Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46885 * 2 1 4 4 C 1.42900 * 113.99661 * 185.40469 * 3 2 1 5 5 C 1.52995 * 109.47470 * 53.88727 * 4 3 2 6 6 C 1.50693 * 109.47145 * 293.88467 * 4 3 2 7 7 H 1.08000 * 120.00125 * 149.44980 * 6 4 3 8 8 C 1.37884 * 120.00250 * 329.44429 * 6 4 3 9 9 N 1.31513 * 120.00210 * 190.18080 * 8 6 4 10 10 Si 1.86794 * 119.99609 * 10.17864 * 8 6 4 11 11 H 1.48502 * 109.47117 * 88.91605 * 10 8 6 12 12 H 1.48502 * 109.47293 * 208.91591 * 10 8 6 13 13 H 1.48499 * 109.47544 * 328.91419 * 10 8 6 14 14 C 1.53004 * 109.46823 * 173.88515 * 4 3 2 15 15 C 1.52997 * 109.47099 * 67.51933 * 14 4 3 16 16 C 1.53784 * 113.61733 * 186.16995 * 15 14 4 17 17 C 1.53782 * 87.17348 * 220.06015 * 16 15 14 18 18 C 1.53783 * 87.08408 * 25.38753 * 17 16 15 19 19 H 1.08999 * 109.46758 * 305.60253 * 1 2 3 20 20 H 1.08992 * 109.47021 * 65.60565 * 1 2 3 21 21 H 1.09000 * 109.46551 * 185.60084 * 1 2 3 22 22 H 1.08996 * 109.47574 * 239.99893 * 2 1 3 23 23 H 1.09001 * 109.47421 * 119.99574 * 2 1 3 24 24 H 1.08997 * 109.47276 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.47368 * 300.00319 * 5 4 3 26 26 H 1.09007 * 109.47392 * 59.99604 * 5 4 3 27 27 H 0.96999 * 119.99849 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.46958 * 307.51910 * 14 4 3 29 29 H 1.09001 * 109.47100 * 187.51520 * 14 4 3 30 30 H 1.09011 * 112.90983 * 317.42049 * 15 14 4 31 31 H 1.09000 * 113.61547 * 105.47056 * 16 15 14 32 32 H 1.09001 * 113.61078 * 334.65139 * 16 15 14 33 33 H 1.08995 * 113.61672 * 139.93864 * 17 16 15 34 34 H 1.08996 * 113.61359 * 270.84110 * 17 16 15 35 35 H 1.08998 * 113.61133 * 89.10759 * 18 17 16 36 36 H 1.08999 * 113.61612 * 219.93665 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4254 1.4621 -0.1230 5 6 3.8941 0.6927 -1.3595 6 6 4.0840 0.8885 1.1051 7 1 5.0604 0.4330 1.0313 8 6 3.4401 0.9454 2.3230 9 7 4.0870 0.6314 3.4241 10 14 1.6490 1.4687 2.4089 11 1 0.7772 0.2761 2.2579 12 1 1.3838 2.1128 3.7204 13 1 1.3621 2.4331 1.3168 14 6 3.8074 2.9369 -0.2649 15 6 3.5091 3.6692 1.0449 16 6 3.7168 5.1907 0.9611 17 6 4.3290 5.1080 2.3694 18 6 4.6783 3.6457 2.0463 19 1 -0.3633 0.5983 0.8356 20 1 -0.3633 0.4244 -0.9359 21 1 -0.3632 -1.0228 0.1003 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 4.9764 0.7806 -1.4535 25 1 3.6219 -0.3579 -1.2585 26 1 3.4177 1.1075 -2.2479 27 1 3.6339 0.6711 4.2809 28 1 3.2288 3.3860 -1.0722 29 1 4.8705 3.0166 -0.4918 30 1 2.5531 3.3826 1.4832 31 1 2.7863 5.7569 0.9221 32 1 4.4285 5.4925 0.1927 33 1 5.2023 5.7461 2.5041 34 1 3.5976 5.2154 3.1704 35 1 5.6532 3.5238 1.5742 36 1 4.5253 2.9649 2.8837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -7.073313 kcal Electronic energy + Delta-G solvation = -15842.624614 eV Core-core repulsion = 13521.712215 eV Total energy + Delta-G solvation = -2320.912399 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.84150 -37.20121 -32.91755 -31.70542 -29.73815 -27.64564 -25.36699 -24.41437 -22.83402 -21.58847 -19.13701 -18.70456 -17.13260 -16.12234 -15.06241 -14.56915 -14.00753 -13.81363 -13.17822 -12.98101 -12.54086 -12.09949 -11.96569 -11.67862 -11.58101 -11.33984 -11.12952 -10.77291 -10.56697 -10.44593 -10.21848 -9.94306 -9.56895 -9.53114 -9.11402 -9.04050 -8.55589 -8.28360 -7.48233 -6.00793 -4.06607 3.47473 3.61311 3.81183 4.63047 4.81823 5.29706 5.49022 5.53320 5.61822 5.71296 5.88898 5.89519 6.09179 6.17806 6.25753 6.28544 6.34554 6.45379 6.46171 6.53476 6.57990 6.62545 6.71597 6.73971 6.75847 6.90777 7.03611 7.25552 7.39755 7.47711 7.55041 7.76197 8.13089 8.67151 8.96642 9.63727 11.07767 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.016315 C = 0.014356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.179065 B = 1715.821435 C = 1949.924929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.038 3.962 3 O -0.374 6.374 4 C 0.195 3.805 5 C -0.161 4.161 6 C -0.538 4.538 7 H 0.073 0.927 8 C 0.079 3.921 9 N -0.894 5.894 10 Si 0.907 3.093 11 H -0.288 1.288 12 H -0.336 1.336 13 H -0.219 1.219 14 C -0.078 4.078 15 C -0.104 4.104 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.114 4.114 19 H 0.058 0.942 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.261 0.739 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 3.674 -5.678 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.038 4.038 3 O -0.296 6.296 4 C 0.157 3.843 5 C -0.219 4.219 6 C -0.576 4.576 7 H 0.092 0.908 8 C -0.124 4.124 9 N -0.531 5.531 10 Si 0.746 3.254 11 H -0.216 1.216 12 H -0.269 1.269 13 H -0.148 1.148 14 C -0.116 4.116 15 C -0.121 4.121 16 C -0.181 4.181 17 C -0.192 4.192 18 C -0.152 4.152 19 H 0.077 0.923 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.395 3.783 -5.495 7.486 hybrid contribution -0.623 -0.106 0.156 0.651 sum -4.018 3.677 -5.339 7.627 Atomic orbital electron populations 1.21987 0.95799 1.01394 1.01947 1.22406 0.93281 0.86831 1.01263 1.88283 1.25104 1.24393 1.91782 1.19678 0.78096 0.92617 0.93860 1.22339 1.00736 1.00657 0.98124 1.21138 1.05377 1.39994 0.91052 0.90844 1.25042 0.99092 0.93179 0.95060 1.70014 1.36777 1.48309 0.97996 0.87332 0.84787 0.79902 0.73340 1.21601 1.26932 1.14757 1.21479 0.99315 0.95128 0.95628 1.22772 1.00523 0.92020 0.96833 1.23003 0.99677 0.98392 0.97061 1.22921 0.99896 0.99638 0.96716 1.22918 0.97748 0.93909 1.00605 0.92301 0.92762 0.92170 0.93610 0.92044 0.92934 0.93014 0.94711 0.93018 0.94393 0.92045 0.88685 0.93024 0.91147 0.92803 0.91395 0.91357 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.52 37.16 0.35 -2.40 16 2 C 0.04 0.80 4.56 37.16 0.17 0.97 16 3 O -0.37 -8.60 5.42 -35.23 -0.19 -8.79 16 4 C 0.20 4.47 0.70 -91.78 -0.06 4.41 16 5 C -0.16 -3.24 8.04 37.15 0.30 -2.94 16 6 C -0.54 -14.32 6.80 -34.44 -0.23 -14.55 16 7 H 0.07 2.16 8.06 -52.49 -0.42 1.73 16 8 C 0.08 2.17 2.85 -17.82 -0.05 2.12 16 9 N -0.89 -26.34 13.33 55.43 0.74 -25.60 16 10 Si 0.91 22.92 19.12 -169.99 -3.25 19.66 16 11 H -0.29 -6.98 4.94 56.52 0.28 -6.70 16 12 H -0.34 -8.95 7.11 56.52 0.40 -8.55 16 13 H -0.22 -5.37 4.11 56.52 0.23 -5.14 16 14 C -0.08 -1.65 4.43 -26.73 -0.12 -1.77 16 15 C -0.10 -2.25 2.51 -89.71 -0.23 -2.47 16 16 C -0.14 -2.60 7.64 -25.92 -0.20 -2.80 16 17 C -0.15 -2.85 8.08 -25.92 -0.21 -3.06 16 18 C -0.11 -2.51 6.09 -25.82 -0.16 -2.67 16 19 H 0.06 1.12 5.70 -51.93 -0.30 0.82 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.88 6.02 -51.93 -0.31 0.57 16 23 H 0.06 1.44 5.34 -51.93 -0.28 1.17 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.05 1.02 6.36 -51.93 -0.33 0.69 16 26 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.25 7.82 -51.93 -0.41 0.85 16 30 H 0.10 2.26 3.02 -51.92 -0.16 2.11 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.48 7.88 -51.93 -0.41 1.07 16 36 H 0.09 2.26 5.82 -51.93 -0.30 1.95 16 LS Contribution 252.80 15.07 3.81 3.81 Total: -1.00 -28.43 252.80 -5.47 -33.90 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.14 Total: 2.18 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -0.44 Total: -25.17 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.74 Total: -25.60 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.19 Total: -8.79 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -3.25 Total: 19.66 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.43 -5.47 -33.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.824 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds