Wall clock time and date at job start Mon Mar 30 2020 02:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 H 1.07999 * 120.00196 * 119.99595 * 3 2 1 5 5 C 1.37879 * 119.99394 * 299.99727 * 3 2 1 6 6 N 1.31514 * 120.00338 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99424 * 180.02562 * 5 3 2 8 8 H 1.48490 * 109.47405 * 60.00219 * 7 5 3 9 9 H 1.48503 * 109.46845 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47399 * 299.99813 * 7 5 3 11 11 C 1.52992 * 109.47482 * 239.99661 * 2 1 3 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 2 1 13 13 C 1.52999 * 109.47317 * 119.99518 * 2 1 3 14 14 C 1.53006 * 109.46997 * 60.00177 * 13 2 1 15 15 C 1.53002 * 109.47351 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47233 * 59.99540 * 15 14 13 17 17 C 1.52996 * 109.47328 * 300.00469 * 16 15 14 18 18 C 1.53002 * 109.47343 * 59.99997 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 22 22 H 0.96996 * 119.99730 * 179.97438 * 6 5 3 23 23 H 1.09002 * 109.47103 * 300.00247 * 11 2 1 24 24 H 1.09001 * 109.47066 * 60.00169 * 11 2 1 25 25 H 0.96705 * 114.00563 * 180.02562 * 12 11 2 26 26 H 1.09000 * 109.47486 * 180.02562 * 13 2 1 27 27 H 1.09000 * 109.46866 * 300.00212 * 14 13 2 28 28 H 1.08996 * 109.47261 * 59.99820 * 14 13 2 29 29 H 1.09004 * 109.46733 * 300.00198 * 15 14 13 30 30 H 1.08992 * 109.47063 * 179.97438 * 15 14 13 31 31 H 1.08992 * 109.47098 * 179.97438 * 16 15 14 32 32 H 1.09000 * 109.46968 * 60.00192 * 16 15 14 33 33 H 1.09000 * 109.46870 * 299.99783 * 17 16 15 34 34 H 1.09004 * 109.47108 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47067 * 180.02562 * 18 17 16 36 36 H 1.08992 * 109.47461 * 59.99782 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 1 2.6532 1.7741 0.8100 5 6 1.6993 2.2697 -1.0342 6 7 0.9428 1.8397 -2.0203 7 14 2.3225 4.0307 -1.0346 8 1 3.8074 4.0302 -1.0350 9 1 1.8270 4.7309 -2.2468 10 1 1.8281 4.7311 0.1780 11 6 2.0400 -0.7213 -1.2491 12 8 3.4690 -0.7218 -1.2488 13 6 2.0400 -0.7211 1.2493 14 6 1.5300 -2.1637 1.2494 15 6 2.0395 -2.8847 2.4990 16 6 1.5291 -2.1632 3.7479 17 6 2.0390 -0.7208 3.7478 18 6 1.5295 0.0003 2.4982 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 0.7082 2.4370 -2.7476 23 1 1.6767 -1.7489 -1.2491 24 1 1.6768 -0.2075 -2.1391 25 1 3.8624 -1.1632 -2.0140 26 1 3.1300 -0.7207 1.2495 27 1 0.4400 -2.1637 1.2493 28 1 1.8933 -2.6776 0.3594 29 1 3.1296 -2.8847 2.4994 30 1 1.6759 -3.9122 2.4992 31 1 1.8917 -2.6772 4.6380 32 1 0.4391 -2.1632 3.7475 33 1 3.1290 -0.7208 3.7482 34 1 1.6750 -0.2066 4.6374 35 1 1.8932 1.0279 2.4980 36 1 0.4396 0.0003 2.4978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:22 Heat of formation + Delta-G solvation = -79.461021 kcal Electronic energy + Delta-G solvation = -15506.999049 eV Core-core repulsion = 13182.947684 eV Total energy + Delta-G solvation = -2324.051365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.62407 -35.73374 -33.63715 -31.40946 -30.12606 -27.84753 -25.24958 -24.56742 -22.16986 -21.62717 -19.48468 -17.83483 -15.99774 -15.70987 -15.19771 -14.28732 -13.65059 -13.54014 -13.42893 -13.22572 -12.59435 -11.74762 -11.57018 -11.52479 -11.35380 -11.02684 -10.81913 -10.72920 -10.55395 -10.31269 -10.14425 -10.02958 -9.91845 -9.47221 -9.16697 -8.84943 -8.51238 -8.38642 -8.11149 -5.85188 -3.90551 3.38484 3.41893 3.46358 4.52523 5.28811 5.38774 5.39359 5.41843 5.72037 5.91035 5.99680 6.13117 6.14818 6.19379 6.27142 6.31839 6.48160 6.62983 6.68946 6.75591 6.80588 6.88948 6.95424 7.05503 7.19890 7.27246 7.31446 7.41379 7.59538 7.80564 7.99008 8.27093 8.57299 8.94675 9.07062 9.71954 11.16184 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.011157 C = 0.009957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.223216 B = 2509.040042 C = 2811.557907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 C -0.477 4.477 4 H 0.054 0.946 5 C 0.060 3.940 6 N -0.898 5.898 7 Si 0.888 3.112 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.084 3.916 12 O -0.564 6.564 13 C -0.064 4.064 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.107 4.107 19 H 0.011 0.989 20 H 0.081 0.919 21 H 0.034 0.966 22 H 0.257 0.743 23 H -0.003 1.003 24 H 0.073 0.927 25 H 0.346 0.654 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -6.601 5.435 8.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.077 3.923 3 C -0.515 4.515 4 H 0.072 0.928 5 C -0.139 4.139 6 N -0.539 5.539 7 Si 0.717 3.283 8 H -0.205 1.205 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.006 3.994 12 O -0.366 6.366 13 C -0.083 4.083 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.145 4.145 19 H 0.030 0.970 20 H 0.100 0.900 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.188 0.812 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.212 -6.186 5.847 8.515 hybrid contribution 0.387 0.654 -0.641 0.994 sum 0.600 -5.532 5.206 7.620 Atomic orbital electron populations 1.21854 0.97722 0.97148 1.02490 1.18082 0.91754 0.93931 0.88506 1.20996 1.29469 0.94742 1.06279 0.92778 1.24873 0.95239 0.98171 0.95612 1.69756 1.37885 1.35323 1.10916 0.86715 0.79231 0.85279 0.77053 1.20483 1.21599 1.20564 1.22505 0.78899 0.94734 1.03230 1.86576 1.21887 1.81164 1.46926 1.21033 0.99555 0.92135 0.95538 1.21723 1.00256 0.97329 0.96131 1.21536 1.00355 0.97909 0.95661 1.21499 1.00332 0.96290 0.97138 1.21600 1.00304 0.95319 0.98595 1.21581 1.00177 0.99556 0.93162 0.97045 0.90048 0.94660 0.93302 0.98502 0.90895 0.81170 0.92150 0.92518 0.92715 0.92619 0.93366 0.93336 0.92544 0.92724 0.93257 0.91435 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.55 37.16 0.28 -2.88 16 2 C 0.08 1.87 0.14 -155.66 -0.02 1.85 16 3 C -0.48 -12.90 6.93 -34.44 -0.24 -13.13 16 4 H 0.05 1.49 6.71 -52.49 -0.35 1.14 16 5 C 0.06 1.64 5.15 -17.82 -0.09 1.55 16 6 N -0.90 -24.89 9.35 55.43 0.52 -24.37 16 7 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.08 1.99 5.34 37.15 0.20 2.19 16 12 O -0.56 -13.01 12.61 -35.23 -0.44 -13.45 16 13 C -0.06 -1.35 1.37 -90.61 -0.12 -1.48 16 14 C -0.12 -2.15 4.50 -26.73 -0.12 -2.27 16 15 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 16 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 17 C -0.12 -1.96 5.92 -26.73 -0.16 -2.11 16 18 C -0.11 -2.10 4.60 -26.73 -0.12 -2.22 16 19 H 0.01 0.23 6.43 -51.93 -0.33 -0.10 16 20 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 21 H 0.03 0.80 6.43 -51.93 -0.33 0.47 16 22 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.00 -0.07 6.43 -51.93 -0.33 -0.40 16 24 H 0.07 1.91 6.07 -51.93 -0.32 1.60 16 25 H 0.35 6.23 9.12 45.56 0.42 6.65 16 26 H 0.06 1.40 7.68 -51.93 -0.40 1.00 16 27 H 0.06 1.04 6.43 -51.93 -0.33 0.71 16 28 H 0.05 1.03 6.43 -51.93 -0.33 0.69 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 36 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 LS Contribution 264.15 15.07 3.98 3.98 Total: -1.00 -28.31 264.15 -6.66 -34.97 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -4.98 Total: 4.57 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -0.72 Total: -22.36 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.52 Total: -24.37 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.44 Total: -13.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.31 -6.66 -34.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.488 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds