Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42906 * 109.46885 * 2 1 4 4 C 1.42900 * 113.99661 * 185.40469 * 3 2 1 5 5 C 1.52995 * 109.47470 * 53.88727 * 4 3 2 6 6 C 1.50693 * 109.47145 * 293.88467 * 4 3 2 7 7 H 1.08000 * 120.00125 * 149.44980 * 6 4 3 8 8 C 1.37884 * 120.00250 * 329.44429 * 6 4 3 9 9 N 1.31513 * 120.00210 * 190.18080 * 8 6 4 10 10 Si 1.86794 * 119.99609 * 10.17864 * 8 6 4 11 11 H 1.48502 * 109.47117 * 88.91605 * 10 8 6 12 12 H 1.48502 * 109.47293 * 208.91591 * 10 8 6 13 13 H 1.48499 * 109.47544 * 328.91419 * 10 8 6 14 14 C 1.53004 * 109.46823 * 173.88515 * 4 3 2 15 15 C 1.52997 * 109.47099 * 67.51933 * 14 4 3 16 16 C 1.53784 * 113.61733 * 186.16995 * 15 14 4 17 17 C 1.53782 * 87.17348 * 220.06015 * 16 15 14 18 18 C 1.53783 * 87.08408 * 25.38753 * 17 16 15 19 19 H 1.08999 * 109.46758 * 305.60253 * 1 2 3 20 20 H 1.08992 * 109.47021 * 65.60565 * 1 2 3 21 21 H 1.09000 * 109.46551 * 185.60084 * 1 2 3 22 22 H 1.08996 * 109.47574 * 239.99893 * 2 1 3 23 23 H 1.09001 * 109.47421 * 119.99574 * 2 1 3 24 24 H 1.08997 * 109.47276 * 179.97438 * 5 4 3 25 25 H 1.08999 * 109.47368 * 300.00319 * 5 4 3 26 26 H 1.09007 * 109.47392 * 59.99604 * 5 4 3 27 27 H 0.96999 * 119.99849 * 180.02562 * 9 8 6 28 28 H 1.08999 * 109.46958 * 307.51910 * 14 4 3 29 29 H 1.09001 * 109.47100 * 187.51520 * 14 4 3 30 30 H 1.09011 * 112.90983 * 317.42049 * 15 14 4 31 31 H 1.09000 * 113.61547 * 105.47056 * 16 15 14 32 32 H 1.09001 * 113.61078 * 334.65139 * 16 15 14 33 33 H 1.08995 * 113.61672 * 139.93864 * 17 16 15 34 34 H 1.08996 * 113.61359 * 270.84110 * 17 16 15 35 35 H 1.08998 * 113.61133 * 89.10759 * 18 17 16 36 36 H 1.08999 * 113.61612 * 219.93665 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4254 1.4621 -0.1230 5 6 3.8941 0.6927 -1.3595 6 6 4.0840 0.8885 1.1051 7 1 5.0604 0.4330 1.0313 8 6 3.4401 0.9454 2.3230 9 7 4.0870 0.6314 3.4241 10 14 1.6490 1.4687 2.4089 11 1 0.7772 0.2761 2.2579 12 1 1.3838 2.1128 3.7204 13 1 1.3621 2.4331 1.3168 14 6 3.8074 2.9369 -0.2649 15 6 3.5091 3.6692 1.0449 16 6 3.7168 5.1907 0.9611 17 6 4.3290 5.1080 2.3694 18 6 4.6783 3.6457 2.0463 19 1 -0.3633 0.5983 0.8356 20 1 -0.3633 0.4244 -0.9359 21 1 -0.3632 -1.0228 0.1003 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 4.9764 0.7806 -1.4535 25 1 3.6219 -0.3579 -1.2585 26 1 3.4177 1.1075 -2.2479 27 1 3.6339 0.6711 4.2809 28 1 3.2288 3.3860 -1.0722 29 1 4.8705 3.0166 -0.4918 30 1 2.5531 3.3826 1.4832 31 1 2.7863 5.7569 0.9221 32 1 4.4285 5.4925 0.1927 33 1 5.2023 5.7461 2.5041 34 1 3.5976 5.2154 3.1704 35 1 5.6532 3.5238 1.5742 36 1 4.5253 2.9649 2.8837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -25.332493 kcal Electronic energy + Delta-G solvation = -15843.416391 eV Core-core repulsion = 13521.712215 eV Total energy + Delta-G solvation = -2321.704176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56465 -38.85696 -34.77809 -33.64524 -31.33795 -29.26797 -27.37440 -26.05667 -24.43103 -23.17216 -20.95724 -20.36369 -19.12111 -17.94954 -16.73437 -16.33932 -15.74575 -15.45840 -14.98813 -14.88488 -14.28303 -13.76502 -13.54293 -13.30170 -13.14562 -12.94450 -12.73799 -12.45835 -12.30289 -12.15445 -11.94210 -11.77972 -11.43059 -11.27983 -10.77327 -10.67814 -10.55065 -10.25929 -9.32796 -8.19272 -6.25223 1.44522 1.54010 1.77460 2.53536 3.05308 3.28439 3.93836 3.98386 4.07803 4.21125 4.26256 4.40174 4.55574 4.63863 4.66215 4.71192 4.84447 4.87742 4.93492 5.01948 5.04931 5.06534 5.11015 5.16303 5.22912 5.27463 5.39663 5.59236 5.64118 5.75481 5.79087 5.86330 6.08607 6.70514 6.80434 7.49306 8.92661 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.016315 C = 0.014356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.179065 B = 1715.821435 C = 1949.924929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.030 3.970 3 O -0.380 6.380 4 C 0.188 3.812 5 C -0.156 4.156 6 C -0.526 4.526 7 H 0.034 0.966 8 C 0.044 3.956 9 N -0.938 5.938 10 Si 0.948 3.052 11 H -0.275 1.275 12 H -0.362 1.362 13 H -0.200 1.200 14 C -0.076 4.076 15 C -0.117 4.117 16 C -0.124 4.124 17 C -0.145 4.145 18 C -0.126 4.126 19 H 0.044 0.956 20 H 0.078 0.922 21 H 0.084 0.916 22 H 0.065 0.935 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.255 0.745 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 5.040 -8.012 10.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.046 4.046 3 O -0.302 6.302 4 C 0.150 3.850 5 C -0.213 4.213 6 C -0.564 4.564 7 H 0.052 0.948 8 C -0.153 4.153 9 N -0.577 5.577 10 Si 0.786 3.214 11 H -0.202 1.202 12 H -0.298 1.298 13 H -0.127 1.127 14 C -0.114 4.114 15 C -0.135 4.135 16 C -0.162 4.162 17 C -0.182 4.182 18 C -0.163 4.163 19 H 0.063 0.937 20 H 0.097 0.903 21 H 0.103 0.897 22 H 0.084 0.916 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.622 5.141 -7.871 10.476 hybrid contribution -0.147 -0.605 0.873 1.072 sum -4.769 4.536 -6.997 9.607 Atomic orbital electron populations 1.21995 0.93093 1.03047 1.02695 1.22574 0.95543 0.85792 1.00650 1.88209 1.24682 1.25640 1.91659 1.19744 0.78078 0.94107 0.93094 1.22238 1.01098 1.00237 0.97724 1.21280 1.03684 1.38656 0.92776 0.94812 1.25543 1.01801 0.93288 0.94717 1.70137 1.38106 1.51012 0.98478 0.86736 0.81885 0.80396 0.72337 1.20202 1.29843 1.12673 1.21457 1.00020 0.93720 0.96170 1.22780 0.98839 0.95217 0.96650 1.22918 1.00965 0.95359 0.96926 1.22869 1.00818 0.97112 0.97427 1.22867 0.97993 0.95817 0.99662 0.93668 0.90290 0.89733 0.91649 0.95334 0.92727 0.93256 0.91933 0.93608 0.92060 0.91495 0.90971 0.91236 0.88893 0.90350 0.91630 0.91774 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.52 71.98 0.69 -4.22 16 2 C 0.03 1.21 4.56 71.98 0.33 1.53 16 3 O -0.38 -16.60 5.42 -148.98 -0.81 -17.40 16 4 C 0.19 8.31 0.70 -11.54 -0.01 8.31 16 5 C -0.16 -5.87 8.04 71.98 0.58 -5.29 16 6 C -0.53 -28.53 6.80 25.60 0.17 -28.35 16 7 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 8 C 0.04 2.52 2.85 84.66 0.24 2.77 16 9 N -0.94 -57.92 13.33 21.45 0.29 -57.63 16 10 Si 0.95 47.81 19.12 68.60 1.31 49.12 16 11 H -0.27 -13.07 4.94 99.48 0.49 -12.57 16 12 H -0.36 -19.71 7.11 99.48 0.71 -19.00 16 13 H -0.20 -9.43 4.11 99.48 0.41 -9.02 16 14 C -0.08 -3.03 4.43 30.59 0.14 -2.90 16 15 C -0.12 -4.86 2.51 -10.21 -0.03 -4.89 16 16 C -0.12 -4.05 7.64 31.12 0.24 -3.81 16 17 C -0.14 -5.07 8.08 31.12 0.25 -4.82 16 18 C -0.13 -5.52 6.09 31.18 0.19 -5.34 16 19 H 0.04 1.58 5.70 -2.39 -0.01 1.57 16 20 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 21 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 22 H 0.07 2.34 6.02 -2.39 -0.01 2.32 16 23 H 0.03 1.32 5.34 -2.39 -0.01 1.31 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.85 6.36 -2.39 -0.02 1.84 16 26 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.57 7.82 -2.39 -0.02 2.55 16 30 H 0.07 3.35 3.02 -2.38 -0.01 3.34 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.79 7.88 -2.39 -0.02 2.77 16 36 H 0.05 2.43 5.82 -2.39 -0.01 2.42 16 Total: -1.00 -63.06 252.80 4.10 -58.96 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.52 Total: 13.97 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 2.79 Total: -47.01 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.29 Total: -57.63 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.81 Total: -17.40 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.31 Total: 49.12 kcal Total: -63.06 4.10 -58.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.623 kcal (2) G-P(sol) polarization free energy of solvation -63.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds