Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.47054 * 2 1 4 4 C 1.42893 * 114.00288 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47671 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46916 * 300.00407 * 4 3 2 7 7 H 1.08004 * 120.00015 * 125.21073 * 6 4 3 8 8 C 1.37880 * 120.00195 * 305.20639 * 6 4 3 9 9 N 1.31519 * 119.99486 * 6.44985 * 8 6 4 10 10 Si 1.86797 * 120.00050 * 186.44983 * 8 6 4 11 11 H 1.48501 * 109.47243 * 84.99215 * 10 8 6 12 12 H 1.48507 * 109.46766 * 204.98833 * 10 8 6 13 13 H 1.48491 * 109.47366 * 324.98668 * 10 8 6 14 14 C 1.53002 * 109.47127 * 60.00068 * 4 3 2 15 15 C 1.52998 * 109.46797 * 65.00131 * 14 4 3 16 16 C 1.53784 * 113.61389 * 272.49491 * 15 14 4 17 17 C 1.53784 * 87.08173 * 220.01979 * 16 15 14 18 18 C 1.53781 * 87.07960 * 25.43503 * 17 16 15 19 19 H 1.08998 * 109.47159 * 299.99868 * 1 2 3 20 20 H 1.09004 * 109.46830 * 59.99982 * 1 2 3 21 21 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47159 * 240.00132 * 2 1 3 23 23 H 1.08997 * 109.47021 * 120.00312 * 2 1 3 24 24 H 1.08997 * 109.47273 * 186.92382 * 5 4 3 25 25 H 1.09004 * 109.46321 * 306.92246 * 5 4 3 26 26 H 1.09000 * 109.46942 * 66.91468 * 5 4 3 27 27 H 0.97002 * 119.99630 * 179.97438 * 9 8 6 28 28 H 1.09002 * 109.47153 * 185.00746 * 14 4 3 29 29 H 1.09000 * 109.46767 * 305.00200 * 14 4 3 30 30 H 1.09000 * 112.84756 * 43.80926 * 15 14 4 31 31 H 1.08995 * 113.61705 * 334.57628 * 16 15 14 32 32 H 1.09004 * 113.60693 * 105.47456 * 16 15 14 33 33 H 1.08996 * 113.61457 * 270.88728 * 17 16 15 34 34 H 1.09002 * 113.60979 * 139.97759 * 17 16 15 35 35 H 1.08998 * 113.61470 * 220.01529 * 18 17 16 36 36 H 1.09007 * 113.69461 * 89.12301 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9385 0.0012 6 6 3.9872 0.7918 1.2314 7 1 4.7388 0.0222 1.1349 8 6 3.5367 1.1627 2.4806 9 7 2.5341 2.0062 2.5943 10 14 4.3505 0.4671 4.0114 11 1 5.5413 1.2854 4.3542 12 1 3.3871 0.4974 5.1412 13 1 4.7697 -0.9343 3.7559 14 6 3.9968 0.7813 -1.2483 15 6 3.5313 1.5369 -2.4947 16 6 2.1717 1.0601 -3.0322 17 6 2.7634 1.2161 -4.4431 18 6 4.1452 1.0071 -3.8013 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 4.9048 3.0265 -0.1223 25 1 3.3229 3.4488 -0.8205 26 1 3.5294 3.3931 0.9466 27 1 2.2169 2.2668 3.4732 28 1 5.0859 0.7891 -1.2042 29 1 3.6424 -0.2484 -1.2942 30 1 3.6042 2.6190 -2.3854 31 1 1.9355 0.0291 -2.7693 32 1 1.3536 1.7494 -2.8232 33 1 2.6249 2.2106 -4.8671 34 1 2.4750 0.4187 -5.1281 35 1 4.9202 1.6534 -4.2132 36 1 4.4499 -0.0382 -3.7482 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = -54.200178 kcal Electronic energy + Delta-G solvation = -15411.227143 eV Core-core repulsion = 13088.271170 eV Total energy + Delta-G solvation = -2322.955973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27759 -38.15766 -34.76597 -33.20762 -30.92890 -28.59291 -27.36958 -26.33294 -24.20398 -23.19502 -20.98302 -19.90831 -18.63194 -16.90948 -16.54915 -15.95000 -15.73776 -15.42041 -14.92413 -14.62457 -13.83384 -13.49260 -13.34114 -13.18650 -12.89206 -12.84170 -12.57046 -12.43801 -12.39120 -12.20808 -12.06474 -11.92409 -11.58642 -11.17711 -10.81154 -10.70944 -10.52519 -10.42415 -9.46692 -7.96044 -6.19804 1.38329 1.40718 1.47803 2.43651 3.20291 3.67133 3.92477 3.94707 4.00673 4.16593 4.46145 4.60845 4.75310 4.80125 4.82643 4.86924 4.93007 4.98381 5.03412 5.08231 5.12173 5.16974 5.24025 5.33938 5.37653 5.46067 5.48107 5.53895 5.67603 5.73890 5.79333 6.14081 6.31138 6.83422 7.33583 7.59890 9.01257 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.036643 B = 0.010698 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.936113 B = 2616.721198 C = 2978.146229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 O -0.378 6.378 4 C 0.228 3.772 5 C -0.110 4.110 6 C -0.568 4.568 7 H 0.042 0.958 8 C 0.040 3.960 9 N -0.875 5.875 10 Si 0.933 3.067 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.134 4.134 19 H 0.038 0.962 20 H 0.059 0.941 21 H 0.078 0.922 22 H 0.034 0.966 23 H 0.012 0.988 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.255 0.745 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -2.390 -9.870 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 O -0.297 6.297 4 C 0.190 3.810 5 C -0.167 4.167 6 C -0.607 4.607 7 H 0.061 0.939 8 C -0.163 4.163 9 N -0.511 5.511 10 Si 0.759 3.241 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.198 1.198 14 C -0.155 4.155 15 C -0.128 4.128 16 C -0.165 4.165 17 C -0.168 4.168 18 C -0.172 4.172 19 H 0.057 0.943 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.052 0.948 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.580 -2.125 -9.747 9.993 hybrid contribution 0.640 -0.512 1.446 1.662 sum 0.060 -2.637 -8.301 8.710 Atomic orbital electron populations 1.21647 0.94440 1.01754 1.01423 1.21939 0.94136 0.86403 0.97490 1.87797 1.23086 1.24342 1.94491 1.19014 0.79000 0.92502 0.90501 1.21484 0.98311 0.97084 0.99870 1.21805 1.23897 1.22170 0.92780 0.93922 1.25568 0.94649 0.95132 1.00982 1.70236 1.24439 1.33266 1.23178 0.85993 0.78670 0.79031 0.80396 1.20131 1.21202 1.19825 1.22012 0.99319 0.98601 0.95563 1.22551 0.97148 0.99582 0.93519 1.22847 0.96617 1.00589 0.96429 1.22792 0.95938 1.02281 0.95804 1.22948 0.97156 1.01202 0.95869 0.94323 0.92161 0.90313 0.94792 0.97004 0.93519 0.94432 0.94159 0.93606 0.93255 0.93578 0.90237 0.91170 0.92943 0.89704 0.90544 0.91066 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 10.28 71.98 0.74 -4.28 16 2 C 0.08 3.45 5.58 71.98 0.40 3.86 16 3 O -0.38 -18.98 8.16 -148.98 -1.22 -20.19 16 4 C 0.23 11.20 0.41 -11.54 0.00 11.19 16 5 C -0.11 -5.29 8.12 71.98 0.58 -4.70 16 6 C -0.57 -31.00 6.75 25.60 0.17 -30.83 16 7 H 0.04 2.34 7.76 -2.91 -0.02 2.32 16 8 C 0.04 2.21 5.09 84.65 0.43 2.64 16 9 N -0.87 -50.43 11.19 21.45 0.24 -50.19 16 10 Si 0.93 43.71 29.54 68.60 2.03 45.74 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 14 C -0.12 -4.83 3.88 30.59 0.12 -4.71 16 15 C -0.11 -3.77 3.32 -10.27 -0.03 -3.81 16 16 C -0.13 -4.02 6.41 31.12 0.20 -3.82 16 17 C -0.13 -3.23 8.08 31.12 0.25 -2.98 16 18 C -0.13 -3.64 7.64 31.12 0.24 -3.40 16 19 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 21 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 22 H 0.03 1.40 4.55 -2.39 -0.01 1.39 16 23 H 0.01 0.59 7.10 -2.39 -0.02 0.58 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.04 1.64 6.45 -2.39 -0.02 1.63 16 26 H 0.04 2.16 6.62 -2.39 -0.02 2.14 16 27 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 1.91 6.01 -2.39 -0.01 1.90 16 30 H 0.08 2.87 5.98 -2.39 -0.01 2.85 16 31 H 0.07 2.26 6.43 -2.39 -0.02 2.24 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.05 8.10 -2.38 -0.02 2.03 16 Total: -1.00 -59.62 276.38 5.18 -54.44 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.03 Total: 11.05 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 3.10 Total: -40.85 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.24 Total: -50.19 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.22 Total: -20.19 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -59.62 5.18 -54.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.235 kcal (2) G-P(sol) polarization free energy of solvation -59.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds