Wall clock time and date at job start Mon Mar 30 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 H 1.09003 * 109.47271 * 34.29071 * 3 2 1 5 5 C 1.50702 * 109.47170 * 274.29292 * 3 2 1 6 6 H 1.08000 * 120.00138 * 294.72833 * 5 3 2 7 7 C 1.37881 * 120.00135 * 114.72440 * 5 3 2 8 8 N 1.31516 * 120.00009 * 5.17694 * 7 5 3 9 9 Si 1.86800 * 120.00265 * 185.18083 * 7 5 3 10 10 H 1.48503 * 109.47164 * 89.99815 * 9 7 5 11 11 H 1.48497 * 109.47369 * 209.99944 * 9 7 5 12 12 H 1.48504 * 109.46584 * 330.00083 * 9 7 5 13 13 C 1.52997 * 109.47463 * 154.29554 * 3 2 1 14 14 C 1.54251 * 109.62489 * 299.99991 * 13 3 2 15 15 C 1.45537 * 112.40303 * 160.10902 * 14 13 3 16 16 C 1.54241 * 112.40766 * 61.93768 * 15 14 13 17 17 C 1.50472 * 108.68111 * 279.90800 * 16 15 14 18 18 C 1.54265 * 112.38502 * 93.93889 * 17 16 15 19 19 C 1.50473 * 109.78932 * 180.87271 * 13 3 2 20 20 H 1.09003 * 109.47102 * 295.12656 * 1 2 3 21 21 H 1.09001 * 109.47572 * 55.13112 * 1 2 3 22 22 H 1.09004 * 109.47101 * 175.12988 * 1 2 3 23 23 H 0.96996 * 120.00387 * 179.97438 * 8 7 5 24 24 H 1.08995 * 109.62853 * 60.38111 * 13 3 2 25 25 H 1.08998 * 108.89198 * 39.35108 * 14 13 3 26 26 H 1.09004 * 108.89205 * 280.86490 * 14 13 3 27 27 H 1.09002 * 108.89914 * 301.17994 * 15 14 13 28 28 H 1.09008 * 108.81344 * 182.63828 * 15 14 13 29 29 H 1.08994 * 109.62769 * 39.71826 * 16 15 14 30 30 H 1.09006 * 109.62646 * 160.10289 * 16 15 14 31 31 H 1.08998 * 108.87976 * 215.02874 * 17 16 15 32 32 H 1.08999 * 108.87755 * 333.47649 * 17 16 15 33 33 H 1.08998 * 108.83114 * 197.61744 * 18 17 16 34 34 H 1.08995 * 108.66213 * 79.41578 * 18 17 16 35 35 H 1.08993 * 108.87605 * 334.72982 * 19 13 3 36 36 H 1.08999 * 108.87755 * 93.17625 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3823 1.9827 0.5790 5 6 2.1173 1.8076 -1.4168 6 1 2.7707 1.3100 -2.1182 7 6 1.3812 2.9023 -1.8178 8 7 0.6644 3.5700 -0.9403 9 14 1.4019 3.4372 -3.6075 10 1 0.3122 2.7467 -4.3431 11 1 1.1997 4.9061 -3.6876 12 1 2.7103 3.0837 -4.2146 13 6 3.4050 1.2428 0.6256 14 6 3.2995 0.7291 2.0763 15 6 4.5645 0.2093 2.5740 16 6 5.6676 1.2866 2.6145 17 6 6.2311 1.4517 1.2290 18 6 5.5423 2.5888 0.4464 19 6 4.0152 2.6180 0.6487 20 1 -0.3633 0.4364 0.9304 21 1 -0.3634 0.5875 -0.8431 22 1 -0.3633 -1.0240 -0.0872 23 1 0.1468 4.3403 -1.2222 24 1 4.0371 0.5714 0.0446 25 1 2.5519 -0.0631 2.1167 26 1 2.9775 1.5489 2.7184 27 1 4.8904 -0.6054 1.9274 28 1 4.4131 -0.1789 3.5813 29 1 5.2438 2.2321 2.9525 30 1 6.4587 0.9752 3.2968 31 1 7.2975 1.6641 1.3050 32 1 6.0973 0.5194 0.6805 33 1 5.7539 2.4634 -0.6155 34 1 5.9588 3.5408 0.7755 35 1 3.5659 3.2165 -0.1437 36 1 3.7956 3.0853 1.6086 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272711.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:41 Heat of formation + Delta-G solvation = -94.482399 kcal Electronic energy + Delta-G solvation = -15265.954789 eV Core-core repulsion = 12941.252048 eV Total energy + Delta-G solvation = -2324.702741 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.11275 -37.91474 -34.84003 -33.24348 -33.10053 -29.06827 -27.21211 -25.71694 -25.19183 -22.87032 -21.18120 -19.82854 -18.63871 -17.09483 -16.76931 -16.14955 -15.67555 -15.40556 -15.23101 -14.89803 -14.63353 -13.88355 -13.72378 -13.34997 -12.96435 -12.85110 -12.76568 -12.73501 -12.32732 -11.88772 -11.69839 -11.44677 -11.23069 -11.21058 -11.04005 -10.90121 -10.68914 -10.60708 -9.94467 -8.16497 -6.32104 1.35851 1.37919 1.47779 2.37683 3.02019 3.53060 3.87745 3.97688 4.20062 4.44811 4.45946 4.50837 4.65095 4.66865 4.68187 4.75388 4.91711 4.98096 5.00879 5.03224 5.15971 5.25656 5.34470 5.40467 5.48351 5.50492 5.53712 5.61198 5.65882 5.69952 5.82501 5.92341 6.29229 6.60406 7.05158 7.40371 8.86404 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.011371 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.695466 B = 2461.783814 C = 3075.916200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.425 6.425 3 C 0.194 3.806 4 H 0.026 0.974 5 C -0.537 4.537 6 H 0.042 0.958 7 C 0.030 3.970 8 N -0.916 5.916 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.269 1.269 13 C -0.055 4.055 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.097 4.097 20 H 0.022 0.978 21 H 0.014 0.986 22 H 0.090 0.910 23 H 0.265 0.735 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -3.055 5.495 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.345 6.345 3 C 0.138 3.862 4 H 0.044 0.956 5 C -0.576 4.576 6 H 0.060 0.940 7 C -0.171 4.171 8 N -0.556 5.556 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.193 1.193 13 C -0.074 4.074 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.135 4.135 20 H 0.041 0.959 21 H 0.033 0.967 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.222 -3.067 5.520 9.593 hybrid contribution -0.784 0.737 -1.202 1.613 sum 6.438 -2.330 4.318 8.094 Atomic orbital electron populations 1.22339 0.82531 1.00959 0.98299 1.87647 1.19011 1.32738 1.95137 1.20076 0.91472 0.80252 0.94365 0.95554 1.21641 1.25233 1.12735 0.97947 0.94002 1.25673 0.94345 0.96089 1.00954 1.69993 1.30794 1.19712 1.35059 0.85760 0.78711 0.77463 0.81020 1.20204 1.20419 1.19311 1.20694 0.95475 0.96522 0.94687 1.20480 0.98517 1.00015 0.95594 1.20440 0.94915 0.98384 1.00912 1.21320 0.97902 0.98847 0.96878 1.21349 0.99584 0.98194 0.95949 1.21880 0.94081 0.99134 0.99574 1.21127 0.95332 0.96570 1.00431 0.95896 0.96740 0.89165 0.92575 0.93375 0.93442 0.93664 0.92697 0.91342 0.92322 0.90102 0.90722 0.93123 0.93583 0.91783 0.93455 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.48 10.79 113.37 1.22 3.70 16 2 O -0.43 -21.47 9.42 -148.98 -1.40 -22.87 16 3 C 0.19 10.13 1.98 29.85 0.06 10.19 16 4 H 0.03 1.53 6.67 -2.39 -0.02 1.51 16 5 C -0.54 -30.19 7.00 25.60 0.18 -30.01 16 6 H 0.04 2.41 7.82 -2.91 -0.02 2.38 16 7 C 0.03 1.63 5.32 84.66 0.45 2.08 16 8 N -0.92 -52.50 12.62 21.45 0.27 -52.23 16 9 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 C -0.05 -2.41 1.64 -11.19 -0.02 -2.43 16 14 C -0.11 -4.04 4.66 28.74 0.13 -3.91 16 15 C -0.11 -3.20 5.26 28.74 0.15 -3.05 16 16 C -0.11 -2.91 5.59 30.20 0.17 -2.74 16 17 C -0.11 -3.13 5.34 30.21 0.16 -2.97 16 18 C -0.11 -3.63 5.85 31.39 0.18 -3.45 16 19 C -0.10 -4.04 4.75 30.14 0.14 -3.90 16 20 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 22 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 23 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.05 2.18 6.99 -2.39 -0.02 2.16 16 25 H 0.05 1.87 7.19 -2.39 -0.02 1.85 16 26 H 0.04 1.68 7.47 -2.38 -0.02 1.66 16 27 H 0.05 1.63 7.48 -2.39 -0.02 1.61 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 29 H 0.06 1.60 6.98 -2.39 -0.02 1.59 16 30 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.49 6.65 -2.39 -0.02 1.48 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.05 2.34 6.44 -2.39 -0.02 2.33 16 36 H 0.04 1.77 6.63 -2.39 -0.02 1.75 16 Total: -1.00 -60.39 274.69 4.75 -55.64 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.02 Total: 10.12 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 2.84 Total: -36.49 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.27 Total: -52.23 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -1.40 Total: -22.87 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -60.39 4.75 -55.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272711.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.846 kcal (2) G-P(sol) polarization free energy of solvation -60.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds