Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53000 * 109.46682 * 119.99641 * 2 1 3 5 5 O 1.42899 * 109.46921 * 175.00067 * 4 2 1 6 6 C 1.42899 * 113.99995 * 179.97438 * 5 4 2 7 7 H 1.08991 * 110.43691 * 328.91320 * 6 5 4 8 8 C 1.54265 * 110.48374 * 91.45536 * 6 5 4 9 9 C 1.53878 * 106.59568 * 142.42101 * 8 6 5 10 10 C 1.54263 * 106.60185 * 359.97438 * 9 8 6 11 11 H 1.09000 * 110.48676 * 95.20109 * 10 9 8 12 12 C 1.50694 * 110.48863 * 217.71349 * 10 9 8 13 13 H 1.08000 * 120.00563 * 118.54644 * 12 10 9 14 14 C 1.37885 * 119.99902 * 298.54481 * 12 10 9 15 15 N 1.31516 * 119.99913 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99854 * 179.72538 * 14 12 10 17 17 H 1.48504 * 109.47032 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46816 * 120.00323 * 16 14 12 19 19 H 1.48495 * 109.46630 * 240.00111 * 16 14 12 20 20 C 1.54890 * 110.59769 * 206.29563 * 6 5 4 21 21 H 1.09002 * 109.47437 * 300.00429 * 1 2 3 22 22 H 1.09006 * 109.46622 * 60.00565 * 1 2 3 23 23 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47177 * 240.00042 * 2 1 3 25 25 H 1.09000 * 109.47036 * 299.99906 * 3 2 1 26 26 H 1.09002 * 109.47379 * 59.99536 * 3 2 1 27 27 H 1.08995 * 109.47292 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46909 * 55.00163 * 4 2 1 29 29 H 1.09002 * 109.47297 * 295.00309 * 4 2 1 30 30 H 1.09000 * 110.03625 * 23.13733 * 8 6 5 31 31 H 1.09000 * 110.07521 * 261.72359 * 8 6 5 32 32 H 1.09000 * 110.03294 * 240.71071 * 9 8 6 33 33 H 1.09002 * 110.03349 * 119.28571 * 9 8 6 34 34 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 35 35 H 1.08998 * 110.75708 * 85.01241 * 20 6 5 36 36 H 1.08997 * 110.75734 * 321.63557 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8238 1.1922 6 6 4.0449 -1.4845 2.3182 7 1 3.4470 -1.3091 3.2125 8 6 4.1790 -2.9971 2.0466 9 6 5.5063 -3.4423 2.6852 10 6 6.1328 -2.1847 3.3221 11 1 5.8740 -2.1232 4.3791 12 6 7.6294 -2.1942 3.1464 13 1 8.1127 -1.4065 2.5875 14 6 8.3820 -3.2087 3.6994 15 7 7.7935 -4.1682 4.3796 16 14 10.2364 -3.2247 3.4751 17 1 10.6480 -2.0460 2.6709 18 1 10.8962 -3.1712 4.8044 19 1 10.6392 -4.4692 2.7723 20 6 5.5020 -1.0074 2.5382 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6053 -1.7197 1.2952 29 1 1.7515 -0.1582 2.1370 30 1 4.2004 -3.1832 0.9728 31 1 3.3470 -3.5342 2.5019 32 1 6.1718 -3.8446 1.9213 33 1 5.3184 -4.1949 3.4510 34 1 8.3230 -4.8817 4.7688 35 1 5.5237 -0.0928 3.1308 36 1 6.0093 -0.8631 1.5843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = -83.417843 kcal Electronic energy + Delta-G solvation = -14377.368257 eV Core-core repulsion = 12053.145311 eV Total energy + Delta-G solvation = -2324.222946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.44057 -36.31364 -34.31511 -32.10751 -28.10774 -27.31182 -27.12854 -25.39386 -23.69061 -20.32734 -19.54265 -19.03869 -16.73745 -15.78624 -15.52027 -14.84373 -14.43441 -14.14243 -13.61504 -13.11817 -12.71193 -12.33084 -12.22354 -12.18942 -11.59528 -11.15393 -11.13896 -11.01097 -10.90061 -10.65002 -10.47798 -10.43753 -10.13777 -9.79774 -9.47613 -9.22503 -8.81426 -8.67988 -8.34882 -5.97354 -3.99715 3.32584 3.40510 3.45056 4.08578 4.48450 4.88575 4.95103 5.20387 5.34690 5.50264 5.54057 5.57039 5.61382 5.69178 5.81721 5.84038 5.91708 5.96986 6.05082 6.21000 6.33021 6.38026 6.60337 6.66459 6.82070 6.84883 7.02846 7.25747 7.37783 7.75177 7.81114 7.96805 8.05751 8.50248 9.03210 9.64136 11.12470 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.067840 B = 0.005859 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.635747 B = 4777.525295 C = 5023.406884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.066 3.934 5 O -0.381 6.381 6 C 0.082 3.918 7 H 0.053 0.947 8 C -0.148 4.148 9 C -0.093 4.093 10 C 0.048 3.952 11 H 0.029 0.971 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.107 4.107 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.258 0.742 35 H 0.049 0.951 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 6.089 -5.963 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.011 4.011 5 O -0.301 6.301 6 C 0.024 3.976 7 H 0.071 0.929 8 C -0.186 4.186 9 C -0.131 4.131 10 C 0.030 3.970 11 H 0.047 0.953 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.145 4.145 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.853 5.989 -6.017 14.579 hybrid contribution 0.788 -0.347 0.185 0.881 sum -11.065 5.642 -5.831 13.721 Atomic orbital electron populations 1.21785 0.94819 1.01774 1.01865 1.21096 0.95037 0.96971 0.98365 1.21770 1.02275 0.95088 1.00907 1.22490 0.82968 0.98486 0.97175 1.87910 1.18456 1.79052 1.44640 1.23212 0.95438 0.92252 0.86662 0.92854 1.22758 0.99794 0.95316 1.00703 1.22002 0.92187 0.99916 0.99010 1.19417 0.94608 0.88753 0.94243 0.95336 1.21195 0.91431 1.08903 1.33429 0.92485 1.24987 0.98325 0.95622 0.95097 1.69990 1.35169 1.12395 1.35403 0.86574 0.85958 0.77919 0.77794 1.19755 1.21105 1.21093 1.22652 0.91628 0.99343 1.00887 0.92658 0.92331 0.92650 0.90546 0.93188 0.93090 0.91584 0.93968 0.93989 0.92331 0.93752 0.92832 0.92639 0.93193 0.93179 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 2 C -0.10 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.14 -1.65 9.09 37.16 0.34 -1.31 16 4 C 0.07 0.93 5.18 37.16 0.19 1.13 16 5 O -0.38 -6.85 9.59 -35.23 -0.34 -7.19 16 6 C 0.08 1.58 3.32 -25.07 -0.08 1.49 16 7 H 0.05 0.97 7.86 -51.93 -0.41 0.57 16 8 C -0.15 -2.96 6.56 -25.61 -0.17 -3.13 16 9 C -0.09 -2.24 5.40 -25.61 -0.14 -2.37 16 10 C 0.05 1.23 2.79 -90.13 -0.25 0.98 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 12 C -0.51 -14.31 8.40 -34.44 -0.29 -14.59 16 13 H 0.06 1.58 7.77 -52.49 -0.41 1.17 16 14 C 0.06 1.72 5.33 -17.82 -0.09 1.62 16 15 N -0.89 -25.90 12.35 55.43 0.68 -25.21 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.11 -2.35 6.01 -24.75 -0.15 -2.50 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.88 7.82 -51.93 -0.41 0.47 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.57 8.10 -51.93 -0.42 0.14 16 30 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.38 7.83 -51.93 -0.41 0.97 16 33 H 0.05 1.40 7.94 -51.93 -0.41 0.99 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.50 8.05 -51.93 -0.42 1.09 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -28.75 290.40 -7.55 -36.29 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.66 Total: -3.66 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -0.59 Total: -21.13 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.68 Total: -25.21 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.34 Total: -7.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.75 -7.55 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.123 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds