Wall clock time and date at job start Mon Mar 30 2020 02:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47188 * 2 1 4 4 C 1.53004 * 109.47380 * 120.00202 * 2 1 3 5 5 O 1.42900 * 109.47055 * 175.00320 * 4 2 1 6 6 C 1.42901 * 113.99667 * 180.02562 * 5 4 2 7 7 H 1.09001 * 110.43608 * 27.45634 * 6 5 4 8 8 C 1.54893 * 110.59526 * 264.83514 * 6 5 4 9 9 C 1.54887 * 102.74533 * 203.32598 * 8 6 5 10 10 C 1.54266 * 104.19888 * 37.94403 * 9 8 6 11 11 H 1.09003 * 110.03179 * 95.67576 * 10 9 8 12 12 C 1.50699 * 110.03124 * 217.10208 * 10 9 8 13 13 H 1.08006 * 119.99972 * 118.54781 * 12 10 9 14 14 C 1.37871 * 120.00221 * 298.54296 * 12 10 9 15 15 N 1.31509 * 120.00480 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99993 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47110 * 120.00552 * 16 14 12 19 19 H 1.48500 * 109.47494 * 240.00448 * 16 14 12 20 20 C 1.53872 * 106.59640 * 336.38805 * 10 9 8 21 21 H 1.08994 * 109.47179 * 299.99444 * 1 2 3 22 22 H 1.08991 * 109.47117 * 60.00162 * 1 2 3 23 23 H 1.09003 * 109.46516 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46904 * 240.00093 * 2 1 3 25 25 H 1.08997 * 109.48020 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47089 * 300.00568 * 3 2 1 27 27 H 1.09002 * 109.47251 * 59.99698 * 3 2 1 28 28 H 1.09005 * 109.47062 * 55.00215 * 4 2 1 29 29 H 1.08998 * 109.46945 * 295.00205 * 4 2 1 30 30 H 1.09001 * 110.75228 * 85.01334 * 8 6 5 31 31 H 1.09000 * 110.75571 * 321.63967 * 8 6 5 32 32 H 1.09001 * 110.48816 * 279.26329 * 9 8 6 33 33 H 1.09004 * 110.48531 * 156.62545 * 9 8 6 34 34 H 0.96996 * 120.01159 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.03208 * 119.28196 * 20 10 9 36 36 H 1.09000 * 110.03462 * 240.66592 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8237 1.1920 6 6 4.0450 -1.4856 2.3174 7 1 3.3363 -2.1907 2.7518 8 6 4.5038 -0.4548 3.3787 9 6 5.5906 -1.2319 4.1623 10 6 6.3267 -2.0482 3.0799 11 1 7.2173 -1.5134 2.7500 12 6 6.7079 -3.4010 3.6238 13 1 6.3125 -4.2971 3.1686 14 6 7.5616 -3.4947 4.7023 15 7 8.0428 -2.4037 5.2569 16 14 8.0336 -5.1715 5.3769 17 1 7.3625 -6.2315 4.5825 18 1 9.5059 -5.3443 5.2881 19 1 7.6082 -5.2719 6.7961 20 6 5.3439 -2.2096 1.9069 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6055 -1.7199 1.2951 29 1 1.7517 -0.1584 2.1369 30 1 3.6768 -0.1808 4.0337 31 1 4.9288 0.4281 2.9012 32 1 5.1315 -1.8959 4.8947 33 1 6.2768 -0.5399 4.6508 34 1 8.6431 -2.4696 6.0160 35 1 5.7576 -1.7530 1.0077 36 1 5.1434 -3.2663 1.7304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:58 Heat of formation + Delta-G solvation = -98.238378 kcal Electronic energy + Delta-G solvation = -14411.536417 eV Core-core repulsion = 12086.670805 eV Total energy + Delta-G solvation = -2324.865612 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91650 -37.78430 -35.62383 -34.09599 -30.00110 -28.92583 -27.97584 -26.63956 -25.66142 -21.50156 -21.25227 -20.64215 -18.61429 -17.75287 -16.73129 -16.45942 -15.95200 -15.25579 -14.93638 -14.73971 -14.24542 -13.80177 -13.52440 -13.28256 -13.03403 -12.96208 -12.70321 -12.59661 -12.33305 -12.08797 -11.85362 -11.67031 -11.53071 -11.47299 -11.34524 -11.19916 -10.76252 -10.47411 -10.27069 -8.11793 -6.22166 1.40583 1.42263 1.53924 2.43709 2.80434 3.18822 3.90255 3.93560 4.03390 4.08905 4.24960 4.30287 4.51295 4.65187 4.67645 4.77297 4.83573 4.85511 4.96251 4.96997 5.03483 5.08366 5.13602 5.19615 5.24947 5.36373 5.42722 5.47430 5.49978 5.66165 5.89427 5.95454 6.35199 6.48120 6.89180 7.45325 8.97414 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.068572 B = 0.005890 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.233915 B = 4752.491072 C = 4917.167749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.057 3.943 5 O -0.394 6.394 6 C 0.097 3.903 7 H 0.067 0.933 8 C -0.135 4.135 9 C -0.081 4.081 10 C 0.036 3.964 11 H -0.005 1.005 12 C -0.532 4.532 13 H 0.055 0.945 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.279 1.279 20 C -0.105 4.105 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.831 4.408 -7.243 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.019 4.019 5 O -0.314 6.314 6 C 0.040 3.960 7 H 0.085 0.915 8 C -0.173 4.173 9 C -0.120 4.120 10 C 0.018 3.982 11 H 0.013 0.987 12 C -0.570 4.570 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.560 5.560 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.143 4.143 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.612 4.532 -7.263 16.081 hybrid contribution 0.686 -0.864 0.846 1.391 sum -12.926 3.668 -6.417 14.890 Atomic orbital electron populations 1.21751 0.92576 1.02494 1.02904 1.21129 0.96796 0.96589 0.96817 1.21759 1.00754 0.95339 1.02080 1.22803 0.80687 0.99545 0.98887 1.87875 1.20965 1.78929 1.43625 1.22869 0.94237 0.92975 0.85965 0.91517 1.22939 0.98672 0.98207 0.97494 1.21971 0.95559 0.96975 0.97473 1.19217 0.92596 0.94801 0.91625 0.98725 1.21685 1.27877 0.92901 1.14547 0.92684 1.25789 0.95911 0.99987 0.97108 1.70107 1.33115 1.29146 1.23604 0.85547 0.77882 0.80310 0.78183 1.19000 1.20725 1.20514 1.22218 0.94677 0.98929 0.98453 0.92052 0.90910 0.92119 0.91175 0.93896 0.91433 0.92576 0.93158 0.93185 0.91104 0.91841 0.94440 0.94636 0.93075 0.92896 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.19 71.98 0.66 -1.53 16 2 C -0.09 -2.03 3.16 -10.79 -0.03 -2.06 16 3 C -0.14 -3.01 9.09 71.98 0.65 -2.36 16 4 C 0.06 1.50 5.16 71.98 0.37 1.87 16 5 O -0.39 -13.52 9.59 -148.98 -1.43 -14.95 16 6 C 0.10 3.66 3.35 31.67 0.11 3.77 16 7 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 8 C -0.14 -5.26 6.62 31.89 0.21 -5.05 16 9 C -0.08 -3.96 5.36 31.67 0.17 -3.79 16 10 C 0.04 1.89 2.84 -10.82 -0.03 1.86 16 11 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 12 C -0.53 -29.98 8.38 25.60 0.21 -29.77 16 13 H 0.05 3.03 7.33 -2.91 -0.02 3.01 16 14 C 0.01 0.60 5.32 84.65 0.45 1.05 16 15 N -0.92 -54.47 12.33 21.44 0.26 -54.20 16 16 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 C -0.11 -4.62 6.20 31.32 0.19 -4.42 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.04 1.09 7.82 -2.39 -0.02 1.08 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.24 8.11 -2.38 -0.02 1.22 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.04 1.89 7.85 -2.39 -0.02 1.87 16 33 H 0.03 1.84 7.93 -2.38 -0.02 1.83 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.05 2.27 8.07 -2.39 -0.02 2.25 16 36 H 0.06 2.48 7.37 -2.39 -0.02 2.46 16 Total: -1.00 -61.25 289.47 4.83 -56.42 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.00 Total: 7.03 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 2.97 Total: -40.43 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.26 Total: -54.20 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -1.43 Total: -14.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.25 4.83 -56.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.821 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds