Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 H 1.09003 * 109.47271 * 34.29071 * 3 2 1 5 5 C 1.50702 * 109.47170 * 274.29292 * 3 2 1 6 6 H 1.08000 * 120.00138 * 294.72833 * 5 3 2 7 7 C 1.37881 * 120.00135 * 114.72440 * 5 3 2 8 8 N 1.31516 * 120.00009 * 5.17694 * 7 5 3 9 9 Si 1.86800 * 120.00265 * 185.18083 * 7 5 3 10 10 H 1.48503 * 109.47164 * 89.99815 * 9 7 5 11 11 H 1.48497 * 109.47369 * 209.99944 * 9 7 5 12 12 H 1.48504 * 109.46584 * 330.00083 * 9 7 5 13 13 C 1.52997 * 109.47463 * 154.29554 * 3 2 1 14 14 C 1.54251 * 109.62489 * 299.99991 * 13 3 2 15 15 C 1.45537 * 112.40303 * 160.10902 * 14 13 3 16 16 C 1.54241 * 112.40766 * 61.93768 * 15 14 13 17 17 C 1.50472 * 108.68111 * 279.90800 * 16 15 14 18 18 C 1.54265 * 112.38502 * 93.93889 * 17 16 15 19 19 C 1.50473 * 109.78932 * 180.87271 * 13 3 2 20 20 H 1.09003 * 109.47102 * 295.12656 * 1 2 3 21 21 H 1.09001 * 109.47572 * 55.13112 * 1 2 3 22 22 H 1.09004 * 109.47101 * 175.12988 * 1 2 3 23 23 H 0.96996 * 120.00387 * 179.97438 * 8 7 5 24 24 H 1.08995 * 109.62853 * 60.38111 * 13 3 2 25 25 H 1.08998 * 108.89198 * 39.35108 * 14 13 3 26 26 H 1.09004 * 108.89205 * 280.86490 * 14 13 3 27 27 H 1.09002 * 108.89914 * 301.17994 * 15 14 13 28 28 H 1.09008 * 108.81344 * 182.63828 * 15 14 13 29 29 H 1.08994 * 109.62769 * 39.71826 * 16 15 14 30 30 H 1.09006 * 109.62646 * 160.10289 * 16 15 14 31 31 H 1.08998 * 108.87976 * 215.02874 * 17 16 15 32 32 H 1.08999 * 108.87755 * 333.47649 * 17 16 15 33 33 H 1.08998 * 108.83114 * 197.61744 * 18 17 16 34 34 H 1.08995 * 108.66213 * 79.41578 * 18 17 16 35 35 H 1.08993 * 108.87605 * 334.72982 * 19 13 3 36 36 H 1.08999 * 108.87755 * 93.17625 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3823 1.9827 0.5790 5 6 2.1173 1.8076 -1.4168 6 1 2.7707 1.3100 -2.1182 7 6 1.3812 2.9023 -1.8178 8 7 0.6644 3.5700 -0.9403 9 14 1.4019 3.4372 -3.6075 10 1 0.3122 2.7467 -4.3431 11 1 1.1997 4.9061 -3.6876 12 1 2.7103 3.0837 -4.2146 13 6 3.4050 1.2428 0.6256 14 6 3.2995 0.7291 2.0763 15 6 4.5645 0.2093 2.5740 16 6 5.6676 1.2866 2.6145 17 6 6.2311 1.4517 1.2290 18 6 5.5423 2.5888 0.4464 19 6 4.0152 2.6180 0.6487 20 1 -0.3633 0.4364 0.9304 21 1 -0.3634 0.5875 -0.8431 22 1 -0.3633 -1.0240 -0.0872 23 1 0.1468 4.3403 -1.2222 24 1 4.0371 0.5714 0.0446 25 1 2.5519 -0.0631 2.1167 26 1 2.9775 1.5489 2.7184 27 1 4.8904 -0.6054 1.9274 28 1 4.4131 -0.1789 3.5813 29 1 5.2438 2.2321 2.9525 30 1 6.4587 0.9752 3.2968 31 1 7.2975 1.6641 1.3050 32 1 6.0973 0.5194 0.6805 33 1 5.7539 2.4634 -0.6155 34 1 5.9588 3.5408 0.7755 35 1 3.5659 3.2165 -0.1437 36 1 3.7956 3.0853 1.6086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -79.241738 kcal Electronic energy + Delta-G solvation = -15265.293904 eV Core-core repulsion = 12941.252048 eV Total energy + Delta-G solvation = -2324.041856 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.53426 -36.10909 -32.85018 -31.78094 -31.47258 -27.22070 -25.28228 -24.04775 -23.75298 -21.08027 -19.73847 -18.27416 -16.53749 -15.25559 -15.09712 -14.31657 -13.98443 -13.92948 -13.53647 -13.28841 -13.11148 -12.31599 -11.98186 -11.67068 -11.38267 -11.20276 -11.03472 -10.93569 -10.42117 -10.18429 -10.13602 -9.94290 -9.82228 -9.61932 -9.48605 -9.27720 -8.72062 -8.59512 -7.94341 -6.06713 -4.15335 3.26883 3.34165 3.38222 4.38282 5.07290 5.16895 5.28586 5.37374 5.51973 5.82030 5.86356 5.94347 6.02529 6.17376 6.22349 6.32232 6.45579 6.48759 6.57859 6.64621 6.68692 6.74031 6.74955 6.86891 6.90302 6.98942 7.16807 7.20281 7.38608 7.66522 7.68179 7.83942 8.36425 8.66188 9.12883 9.53457 10.96902 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.011371 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.695466 B = 2461.783814 C = 3075.916200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.414 6.414 3 C 0.192 3.808 4 H 0.057 0.943 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 C -0.059 4.059 14 C -0.119 4.119 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.104 4.104 20 H 0.017 0.983 21 H 0.040 0.960 22 H 0.052 0.948 23 H 0.263 0.737 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -2.633 4.937 8.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.334 6.334 3 C 0.137 3.863 4 H 0.075 0.925 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.078 4.078 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.141 4.141 20 H 0.036 0.964 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.875 -2.638 4.961 8.129 hybrid contribution -0.301 0.626 -1.038 1.249 sum 5.574 -2.012 3.924 7.107 Atomic orbital electron populations 1.22224 0.83825 0.98980 0.99153 1.87675 1.17522 1.33098 1.95154 1.20123 0.90078 0.80723 0.95362 0.92544 1.21504 1.25138 1.12324 0.97110 0.92647 1.25037 0.94773 0.96136 0.97329 1.69894 1.30263 1.19392 1.33470 0.86660 0.78670 0.77577 0.85541 1.20589 1.21213 1.19691 1.20772 0.97974 0.95909 0.93114 1.20579 0.96783 1.00623 0.97661 1.20463 0.96262 0.98009 0.99900 1.21322 0.97648 0.99566 0.96746 1.21361 0.98218 0.99760 0.96061 1.21921 0.96635 0.96964 0.99454 1.21237 0.92880 0.98008 1.01966 0.96414 0.94178 0.92957 0.92707 0.92425 0.92104 0.93416 0.92654 0.93602 0.91825 0.93118 0.93486 0.92291 0.92670 0.93527 0.89420 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.23 10.79 101.05 1.09 2.32 16 2 O -0.41 -10.33 9.42 -35.23 -0.33 -10.67 16 3 C 0.19 4.89 1.98 -27.88 -0.06 4.83 16 4 H 0.06 1.57 6.67 -51.93 -0.35 1.23 16 5 C -0.52 -14.28 7.00 -34.44 -0.24 -14.52 16 6 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 7 C 0.07 1.89 5.32 -17.82 -0.09 1.80 16 8 N -0.89 -24.95 12.62 55.43 0.70 -24.25 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C -0.06 -1.28 1.64 -91.23 -0.15 -1.43 16 14 C -0.12 -2.25 4.66 -29.59 -0.14 -2.39 16 15 C -0.11 -1.73 5.26 -29.60 -0.16 -1.88 16 16 C -0.12 -1.69 5.59 -27.34 -0.15 -1.84 16 17 C -0.12 -1.77 5.34 -27.33 -0.15 -1.92 16 18 C -0.11 -1.93 5.85 -25.51 -0.15 -2.08 16 19 C -0.10 -2.13 4.75 -27.43 -0.13 -2.27 16 20 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.04 0.96 7.97 -51.93 -0.41 0.55 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.06 1.29 6.99 -51.93 -0.36 0.93 16 25 H 0.06 1.21 7.19 -51.93 -0.37 0.84 16 26 H 0.05 0.90 7.47 -51.93 -0.39 0.51 16 27 H 0.05 0.88 7.48 -51.93 -0.39 0.49 16 28 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.96 6.98 -51.93 -0.36 0.60 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.93 6.65 -51.93 -0.35 0.59 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 2.10 6.44 -51.93 -0.33 1.77 16 36 H 0.04 0.84 6.63 -51.93 -0.34 0.49 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -27.80 274.69 -7.00 -34.80 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.16 Total: -0.75 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.32 Total: -19.38 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.70 Total: -24.25 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.33 Total: -10.67 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.80 -7.00 -34.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.446 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds