Wall clock time and date at job start Mon Mar 30 2020 02:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99980 * 2 1 4 4 H 1.09005 * 109.46959 * 4.52551 * 3 2 1 5 5 C 1.50697 * 109.47487 * 124.52832 * 3 2 1 6 6 H 1.07997 * 120.00156 * 119.99922 * 5 3 2 7 7 C 1.37877 * 119.99905 * 299.99990 * 5 3 2 8 8 N 1.31520 * 120.00159 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47028 * 60.00166 * 9 7 5 11 11 H 1.48502 * 109.47372 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47264 * 300.00096 * 9 7 5 13 13 C 1.53005 * 109.47029 * 244.52884 * 3 2 1 14 14 C 1.54247 * 108.89503 * 177.40613 * 13 3 2 15 15 C 1.50472 * 108.52368 * 159.26239 * 14 13 3 16 16 C 1.54068 * 112.49754 * 94.14886 * 15 14 13 17 17 C 1.54068 * 112.81975 * 318.28444 * 16 15 14 18 18 C 1.50474 * 112.49504 * 318.28619 * 17 16 15 19 19 C 1.45545 * 108.89300 * 54.52353 * 13 3 2 20 20 H 1.08998 * 109.46972 * 184.94733 * 1 2 3 21 21 H 1.08997 * 109.47390 * 304.95287 * 1 2 3 22 22 H 1.09005 * 109.46899 * 64.95293 * 1 2 3 23 23 H 0.96998 * 120.00232 * 180.02562 * 8 7 5 24 24 H 1.09003 * 108.87260 * 295.92060 * 13 3 2 25 25 H 1.08997 * 109.62659 * 278.97231 * 14 13 3 26 26 H 1.08998 * 109.62640 * 39.55547 * 14 13 3 27 27 H 1.09004 * 108.87345 * 333.37602 * 15 14 13 28 28 H 1.08990 * 108.87831 * 214.93042 * 15 14 13 29 29 H 1.08999 * 108.81487 * 197.42073 * 16 15 14 30 30 H 1.09006 * 108.72534 * 79.08539 * 16 15 14 31 31 H 1.08997 * 108.87972 * 197.50290 * 17 16 15 32 32 H 1.08999 * 108.79450 * 79.00351 * 17 16 15 33 33 H 1.09003 * 109.62538 * 334.44361 * 18 17 16 34 34 H 1.09000 * 109.62535 * 213.86504 * 18 17 16 35 35 H 1.08998 * 108.89621 * 303.43864 * 19 13 3 36 36 H 1.08993 * 108.89612 * 61.93823 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2221 2.0540 0.0811 5 6 2.9503 1.4368 1.1705 6 1 3.9953 1.6512 1.0024 7 6 2.4761 1.2834 2.4560 8 7 1.2034 1.0228 2.6608 9 14 3.6414 1.4456 3.9069 10 1 4.2459 2.8020 3.9071 11 1 2.8899 1.2390 5.1710 12 1 4.7148 0.4253 3.7963 13 6 2.7844 1.5190 -1.3023 14 6 3.3508 2.9536 -1.3172 15 6 4.4943 3.0060 -2.2939 16 6 4.0525 3.4723 -3.6943 17 6 2.7148 2.8492 -4.1372 18 6 2.6150 1.3897 -3.7849 19 6 1.8962 1.2616 -2.4262 20 1 -0.3633 -1.0238 0.0886 21 1 -0.3634 0.5887 0.8423 22 1 -0.3633 0.4351 -0.9311 23 1 0.8697 0.9152 3.5653 24 1 3.6140 0.8129 -1.3392 25 1 2.5727 3.6513 -1.6267 26 1 3.7076 3.2167 -0.3214 27 1 4.9340 2.0120 -2.3757 28 1 5.2502 3.6939 -1.9154 29 1 4.8232 3.1992 -4.4151 30 1 3.9489 4.5574 -3.6854 31 1 2.6149 2.9590 -5.2170 32 1 1.8997 3.3857 -3.6516 33 1 3.6147 0.9614 -3.7120 34 1 2.0443 0.8661 -4.5519 35 1 1.4931 0.2531 -2.3339 36 1 1.0716 1.9736 -2.3947 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:44 Heat of formation + Delta-G solvation = -91.681988 kcal Electronic energy + Delta-G solvation = -15233.273186 eV Core-core repulsion = 12908.691879 eV Total energy + Delta-G solvation = -2324.581306 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28613 -37.77935 -34.55953 -33.50605 -32.88097 -29.21382 -26.82743 -25.90871 -25.24896 -22.94261 -20.95889 -20.02495 -18.58229 -17.05136 -16.79052 -16.33334 -15.55705 -15.40223 -15.17315 -14.80355 -14.38311 -13.80110 -13.72699 -13.38428 -12.91165 -12.83350 -12.79287 -12.68000 -12.10139 -11.94785 -11.78357 -11.43470 -11.32969 -11.14543 -11.11273 -11.02764 -10.79996 -10.53324 -9.58958 -8.12223 -6.26553 1.40462 1.42836 1.49805 2.42294 3.08047 3.73034 3.90911 3.97926 4.14108 4.41795 4.42989 4.47727 4.56879 4.63129 4.68526 4.71748 4.88560 4.99398 5.02730 5.08007 5.20127 5.21431 5.27910 5.38769 5.46427 5.47843 5.48454 5.52489 5.64084 5.71659 5.77297 5.86364 6.31085 6.78723 7.16901 7.45245 8.94997 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.034659 B = 0.010316 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.675461 B = 2713.601242 C = 3354.929719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 O -0.408 6.408 3 C 0.217 3.783 4 H -0.013 1.013 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.904 5.904 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.275 1.275 13 C -0.081 4.081 14 C -0.099 4.099 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.104 4.104 20 H 0.066 0.934 21 H 0.031 0.969 22 H 0.025 0.975 23 H 0.260 0.740 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 3.602 -11.103 11.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.328 6.328 3 C 0.161 3.839 4 H 0.005 0.995 5 C -0.582 4.582 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.543 5.543 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.200 1.200 13 C -0.100 4.100 14 C -0.136 4.136 15 C -0.151 4.151 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.142 4.142 20 H 0.085 0.915 21 H 0.050 0.950 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.671 3.413 -10.979 11.803 hybrid contribution 0.005 0.042 1.312 1.313 sum 2.676 3.456 -9.666 10.608 Atomic orbital electron populations 1.22451 0.83330 1.00631 0.98213 1.87808 1.18378 1.31817 1.94774 1.19768 0.91080 0.80772 0.92251 0.99498 1.21724 0.95911 1.48698 0.91860 0.92236 1.25839 0.96548 0.93909 1.01691 1.70038 1.14700 1.47971 1.21541 0.85666 0.79005 0.78866 0.78357 1.19178 1.20946 1.19991 1.20269 0.98009 0.96799 0.94877 1.21202 0.98038 0.95246 0.99150 1.21306 0.97394 1.01162 0.95237 1.21888 0.97177 1.00206 0.95494 1.21328 0.97692 0.95272 1.01039 1.21289 1.00467 0.97324 0.95550 1.20462 0.98101 1.00537 0.95057 0.91497 0.95035 0.95651 0.93114 0.93846 0.92636 0.92925 0.92994 0.92047 0.91157 0.91733 0.90704 0.93106 0.92064 0.91114 0.93603 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.37 10.09 113.37 1.14 3.52 16 2 O -0.41 -21.99 8.80 -148.98 -1.31 -23.30 16 3 C 0.22 11.38 1.66 29.85 0.05 11.43 16 4 H -0.01 -0.72 7.59 -2.38 -0.02 -0.74 16 5 C -0.54 -30.86 7.76 25.60 0.20 -30.66 16 6 H 0.06 3.29 7.09 -2.91 -0.02 3.27 16 7 C 0.02 1.20 5.40 84.65 0.46 1.65 16 8 N -0.90 -53.29 11.42 21.45 0.24 -53.04 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C -0.08 -3.42 1.47 -12.65 -0.02 -3.44 16 14 C -0.10 -3.70 4.87 30.20 0.15 -3.55 16 15 C -0.11 -3.37 5.31 30.14 0.16 -3.21 16 16 C -0.11 -2.61 5.85 31.32 0.18 -2.42 16 17 C -0.12 -2.82 5.32 30.14 0.16 -2.66 16 18 C -0.11 -3.03 5.61 30.20 0.17 -2.86 16 19 C -0.10 -3.78 4.01 28.74 0.12 -3.66 16 20 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 21 H 0.03 1.61 6.92 -2.39 -0.02 1.60 16 22 H 0.03 1.04 7.69 -2.38 -0.02 1.03 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.04 1.95 7.46 -2.39 -0.02 1.93 16 25 H 0.05 1.99 6.97 -2.39 -0.02 1.97 16 26 H 0.05 2.23 6.44 -2.39 -0.02 2.21 16 27 H 0.05 1.60 6.63 -2.38 -0.02 1.58 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.34 6.63 -2.39 -0.02 1.32 16 33 H 0.06 1.73 6.98 -2.39 -0.02 1.71 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.79 6.83 -2.39 -0.02 1.77 16 36 H 0.04 1.61 7.47 -2.39 -0.02 1.59 16 Total: -1.00 -62.29 270.28 4.75 -57.53 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.03 Total: 8.10 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 2.77 Total: -35.86 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.24 Total: -53.04 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.31 Total: -23.30 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -62.29 4.75 -57.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.150 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds