Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47036 * 2 1 4 4 C 1.52999 * 109.47297 * 119.99949 * 2 1 3 5 5 O 1.42901 * 109.46999 * 65.00133 * 4 2 1 6 6 C 1.42901 * 113.99832 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.43099 * 27.46061 * 6 5 4 8 8 C 1.54367 * 110.57624 * 264.82606 * 6 5 4 9 9 C 1.53876 * 106.54765 * 217.62985 * 8 6 5 10 10 C 1.54263 * 106.63651 * 0.04097 * 9 8 6 11 11 H 1.09005 * 110.48584 * 264.90184 * 10 9 8 12 12 C 1.50703 * 110.48612 * 142.39846 * 10 9 8 13 13 H 1.07998 * 119.99690 * 241.44817 * 12 10 9 14 14 C 1.37873 * 120.00157 * 61.44898 * 12 10 9 15 15 N 1.31515 * 120.00069 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00048 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47158 * 89.99935 * 16 14 12 18 18 H 1.48499 * 109.47228 * 210.00189 * 16 14 12 19 19 H 1.48506 * 109.47095 * 329.99898 * 16 14 12 20 20 C 1.54884 * 104.19983 * 23.58277 * 10 9 8 21 21 H 1.08999 * 109.47399 * 59.99778 * 1 2 3 22 22 H 1.09000 * 109.47006 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47076 * 299.99811 * 1 2 3 24 24 H 1.09002 * 109.47076 * 240.00189 * 2 1 3 25 25 H 1.08996 * 109.46716 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46629 * 300.00059 * 3 2 1 27 27 H 1.08993 * 109.46852 * 60.00325 * 3 2 1 28 28 H 1.08999 * 109.47488 * 304.99973 * 4 2 1 29 29 H 1.09002 * 109.46696 * 184.99740 * 4 2 1 30 30 H 1.09002 * 110.04920 * 98.36582 * 8 6 5 31 31 H 1.09003 * 110.07124 * 336.90216 * 8 6 5 32 32 H 1.09002 * 110.03428 * 240.72988 * 9 8 6 33 33 H 1.08995 * 110.02995 * 119.34836 * 9 8 6 34 34 H 0.97003 * 120.00314 * 179.97438 * 15 14 12 35 35 H 1.09007 * 110.75453 * 80.37494 * 20 10 9 36 36 H 1.08998 * 110.75749 * 203.55832 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1920 6 6 2.0925 -2.8663 2.3175 7 1 2.1887 -2.2306 3.1976 8 6 3.4303 -3.5734 2.0121 9 6 3.3565 -4.9579 2.6795 10 6 1.9776 -5.0445 3.3657 11 1 2.0553 -4.7607 4.4153 12 6 1.4110 -6.4351 3.2374 13 1 0.4801 -6.5925 2.7131 14 6 2.0811 -7.5062 3.7893 15 7 3.2145 -7.3144 4.4282 16 14 1.3791 -9.2299 3.6296 17 1 1.8976 -9.8627 2.3903 18 1 1.7842 -10.0404 4.8061 19 1 -0.1028 -9.1569 3.5655 20 6 1.1036 -4.0264 2.5921 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 1.6055 -0.2618 2.1370 29 1 3.1264 -0.6443 1.2950 30 1 4.2591 -3.0014 2.4293 31 1 3.5574 -3.6844 0.9352 32 1 4.1494 -5.0579 3.4207 33 1 3.4487 -5.7407 1.9266 34 1 3.6858 -8.0679 4.8169 35 1 0.7444 -4.4573 1.6575 36 1 0.2687 -3.6889 3.2062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -98.709827 kcal Electronic energy + Delta-G solvation = -14375.302420 eV Core-core repulsion = 12050.416364 eV Total energy + Delta-G solvation = -2324.886056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.90610 -37.76879 -35.62264 -34.11637 -29.98690 -28.95101 -27.97532 -26.67509 -25.63499 -21.56484 -21.02981 -20.85563 -18.56533 -17.45947 -16.67943 -16.55400 -16.23991 -15.48326 -14.80133 -14.59073 -14.08628 -13.84802 -13.81670 -13.20341 -13.02009 -12.91398 -12.73708 -12.43540 -12.39366 -12.20013 -11.89226 -11.72061 -11.60620 -11.45085 -11.30759 -11.05446 -10.77123 -10.48732 -10.28531 -8.12589 -6.22424 1.41590 1.41952 1.52642 2.43324 2.81704 3.18247 3.91184 3.92176 4.02566 4.09341 4.21661 4.28496 4.50167 4.60716 4.67716 4.81025 4.82001 4.84606 4.94962 5.03127 5.03500 5.09115 5.13465 5.14568 5.24759 5.37373 5.41067 5.47201 5.48832 5.65758 5.88803 5.96149 6.36481 6.48481 6.87519 7.44968 8.96598 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.067458 B = 0.005864 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.974274 B = 4773.735270 C = 5026.071569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.140 4.140 4 C 0.057 3.943 5 O -0.394 6.394 6 C 0.094 3.906 7 H 0.070 0.930 8 C -0.136 4.136 9 C -0.084 4.084 10 C 0.039 3.961 11 H 0.004 0.996 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.103 4.103 21 H 0.066 0.934 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.054 0.946 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 14.575 -6.761 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.197 4.197 4 C -0.020 4.020 5 O -0.313 6.313 6 C 0.036 3.964 7 H 0.088 0.912 8 C -0.174 4.174 9 C -0.123 4.123 10 C 0.021 3.979 11 H 0.022 0.978 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.780 3.220 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.141 4.141 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.672 14.410 -6.816 16.028 hybrid contribution 0.086 -1.203 0.401 1.271 sum -1.587 13.207 -6.415 14.768 Atomic orbital electron populations 1.21763 0.94635 1.01444 1.02109 1.21133 0.96801 0.96615 0.96844 1.21751 1.01305 0.93727 1.02918 1.22809 0.98763 0.81503 0.98877 1.87895 1.78497 1.21080 1.43871 1.22945 0.93827 0.91776 0.87825 0.91194 1.22637 0.97409 0.96771 1.00611 1.21788 0.98942 0.93919 0.97613 1.19399 0.92011 0.93121 0.93399 0.97751 1.21511 1.07538 0.93083 1.35134 0.92958 1.25760 0.95273 1.02868 0.94727 1.70093 1.16644 1.32028 1.37099 0.85609 0.78942 0.79816 0.77625 1.20178 1.20744 1.19220 1.22504 0.97218 0.94722 0.99617 0.91463 0.93908 0.92480 0.91310 0.92141 0.90957 0.91968 0.93012 0.93188 0.91410 0.91883 0.94617 0.95389 0.93040 0.92715 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.09 71.98 0.65 -2.35 16 2 C -0.10 -2.04 3.16 -10.79 -0.03 -2.08 16 3 C -0.14 -2.17 9.19 71.98 0.66 -1.51 16 4 C 0.06 1.47 5.15 71.98 0.37 1.84 16 5 O -0.39 -13.49 9.60 -148.98 -1.43 -14.92 16 6 C 0.09 3.49 3.35 31.70 0.11 3.60 16 7 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 8 C -0.14 -5.32 6.57 31.35 0.21 -5.12 16 9 C -0.08 -4.13 5.40 31.32 0.17 -3.96 16 10 C 0.04 2.04 2.79 -10.47 -0.03 2.01 16 11 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 12 C -0.53 -30.48 8.41 25.60 0.22 -30.26 16 13 H 0.05 2.94 7.78 -2.91 -0.02 2.92 16 14 C 0.01 0.71 5.33 84.65 0.45 1.16 16 15 N -0.92 -54.39 12.35 21.45 0.26 -54.12 16 16 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 C -0.10 -4.49 6.01 31.88 0.19 -4.30 16 21 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.04 1.09 7.82 -2.39 -0.02 1.07 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 1.25 8.11 -2.39 -0.02 1.23 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.03 1.84 7.93 -2.39 -0.02 1.82 16 33 H 0.03 1.46 7.83 -2.39 -0.02 1.44 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.05 2.48 8.05 -2.38 -0.02 2.47 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.51 290.39 4.83 -56.69 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 1.00 Total: 6.78 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 2.96 Total: -40.97 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.26 Total: -54.12 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.43 Total: -14.92 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.51 4.83 -56.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.024 kcal (2) G-P(sol) polarization free energy of solvation -61.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds