Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47036 * 2 1 4 4 C 1.52999 * 109.47297 * 119.99949 * 2 1 3 5 5 O 1.42901 * 109.46999 * 65.00133 * 4 2 1 6 6 C 1.42901 * 113.99832 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.43099 * 27.46061 * 6 5 4 8 8 C 1.54367 * 110.57624 * 264.82606 * 6 5 4 9 9 C 1.53876 * 106.54765 * 217.62985 * 8 6 5 10 10 C 1.54263 * 106.63651 * 0.04097 * 9 8 6 11 11 H 1.09005 * 110.48584 * 264.90184 * 10 9 8 12 12 C 1.50703 * 110.48612 * 142.39846 * 10 9 8 13 13 H 1.07998 * 119.99690 * 241.44817 * 12 10 9 14 14 C 1.37873 * 120.00157 * 61.44898 * 12 10 9 15 15 N 1.31515 * 120.00069 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00048 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47158 * 89.99935 * 16 14 12 18 18 H 1.48499 * 109.47228 * 210.00189 * 16 14 12 19 19 H 1.48506 * 109.47095 * 329.99898 * 16 14 12 20 20 C 1.54884 * 104.19983 * 23.58277 * 10 9 8 21 21 H 1.08999 * 109.47399 * 59.99778 * 1 2 3 22 22 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47076 * 299.99811 * 1 2 3 24 24 H 1.09002 * 109.47076 * 240.00189 * 2 1 3 25 25 H 1.08996 * 109.46716 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46629 * 300.00059 * 3 2 1 27 27 H 1.08993 * 109.46852 * 60.00325 * 3 2 1 28 28 H 1.08999 * 109.47488 * 304.99973 * 4 2 1 29 29 H 1.09002 * 109.46696 * 184.99740 * 4 2 1 30 30 H 1.09002 * 110.04920 * 98.36582 * 8 6 5 31 31 H 1.09003 * 110.07124 * 336.90216 * 8 6 5 32 32 H 1.09002 * 110.03428 * 240.72988 * 9 8 6 33 33 H 1.08995 * 110.02995 * 119.34836 * 9 8 6 34 34 H 0.97003 * 120.00314 * 179.97438 * 15 14 12 35 35 H 1.09007 * 110.75453 * 80.37494 * 20 10 9 36 36 H 1.08998 * 110.75749 * 203.55832 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1920 6 6 2.0925 -2.8663 2.3175 7 1 2.1887 -2.2306 3.1976 8 6 3.4303 -3.5734 2.0121 9 6 3.3565 -4.9579 2.6795 10 6 1.9776 -5.0445 3.3657 11 1 2.0553 -4.7607 4.4153 12 6 1.4110 -6.4351 3.2374 13 1 0.4801 -6.5925 2.7131 14 6 2.0811 -7.5062 3.7893 15 7 3.2145 -7.3144 4.4282 16 14 1.3791 -9.2299 3.6296 17 1 1.8976 -9.8627 2.3903 18 1 1.7842 -10.0404 4.8061 19 1 -0.1028 -9.1569 3.5655 20 6 1.1036 -4.0264 2.5921 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 1.6055 -0.2618 2.1370 29 1 3.1264 -0.6443 1.2950 30 1 4.2591 -3.0014 2.4293 31 1 3.5574 -3.6844 0.9352 32 1 4.1494 -5.0579 3.4207 33 1 3.4487 -5.7407 1.9266 34 1 3.6858 -8.0679 4.8169 35 1 0.7444 -4.4573 1.6575 36 1 0.2687 -3.6889 3.2062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -83.334751 kcal Electronic energy + Delta-G solvation = -14374.635706 eV Core-core repulsion = 12050.416364 eV Total energy + Delta-G solvation = -2324.219343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.42996 -36.31358 -34.31449 -32.10713 -28.10313 -27.30273 -27.12691 -25.40172 -23.68294 -20.33639 -19.53352 -19.04182 -16.73677 -15.79231 -15.50971 -14.83912 -14.43592 -14.12091 -13.62763 -13.12516 -12.70531 -12.32494 -12.21977 -12.17941 -11.58093 -11.17788 -11.13478 -11.01198 -10.89658 -10.63808 -10.49308 -10.44666 -10.13341 -9.79806 -9.47472 -9.24300 -8.79315 -8.68124 -8.34228 -5.96963 -3.99448 3.33913 3.40337 3.43950 4.08627 4.48579 4.88452 4.94964 5.20325 5.34930 5.50037 5.53634 5.56890 5.61380 5.69518 5.81881 5.84032 5.91743 5.96907 6.05074 6.21125 6.33064 6.38219 6.60613 6.66242 6.82212 6.85530 7.03188 7.25766 7.38099 7.75252 7.81288 7.97109 8.05996 8.50445 9.03186 9.64348 11.12820 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.067458 B = 0.005864 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.974274 B = 4773.735270 C = 5026.071569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.066 3.934 5 O -0.381 6.381 6 C 0.082 3.918 7 H 0.054 0.946 8 C -0.146 4.146 9 C -0.093 4.093 10 C 0.049 3.951 11 H 0.028 0.972 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.109 4.109 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.259 0.741 35 H 0.066 0.934 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 13.332 -6.086 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.011 4.011 5 O -0.301 6.301 6 C 0.024 3.976 7 H 0.072 0.928 8 C -0.184 4.184 9 C -0.131 4.131 10 C 0.030 3.970 11 H 0.046 0.954 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.147 4.147 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.368 13.150 -6.131 14.574 hybrid contribution 0.000 -0.854 0.194 0.876 sum -1.367 12.297 -5.937 13.723 Atomic orbital electron populations 1.21771 0.94730 1.02633 1.00909 1.21097 0.96693 0.95323 0.98356 1.21785 1.00974 0.95614 1.01870 1.22500 0.97999 0.83430 0.97194 1.87913 1.78354 1.19078 1.44709 1.23233 0.95605 0.92114 0.86608 0.92799 1.22750 0.95870 0.99078 1.00722 1.22003 1.00386 0.91967 0.98784 1.19412 0.90425 0.93002 0.94141 0.95358 1.21151 1.07440 0.91432 1.34992 0.92554 1.24978 0.94969 0.98948 0.95106 1.69978 1.15608 1.30906 1.36476 0.86629 0.79425 0.84652 0.77501 1.20729 1.21320 1.19917 1.22670 0.96881 0.94452 1.00663 0.93189 0.91577 0.93083 0.90552 0.92655 0.92328 0.92655 0.93968 0.93992 0.93732 0.92308 0.92632 0.92840 0.93137 0.91576 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.09 37.16 0.34 -1.32 16 2 C -0.10 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 4 C 0.07 0.93 5.15 37.16 0.19 1.12 16 5 O -0.38 -6.85 9.60 -35.23 -0.34 -7.18 16 6 C 0.08 1.58 3.35 -25.02 -0.08 1.49 16 7 H 0.05 0.98 7.82 -51.93 -0.41 0.58 16 8 C -0.15 -2.93 6.57 -25.56 -0.17 -3.10 16 9 C -0.09 -2.24 5.40 -25.61 -0.14 -2.38 16 10 C 0.05 1.24 2.79 -90.12 -0.25 0.99 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 13 H 0.06 1.56 7.78 -52.49 -0.41 1.15 16 14 C 0.06 1.73 5.33 -17.82 -0.09 1.63 16 15 N -0.89 -25.91 12.35 55.43 0.68 -25.23 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.11 -2.39 6.01 -24.74 -0.15 -2.53 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 32 H 0.05 1.40 7.93 -51.93 -0.41 0.99 16 33 H 0.05 1.37 7.83 -51.93 -0.41 0.97 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 290.39 15.07 4.38 4.38 Total: -1.00 -28.74 290.39 -7.55 -36.29 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.66 Total: -3.64 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.59 Total: -21.15 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.68 Total: -25.23 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.34 Total: -7.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.74 -7.55 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.048 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds