09005 * 109.52055 * 62.29956 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 3.9654 0.7707 -1.4130 8 1 4.6259 -0.0835 -1.3928 9 6 3.4886 1.2452 -2.6166 10 7 2.7838 2.3548 -2.6532 11 14 3.8439 0.3118 -4.1953 12 1 4.6514 -0.8954 -3.8854 13 1 2.5639 -0.0970 -4.8274 14 1 4.5995 1.1861 -5.1279 15 6 4.1776 0.6908 1.0589 16 6 5.7040 0.7673 0.9677 17 8 6.1122 2.1367 0.9450 18 6 5.6079 2.8774 -0.1681 19 6 4.0777 2.8876 -0.1215 20 1 -0.3632 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.0700 1.5874 2.1491 26 1 0.5490 2.1252 1.3969 27 1 1.9984 3.1543 1.3071 28 1 2.4486 2.6888 -3.5000 29 1 3.8463 1.1474 1.9916 30 1 3.8614 -0.3518 1.0303 31 1 6.0376 0.2734 0.0551 32 1 6.1452 0.2708 1.8319 33 1 5.9402 2.4111 -1.0956 34 1 5.9798 3.9010 -0.1224 35 1 3.6902 3.4145 -0.9935 36 1 3.7443 3.3899 0.7866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:12 Heat of formation + Delta-G solvation = -83.610249 kcal Electronic energy + Delta-G solvation = -15787.700224 eV Core-core repulsion = 13463.468934 eV Total energy + Delta-G solvation = -2324.231289 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57551 -37.55507 -34.45206 -32.86174 -31.60008 -29.73653 -27.69609 -25.41547 -24.33469 -23.65192 -21.23271 -19.81965 -17.58543 -16.82910 -16.60715 -16.51082 -15.51550 -15.29976 -15.23501 -14.53694 -14.13739 -14.00452 -13.38426 -13.32642 -12.82822 -12.69399 -12.59786 -12.47733 -12.21104 -12.10030 -11.76414 -11.58790 -11.38966 -11.20599 -10.81745 -10.65890 -10.48051 -10.08356 -9.80087 -7.91404 -6.01951 1.38946 1.45661 1.51582 2.49083 3.24307 3.31238 4.26472 4.35930 4.46617 4.53333 4.57861 4.63277 4.72757 4.79651 4.85743 4.86576 4.93296 5.01309 5.03542 5.22730 5.29055 5.31881 5.38168 5.44127 5.48270 5.52506 5.74343 5.76715 5.86678 6.01970 6.16689 6.37320 6.56328 6.62605 7.03426 7.61771 9.06279 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.018052 C = 0.012139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.707195 B = 1550.687713 C = 2306.151640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.077 4.077 4 H 0.064 0.936 5 C -0.141 4.141 6 C 0.073 3.927 7 C -0.497 4.497 8 H 0.042 0.958 9 C 0.033 3.967 10 N -0.898 5.898 11 Si 0.923 3.077 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.289 1.289 15 C -0.137 4.137 16 C 0.068 3.932 17 O -0.407 6.407 18 C 0.077 3.923 19 C -0.136 4.136 20 H 0.059 0.941 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.254 0.746 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -2.131 5.520 5.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C -0.096 4.096 4 H 0.083 0.917 5 C -0.198 4.198 6 C 0.073 3.927 7 C -0.535 4.535 8 H 0.061 0.939 9 C -0.166 4.166 10 N -0.538 5.538 11 Si 0.751 3.249 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.216 1.216 15 C -0.174 4.174 16 C -0.009 4.009 17 O -0.327 6.327 18 C 0.000 4.000 19 C -0.174 4.174 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.567 -1.944 5.522 5.882 hybrid contribution -0.046 -0.445 -1.556 1.619 sum -0.613 -2.389 3.966 4.671 Atomic orbital electron populations 1.21773 0.96409 1.00932 1.00925 1.21377 0.94772 0.97506 1.00260 1.20999 0.97208 0.94972 0.96460 0.91728 1.21951 0.99963 0.99698 0.98167 1.18151 0.91854 0.91108 0.91603 1.21255 1.27577 1.13066 0.91603 0.93930 1.25306 0.95634 0.95321 1.00339 1.69911 1.37568 1.20860 1.25470 0.86058 0.77499 0.79329 0.82019 1.19878 1.21341 1.21565 1.22230 0.95638 1.00618 0.98950 1.22539 0.95191 0.82326 1.00817 1.87694 1.73651 1.23303 1.48012 1.22404 0.94950 0.94599 0.88022 1.22148 0.94694 1.00391 1.00185 0.92187 0.94687 0.92535 0.93987 0.92989 0.92994 0.93195 0.94257 0.93586 0.92641 0.91994 0.94441 0.88482 0.94767 0.90018 0.90725 0.94806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 9.67 71.98 0.70 -4.09 16 2 C -0.10 -3.99 4.75 30.59 0.15 -3.84 16 3 C -0.08 -3.31 1.52 -10.80 -0.02 -3.33 16 4 H 0.06 3.24 6.12 -2.39 -0.01 3.22 16 5 C -0.14 -5.17 8.25 71.98 0.59 -4.58 16 6 C 0.07 3.26 0.06 -52.81 0.00 3.26 16 7 C -0.50 -24.72 4.97 25.60 0.13 -24.60 16 8 H 0.04 2.18 6.84 -2.91 -0.02 2.16 16 9 C 0.03 1.69 5.13 84.66 0.43 2.12 16 10 N -0.90 -47.53 9.39 21.45 0.20 -47.33 16 11 Si 0.92 42.09 29.54 68.60 2.03 44.12 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 14 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 15 C -0.14 -5.38 4.16 30.69 0.13 -5.26 16 16 C 0.07 2.58 6.61 72.02 0.48 3.06 16 17 O -0.41 -16.90 10.77 -148.98 -1.60 -18.50 16 18 C 0.08 3.28 6.62 72.01 0.48 3.75 16 19 C -0.14 -6.18 4.49 30.68 0.14 -6.04 16 20 H 0.06 1.81 6.56 -2.39 -0.02 1.79 16 21 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.04 1.85 7.05 -2.38 -0.02 1.84 16 24 H 0.05 1.88 6.79 -2.39 -0.02 1.86 16 25 H 0.05 1.77 6.36 -2.39 -0.02 1.75 16 26 H 0.05 1.65 6.57 -2.38 -0.02 1.64 16 27 H 0.04 1.48 6.37 -2.38 -0.02 1.46 16 28 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 29 H 0.06 2.07 6.28 -2.39 -0.01 2.06 16 30 H 0.06 2.36 6.74 -2.39 -0.02 2.34 16 31 H 0.04 1.53 6.83 -2.39 -0.02 1.51 16 32 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.03 1.59 7.38 -2.39 -0.02 1.57 16 34 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.07 3.80 6.01 -2.39 -0.01 3.79 16 36 H 0.03 1.46 6.28 -2.38 -0.01 1.45 16 Total: -1.00 -52.88 260.30 4.87 -48.01 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.05 Total: 13.24 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.19 Total: -39.54 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.20 Total: -47.33 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.60 Total: -18.50 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -52.88 4.87 -48.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.597 kcal (2) G-P(sol) polarization free energy of solvation -52.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds