Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.46950 * 2 1 4 4 H 1.07999 * 119.99849 * 239.99948 * 3 2 1 5 5 C 1.37868 * 120.00323 * 59.99942 * 3 2 1 6 6 N 1.31517 * 120.00024 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 120.00435 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.46869 * 59.99963 * 7 5 3 9 9 H 1.48498 * 109.47306 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47078 * 300.00296 * 7 5 3 11 11 C 1.53006 * 109.47280 * 119.99759 * 2 1 3 12 12 O 1.42903 * 109.46925 * 178.56238 * 11 2 1 13 13 C 1.53002 * 109.47248 * 239.99888 * 2 1 3 14 14 C 1.52999 * 109.47073 * 59.68104 * 13 2 1 15 15 C 1.52997 * 109.47084 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47547 * 59.99445 * 15 14 13 17 17 C 1.52999 * 109.47382 * 300.00372 * 16 15 14 18 18 C 1.53002 * 109.47073 * 59.99673 * 17 16 15 19 19 H 1.09000 * 109.47471 * 299.99927 * 1 2 3 20 20 H 1.08995 * 109.47520 * 60.00491 * 1 2 3 21 21 H 1.09004 * 109.46732 * 180.02562 * 1 2 3 22 22 H 0.97002 * 120.00265 * 180.02562 * 6 5 3 23 23 H 1.09000 * 109.47080 * 58.55922 * 11 2 1 24 24 H 1.09001 * 109.47132 * 298.56005 * 11 2 1 25 25 H 0.96701 * 113.99330 * 180.02562 * 12 11 2 26 26 H 1.08996 * 109.47220 * 179.67815 * 13 2 1 27 27 H 1.09004 * 109.46609 * 299.99960 * 14 13 2 28 28 H 1.09000 * 109.47283 * 59.99919 * 14 13 2 29 29 H 1.09004 * 109.47097 * 299.99333 * 15 14 13 30 30 H 1.09006 * 109.47136 * 180.02562 * 15 14 13 31 31 H 1.08997 * 109.47212 * 179.97438 * 16 15 14 32 32 H 1.09009 * 109.46798 * 60.00268 * 16 15 14 33 33 H 1.08996 * 109.46861 * 299.99743 * 17 16 15 34 34 H 1.09000 * 109.47283 * 179.97438 * 17 16 15 35 35 H 1.08994 * 109.47312 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47220 * 60.00290 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6532 1.7741 -0.8100 5 6 1.6992 2.2698 1.0340 6 7 0.9435 1.8396 2.0206 7 14 2.3224 4.0308 1.0344 8 1 1.8279 4.7311 -0.1782 9 1 1.8268 4.7311 2.2465 10 1 3.8073 4.0304 1.0347 11 6 2.0400 -0.7212 1.2493 12 8 3.4686 -0.7505 1.2325 13 6 2.0400 -0.7213 -1.2492 14 6 1.5235 -0.0047 -2.4985 15 6 2.0330 -0.7263 -3.7477 16 6 1.5292 -2.1710 -3.7433 17 6 2.0457 -2.8876 -2.4941 18 6 1.5361 -2.1660 -1.2449 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7088 2.4370 2.7480 23 1 1.6558 -1.7412 1.2624 24 1 1.6979 -0.1927 2.1391 25 1 3.8619 -1.1942 1.9964 26 1 3.1299 -0.7163 -1.2521 27 1 0.4334 -0.0097 -2.4955 28 1 1.8821 1.0246 -2.5014 29 1 3.1230 -0.7217 -3.7508 30 1 1.6653 -0.2155 -4.6377 31 1 1.8918 -2.6849 -4.6335 32 1 0.4391 -2.1756 -3.7403 33 1 3.1357 -2.8829 -2.4972 34 1 1.6864 -3.9166 -2.4908 35 1 1.9045 -2.6761 -0.3549 36 1 0.4462 -2.1706 -1.2418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = -79.649866 kcal Electronic energy + Delta-G solvation = -15507.511369 eV Core-core repulsion = 13183.451815 eV Total energy + Delta-G solvation = -2324.059554 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.62316 -35.73456 -33.64405 -31.40967 -30.12306 -27.84826 -25.25224 -24.56444 -22.16894 -21.62644 -19.48631 -17.83264 -15.99802 -15.71940 -15.19040 -14.28885 -13.64951 -13.53797 -13.42722 -13.23173 -12.58982 -11.75062 -11.56897 -11.52619 -11.35582 -11.02913 -10.82148 -10.72762 -10.55474 -10.31135 -10.14191 -10.02929 -9.92247 -9.47034 -9.16280 -8.85463 -8.51628 -8.39008 -8.11209 -5.85512 -3.91115 3.38242 3.41689 3.46110 4.52170 5.28964 5.38980 5.39379 5.41491 5.71650 5.91140 5.99915 6.13336 6.15075 6.19596 6.27360 6.32075 6.48634 6.63163 6.69044 6.75694 6.80769 6.88998 6.95606 7.05738 7.20089 7.27258 7.31678 7.41511 7.59634 7.80572 7.99216 8.26945 8.57301 8.94229 9.06411 9.71478 11.15705 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036196 B = 0.011155 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.376428 B = 2509.396411 C = 2812.247510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 C -0.477 4.477 4 H 0.054 0.946 5 C 0.060 3.940 6 N -0.898 5.898 7 Si 0.889 3.111 8 H -0.280 1.280 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.083 3.917 12 O -0.565 6.565 13 C -0.064 4.064 14 C -0.108 4.108 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.117 4.117 19 H 0.081 0.919 20 H 0.034 0.966 21 H 0.011 0.989 22 H 0.257 0.743 23 H -0.003 1.003 24 H 0.074 0.926 25 H 0.346 0.654 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -6.585 -5.419 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.077 3.923 3 C -0.515 4.515 4 H 0.072 0.928 5 C -0.139 4.139 6 N -0.539 5.539 7 Si 0.717 3.283 8 H -0.206 1.206 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.006 3.994 12 O -0.366 6.366 13 C -0.082 4.082 14 C -0.145 4.145 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.154 4.154 19 H 0.099 0.901 20 H 0.054 0.946 21 H 0.030 0.970 22 H 0.067 0.933 23 H 0.015 0.985 24 H 0.092 0.908 25 H 0.189 0.811 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.216 -6.173 -5.831 8.494 hybrid contribution 0.384 0.657 0.642 0.996 sum 0.601 -5.515 -5.189 7.597 Atomic orbital electron populations 1.21851 0.97724 0.97151 1.02484 1.18083 0.91752 0.93900 0.88526 1.21003 1.29471 0.94758 1.06289 0.92774 1.24875 0.95248 0.98183 0.95615 1.69755 1.37916 1.35315 1.10893 0.86714 0.79230 0.85269 0.77063 1.20554 1.21590 1.20480 1.22518 0.78769 0.94830 1.03300 1.86572 1.21979 1.81365 1.46718 1.21025 0.99581 0.92128 0.95497 1.21580 1.00161 0.99558 0.93187 1.21599 1.00321 0.95309 0.98585 1.21500 1.00327 0.96288 0.97139 1.21535 1.00347 0.97917 0.95659 1.21717 1.00229 0.97325 0.96138 0.90063 0.94647 0.97045 0.93289 0.98499 0.90814 0.81146 0.92123 0.92639 0.91449 0.92730 0.93262 0.93337 0.92547 0.92614 0.93372 0.92713 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.54 37.16 0.28 -2.88 16 2 C 0.08 1.87 0.14 -155.66 -0.02 1.85 16 3 C -0.48 -12.90 6.97 -34.44 -0.24 -13.14 16 4 H 0.05 1.49 6.73 -52.49 -0.35 1.14 16 5 C 0.06 1.63 5.15 -17.82 -0.09 1.54 16 6 N -0.90 -24.87 9.34 55.43 0.52 -24.35 16 7 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 C 0.08 1.98 5.31 37.16 0.20 2.17 16 12 O -0.57 -12.99 12.59 -35.23 -0.44 -13.44 16 13 C -0.06 -1.35 1.35 -90.62 -0.12 -1.47 16 14 C -0.11 -2.10 4.59 -26.73 -0.12 -2.22 16 15 C -0.12 -1.96 5.92 -26.73 -0.16 -2.11 16 16 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 17 C -0.12 -1.83 5.92 -26.73 -0.16 -1.99 16 18 C -0.12 -2.15 4.50 -26.73 -0.12 -2.27 16 19 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 20 H 0.03 0.81 6.42 -51.93 -0.33 0.47 16 21 H 0.01 0.23 6.44 -51.93 -0.33 -0.10 16 22 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.00 -0.07 6.50 -51.93 -0.34 -0.40 16 24 H 0.07 1.94 6.03 -51.93 -0.31 1.62 16 25 H 0.35 6.22 9.12 45.56 0.42 6.63 16 26 H 0.06 1.40 7.65 -51.93 -0.40 1.01 16 27 H 0.05 1.09 6.42 -51.93 -0.33 0.75 16 28 H 0.07 1.43 6.64 -51.93 -0.34 1.09 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 1.03 6.45 -51.93 -0.34 0.69 16 36 H 0.06 1.04 6.43 -51.93 -0.33 0.71 16 LS Contribution 264.19 15.07 3.98 3.98 Total: -1.00 -28.28 264.19 -6.67 -34.95 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.99 Total: 4.61 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -0.72 Total: -22.38 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.52 Total: -24.35 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.44 Total: -13.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.28 -6.67 -34.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.702 kcal (2) G-P(sol) polarization free energy of solvation -28.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds