Wall clock time and date at job start Mon Mar 30 2020 02:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47188 * 2 1 4 4 C 1.53004 * 109.47380 * 120.00202 * 2 1 3 5 5 O 1.42900 * 109.47055 * 175.00320 * 4 2 1 6 6 C 1.42901 * 113.99667 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.43608 * 27.45634 * 6 5 4 8 8 C 1.54893 * 110.59526 * 264.83514 * 6 5 4 9 9 C 1.54887 * 102.74533 * 203.32598 * 8 6 5 10 10 C 1.54266 * 104.19888 * 37.94403 * 9 8 6 11 11 H 1.09003 * 110.03179 * 95.67576 * 10 9 8 12 12 C 1.50699 * 110.03124 * 217.10208 * 10 9 8 13 13 H 1.08006 * 119.99972 * 118.54781 * 12 10 9 14 14 C 1.37871 * 120.00221 * 298.54296 * 12 10 9 15 15 N 1.31509 * 120.00480 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99993 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47110 * 120.00552 * 16 14 12 19 19 H 1.48500 * 109.47494 * 240.00448 * 16 14 12 20 20 C 1.53872 * 106.59640 * 336.38805 * 10 9 8 21 21 H 1.08994 * 109.47179 * 299.99444 * 1 2 3 22 22 H 1.08991 * 109.47117 * 60.00162 * 1 2 3 23 23 H 1.09003 * 109.46516 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46904 * 240.00093 * 2 1 3 25 25 H 1.08997 * 109.48020 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47089 * 300.00568 * 3 2 1 27 27 H 1.09002 * 109.47251 * 59.99698 * 3 2 1 28 28 H 1.09005 * 109.47062 * 55.00215 * 4 2 1 29 29 H 1.08998 * 109.46945 * 295.00205 * 4 2 1 30 30 H 1.09001 * 110.75228 * 85.01334 * 8 6 5 31 31 H 1.09000 * 110.75571 * 321.63967 * 8 6 5 32 32 H 1.09001 * 110.48816 * 279.26329 * 9 8 6 33 33 H 1.09004 * 110.48531 * 156.62545 * 9 8 6 34 34 H 0.96996 * 120.01159 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.03208 * 119.28196 * 20 10 9 36 36 H 1.09000 * 110.03462 * 240.66592 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8237 1.1920 6 6 4.0450 -1.4856 2.3174 7 1 3.3363 -2.1907 2.7518 8 6 4.5038 -0.4548 3.3787 9 6 5.5906 -1.2319 4.1623 10 6 6.3267 -2.0482 3.0799 11 1 7.2173 -1.5134 2.7500 12 6 6.7079 -3.4010 3.6238 13 1 6.3125 -4.2971 3.1686 14 6 7.5616 -3.4947 4.7023 15 7 8.0428 -2.4037 5.2569 16 14 8.0336 -5.1715 5.3769 17 1 7.3625 -6.2315 4.5825 18 1 9.5059 -5.3443 5.2881 19 1 7.6082 -5.2719 6.7961 20 6 5.3439 -2.2096 1.9069 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6055 -1.7199 1.2951 29 1 1.7517 -0.1584 2.1369 30 1 3.6768 -0.1808 4.0337 31 1 4.9288 0.4281 2.9012 32 1 5.1315 -1.8959 4.8947 33 1 6.2768 -0.5399 4.6508 34 1 8.6431 -2.4696 6.0160 35 1 5.7576 -1.7530 1.0077 36 1 5.1434 -3.2663 1.7304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261168413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:59 Heat of formation + Delta-G solvation = -82.952614 kcal Electronic energy + Delta-G solvation = -14410.873577 eV Core-core repulsion = 12086.670805 eV Total energy + Delta-G solvation = -2324.202772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.42550 -36.32263 -34.31776 -32.09079 -28.11213 -27.29960 -27.10648 -25.35375 -23.70491 -20.25611 -19.74660 -18.84732 -16.73402 -16.13862 -15.45232 -14.66817 -14.47330 -13.91601 -13.55183 -13.30486 -12.61324 -12.35309 -12.17998 -12.00069 -11.87300 -11.24589 -11.11460 -11.01266 -10.73535 -10.66834 -10.48188 -10.40562 -10.08220 -9.76445 -9.52925 -9.31299 -8.78128 -8.67660 -8.33565 -5.97290 -4.00038 3.31371 3.39481 3.43389 4.10055 4.46982 4.89145 4.95599 5.20762 5.34407 5.51048 5.56858 5.58991 5.62589 5.70614 5.83796 5.84396 5.94896 5.97465 6.05578 6.24396 6.38238 6.38804 6.59430 6.66379 6.75317 6.87252 7.07542 7.25404 7.39546 7.76148 7.84978 7.92819 8.06004 8.50130 9.03310 9.63672 11.12195 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.068572 B = 0.005890 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.233915 B = 4752.491072 C = 4917.167749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.066 3.934 5 O -0.383 6.383 6 C 0.085 3.915 7 H 0.056 0.944 8 C -0.148 4.148 9 C -0.090 4.090 10 C 0.045 3.955 11 H 0.029 0.971 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.110 4.110 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.258 0.742 35 H 0.052 0.948 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 4.731 -6.880 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.011 4.011 5 O -0.303 6.303 6 C 0.028 3.972 7 H 0.074 0.926 8 C -0.186 4.186 9 C -0.128 4.128 10 C 0.026 3.974 11 H 0.047 0.953 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.148 4.148 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.806 4.853 -6.886 14.503 hybrid contribution 0.127 -1.002 0.776 1.274 sum -11.679 3.851 -6.110 13.732 Atomic orbital electron populations 1.21783 0.94823 1.01767 1.01880 1.21095 0.95040 0.96984 0.98330 1.21766 1.02238 0.95095 1.00912 1.22493 0.82851 0.98488 0.97238 1.87890 1.18537 1.79267 1.44600 1.23168 0.95098 0.93194 0.85731 0.92580 1.23064 0.99351 0.98644 0.97533 1.22203 0.94994 0.97554 0.98053 1.19219 0.92700 0.95682 0.89761 0.95276 1.21349 1.27519 0.92038 1.14208 0.92606 1.24990 0.95975 0.96285 0.96816 1.69981 1.32618 1.27050 1.23191 0.86597 0.78236 0.84737 0.78800 1.19820 1.21076 1.21116 1.22376 0.93954 0.98480 0.99969 0.92636 0.92337 0.92658 0.90585 0.91626 0.93218 0.93054 0.94009 0.93910 0.93658 0.91944 0.92909 0.92263 0.93179 0.92960 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 2 C -0.10 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.14 -1.66 9.09 37.15 0.34 -1.32 16 4 C 0.07 0.95 5.16 37.16 0.19 1.14 16 5 O -0.38 -6.89 9.59 -35.23 -0.34 -7.23 16 6 C 0.09 1.67 3.35 -25.07 -0.08 1.58 16 7 H 0.06 1.06 7.82 -51.93 -0.41 0.66 16 8 C -0.15 -2.96 6.62 -24.74 -0.16 -3.12 16 9 C -0.09 -2.15 5.36 -25.07 -0.13 -2.28 16 10 C 0.04 1.15 2.84 -90.66 -0.26 0.89 16 11 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -14.26 8.38 -34.44 -0.29 -14.55 16 13 H 0.06 1.53 7.33 -52.48 -0.38 1.15 16 14 C 0.06 1.70 5.32 -17.82 -0.09 1.61 16 15 N -0.89 -25.84 12.33 55.43 0.68 -25.15 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.11 -2.42 6.20 -25.61 -0.16 -2.58 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.88 7.82 -51.93 -0.41 0.47 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.32 7.85 -51.93 -0.41 0.91 16 33 H 0.06 1.50 7.93 -51.93 -0.41 1.09 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.06 1.27 7.37 -51.93 -0.38 0.89 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -28.64 289.47 -7.51 -36.15 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.60 Total: -3.46 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.60 Total: -21.08 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.68 Total: -25.15 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.34 Total: -7.23 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.64 -7.51 -36.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.802 kcal (2) G-P(sol) polarization free energy of solvation -28.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds