Wall clock time and date at job start Mon Mar 30 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47054 * 2 1 4 4 C 1.42893 * 114.00288 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47671 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46916 * 300.00407 * 4 3 2 7 7 H 1.08004 * 120.00015 * 125.21073 * 6 4 3 8 8 C 1.37880 * 120.00195 * 305.20639 * 6 4 3 9 9 N 1.31519 * 119.99486 * 6.44985 * 8 6 4 10 10 Si 1.86797 * 120.00050 * 186.44983 * 8 6 4 11 11 H 1.48501 * 109.47243 * 84.99215 * 10 8 6 12 12 H 1.48507 * 109.46766 * 204.98833 * 10 8 6 13 13 H 1.48491 * 109.47366 * 324.98668 * 10 8 6 14 14 C 1.53002 * 109.47127 * 60.00068 * 4 3 2 15 15 C 1.52998 * 109.46797 * 65.00131 * 14 4 3 16 16 C 1.53784 * 113.61389 * 272.49491 * 15 14 4 17 17 C 1.53784 * 87.08173 * 220.01979 * 16 15 14 18 18 C 1.53781 * 87.07960 * 25.43503 * 17 16 15 19 19 H 1.08998 * 109.47159 * 299.99868 * 1 2 3 20 20 H 1.09004 * 109.46830 * 59.99982 * 1 2 3 21 21 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47159 * 240.00132 * 2 1 3 23 23 H 1.08997 * 109.47021 * 120.00312 * 2 1 3 24 24 H 1.08997 * 109.47273 * 186.92382 * 5 4 3 25 25 H 1.09004 * 109.46321 * 306.92246 * 5 4 3 26 26 H 1.09000 * 109.46942 * 66.91468 * 5 4 3 27 27 H 0.97002 * 119.99630 * 179.97438 * 9 8 6 28 28 H 1.09002 * 109.47153 * 185.00746 * 14 4 3 29 29 H 1.09000 * 109.46767 * 305.00200 * 14 4 3 30 30 H 1.09000 * 112.84756 * 43.80926 * 15 14 4 31 31 H 1.08995 * 113.61705 * 334.57628 * 16 15 14 32 32 H 1.09004 * 113.60693 * 105.47456 * 16 15 14 33 33 H 1.08996 * 113.61457 * 270.88728 * 17 16 15 34 34 H 1.09002 * 113.60979 * 139.97759 * 17 16 15 35 35 H 1.08998 * 113.61470 * 220.01529 * 18 17 16 36 36 H 1.09007 * 113.69461 * 89.12301 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 0.0012 6 6 3.9872 0.7918 1.2314 7 1 4.7388 0.0222 1.1349 8 6 3.5367 1.1627 2.4806 9 7 2.5341 2.0062 2.5943 10 14 4.3505 0.4671 4.0114 11 1 5.5413 1.2854 4.3542 12 1 3.3871 0.4974 5.1412 13 1 4.7697 -0.9343 3.7559 14 6 3.9968 0.7813 -1.2483 15 6 3.5313 1.5369 -2.4947 16 6 2.1717 1.0601 -3.0322 17 6 2.7634 1.2161 -4.4431 18 6 4.1452 1.0071 -3.8013 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 4.9048 3.0265 -0.1223 25 1 3.3229 3.4488 -0.8205 26 1 3.5294 3.3931 0.9466 27 1 2.2169 2.2668 3.4732 28 1 5.0859 0.7891 -1.2042 29 1 3.6424 -0.2484 -1.2942 30 1 3.6042 2.6190 -2.3854 31 1 1.9355 0.0291 -2.7693 32 1 1.3536 1.7494 -2.8232 33 1 2.6249 2.2106 -4.8671 34 1 2.4750 0.4187 -5.1281 35 1 4.9202 1.6534 -4.2132 36 1 4.4499 -0.0382 -3.7482 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:13 Heat of formation + Delta-G solvation = -39.419854 kcal Electronic energy + Delta-G solvation = -15410.586220 eV Core-core repulsion = 13088.271170 eV Total energy + Delta-G solvation = -2322.315050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.77837 -36.48409 -32.82084 -31.31770 -29.23283 -26.89030 -25.33943 -25.08053 -22.66738 -21.46199 -19.34956 -18.41709 -16.64097 -15.31744 -14.63219 -14.23895 -14.04808 -13.94210 -13.18473 -12.85562 -12.28741 -11.94349 -11.79212 -11.66211 -11.08528 -11.02152 -10.91337 -10.71083 -10.63182 -10.49748 -10.22901 -10.14994 -9.98634 -9.78597 -9.42324 -9.06171 -8.55395 -8.41696 -7.57095 -5.87991 -4.05883 3.31047 3.38177 3.40472 4.44762 5.14149 5.18216 5.25439 5.26921 5.45924 5.56861 5.98452 6.07184 6.12742 6.20898 6.23013 6.29305 6.45220 6.47884 6.51993 6.58933 6.66878 6.74425 6.87504 6.91953 7.01263 7.07828 7.20059 7.26530 7.29841 7.55291 7.84548 8.07489 8.35262 8.89550 9.27926 9.66560 11.11159 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036643 B = 0.010698 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.936113 B = 2616.721198 C = 2978.146229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 O -0.361 6.361 4 C 0.239 3.761 5 C -0.117 4.117 6 C -0.556 4.556 7 H 0.052 0.948 8 C 0.082 3.918 9 N -0.849 5.849 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.128 4.128 15 C -0.101 4.101 16 C -0.124 4.124 17 C -0.147 4.147 18 C -0.143 4.143 19 H 0.057 0.943 20 H 0.045 0.955 21 H 0.047 0.953 22 H 0.019 0.981 23 H 0.045 0.955 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.071 0.929 27 H 0.257 0.743 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -1.798 -8.387 8.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 O -0.280 6.280 4 C 0.201 3.799 5 C -0.175 4.175 6 C -0.594 4.594 7 H 0.070 0.930 8 C -0.124 4.124 9 N -0.484 5.484 10 Si 0.705 3.295 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.201 1.201 14 C -0.165 4.165 15 C -0.119 4.119 16 C -0.161 4.161 17 C -0.184 4.184 18 C -0.181 4.181 19 H 0.076 0.924 20 H 0.065 0.935 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.701 -1.526 -8.258 8.427 hybrid contribution 0.673 -0.681 0.981 1.371 sum -0.027 -2.207 -7.277 7.604 Atomic orbital electron populations 1.21695 0.96947 0.99769 1.01738 1.21857 0.92108 0.87608 0.98432 1.87833 1.22895 1.22865 1.94421 1.18900 0.78955 0.92291 0.89771 1.21579 0.97644 0.97161 1.01107 1.21500 1.24215 1.22399 0.91302 0.92987 1.24964 0.94186 0.94737 0.98498 1.70119 1.23322 1.32098 1.22885 0.86868 0.79514 0.79625 0.83462 1.20597 1.21337 1.20090 1.22190 0.99842 0.98928 0.95581 1.22552 0.95416 1.00400 0.93520 1.22860 0.97692 1.01307 0.94284 1.22857 0.97606 1.00820 0.97162 1.22995 0.96130 1.00851 0.98087 0.92426 0.93537 0.93414 0.96334 0.93682 0.94447 0.95840 0.91033 0.93345 0.92867 0.93031 0.89384 0.90708 0.91788 0.90928 0.92515 0.92509 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 10.28 37.16 0.38 -2.37 16 2 C 0.08 1.73 5.58 37.16 0.21 1.94 16 3 O -0.36 -9.01 8.16 -35.23 -0.29 -9.30 16 4 C 0.24 5.84 0.41 -91.77 -0.04 5.80 16 5 C -0.12 -2.80 8.12 37.16 0.30 -2.50 16 6 C -0.56 -14.98 6.75 -34.44 -0.23 -15.21 16 7 H 0.05 1.41 7.76 -52.48 -0.41 1.00 16 8 C 0.08 2.24 5.09 -17.82 -0.09 2.15 16 9 N -0.85 -24.01 11.19 55.43 0.62 -23.39 16 10 Si 0.88 21.08 29.54 -169.99 -5.02 16.06 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C -0.13 -2.67 3.88 -26.73 -0.10 -2.78 16 15 C -0.10 -1.81 3.32 -89.80 -0.30 -2.11 16 16 C -0.12 -2.08 6.41 -25.92 -0.17 -2.25 16 17 C -0.15 -2.07 8.08 -25.92 -0.21 -2.28 16 18 C -0.14 -2.16 7.64 -25.92 -0.20 -2.35 16 19 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.02 0.39 4.55 -51.93 -0.24 0.15 16 23 H 0.04 1.12 7.10 -51.93 -0.37 0.75 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.51 6.45 -51.93 -0.34 0.17 16 26 H 0.07 1.90 6.62 -51.93 -0.34 1.55 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.09 6.01 -51.93 -0.31 0.77 16 30 H 0.09 1.65 5.98 -51.93 -0.31 1.34 16 31 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 276.38 15.07 4.16 4.16 Total: -1.00 -27.93 276.38 -6.98 -34.91 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.01 Total: -0.46 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -0.45 Total: -21.98 kcal Atomic # 7 Polarization: -24.01 SS G_CDS: 0.62 Total: -23.39 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.29 Total: -9.30 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.93 -6.98 -34.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.508 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds