Wall clock time and date at job start Mon Mar 30 2020 02:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99982 * 2 1 4 4 C 1.53004 * 109.46970 * 173.53883 * 3 2 1 5 5 C 1.50694 * 109.47068 * 53.54067 * 3 2 1 6 6 H 1.08000 * 120.00218 * 239.99782 * 5 3 2 7 7 C 1.37883 * 120.00311 * 59.99864 * 5 3 2 8 8 N 1.31512 * 120.00138 * 179.97438 * 7 5 3 9 9 Si 1.86797 * 119.99728 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47477 * 89.99818 * 9 7 5 11 11 H 1.48505 * 109.47053 * 209.99911 * 9 7 5 12 12 H 1.48504 * 109.47170 * 329.99809 * 9 7 5 13 13 C 1.52996 * 109.46893 * 293.53748 * 3 2 1 14 14 C 1.53001 * 109.47228 * 69.27543 * 13 3 2 15 15 C 1.52996 * 109.47228 * 179.97438 * 14 13 3 16 16 C 1.53000 * 109.47617 * 59.99583 * 15 14 13 17 17 C 1.53004 * 109.46771 * 300.00100 * 16 15 14 18 18 C 1.52996 * 109.47313 * 59.99950 * 17 16 15 19 19 H 1.09002 * 109.46930 * 331.59455 * 1 2 3 20 20 H 1.09001 * 109.47318 * 91.58914 * 1 2 3 21 21 H 1.09003 * 109.47235 * 211.59708 * 1 2 3 22 22 H 1.09006 * 109.47148 * 59.99814 * 4 3 2 23 23 H 1.08997 * 109.47185 * 300.00135 * 4 3 2 24 24 H 1.08994 * 109.47260 * 179.97438 * 4 3 2 25 25 H 0.96998 * 119.99541 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.47129 * 189.26879 * 13 3 2 27 27 H 1.09002 * 109.46791 * 299.99244 * 14 13 3 28 28 H 1.08997 * 109.47750 * 59.99212 * 14 13 3 29 29 H 1.09004 * 109.47129 * 299.99335 * 15 14 13 30 30 H 1.09004 * 109.47214 * 179.97438 * 15 14 13 31 31 H 1.08997 * 109.47219 * 180.02562 * 16 15 14 32 32 H 1.08996 * 109.47259 * 59.99486 * 16 15 14 33 33 H 1.09002 * 109.47278 * 300.00119 * 17 16 15 34 34 H 1.08997 * 109.46932 * 179.97438 * 17 16 15 35 35 H 1.08999 * 109.47464 * 180.02562 * 18 17 16 36 36 H 1.09004 * 109.47321 * 59.99898 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5271 1.1884 0.1623 5 6 1.4432 2.1078 1.1427 6 1 0.9089 3.0254 0.9455 7 6 1.6066 1.6704 2.4401 8 7 1.1122 2.3709 3.4373 9 14 2.5314 0.0837 2.7813 10 1 3.9750 0.3813 2.9629 11 1 1.9966 -0.5453 4.0156 12 1 2.3579 -0.8463 1.6366 13 6 1.6914 2.0056 -1.3225 14 6 0.1973 2.3301 -1.3805 15 6 -0.1214 3.0308 -2.7027 16 6 0.2465 2.1114 -3.8690 17 6 1.7406 1.7870 -3.8109 18 6 2.0594 1.0862 -2.4887 19 1 -0.3633 0.9040 0.4889 20 1 -0.3634 -0.0285 -1.0273 21 1 -0.3634 -0.8753 0.5384 22 1 3.9373 0.6080 -0.6642 23 1 3.7543 0.6895 1.1044 24 1 3.9705 2.1840 0.1619 25 1 1.2269 2.0629 4.3500 26 1 2.2666 2.9289 -1.3927 27 1 -0.3779 1.4069 -1.3104 28 1 -0.0648 2.9855 -0.5500 29 1 0.4538 3.9541 -2.7725 30 1 -1.1859 3.2616 -2.7443 31 1 0.0198 2.6108 -4.8109 32 1 -0.3286 1.1881 -3.7992 33 1 2.3159 2.7103 -3.8806 34 1 2.0027 1.1317 -4.6414 35 1 3.1239 0.8556 -2.4471 36 1 1.4842 0.1629 -2.4189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261292819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:14 Heat of formation + Delta-G solvation = -48.814552 kcal Electronic energy + Delta-G solvation = -15794.198777 eV Core-core repulsion = 13471.476343 eV Total energy + Delta-G solvation = -2322.722435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.16630 -36.06825 -32.64174 -31.46385 -30.31900 -28.80289 -25.67420 -24.92167 -22.49460 -21.69655 -19.44893 -19.04444 -16.83846 -15.47977 -14.76653 -14.36137 -14.17193 -13.60424 -13.55929 -13.15532 -12.62026 -12.33664 -12.24169 -11.80433 -11.77274 -11.35405 -11.08355 -10.90217 -10.49120 -10.44841 -10.27719 -10.06612 -9.92486 -9.49586 -9.38590 -9.21567 -8.62435 -8.49618 -7.75680 -6.11168 -4.18854 3.37398 3.50138 3.72905 4.52282 5.02432 5.20305 5.28196 5.29141 5.42954 5.79096 5.83600 6.00719 6.03784 6.08020 6.09882 6.16023 6.36584 6.39507 6.43813 6.50367 6.55327 6.59280 6.65498 6.74971 6.79225 6.86895 6.96061 7.01511 7.17330 7.19096 7.43873 7.70154 8.25386 8.76605 8.92827 9.54409 10.98863 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.043304 B = 0.012008 C = 0.011191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.433897 B = 2331.276491 C = 2501.452196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.395 6.395 3 C 0.201 3.799 4 C -0.133 4.133 5 C -0.542 4.542 6 H 0.079 0.921 7 C 0.084 3.916 8 N -0.892 5.892 9 Si 0.872 3.128 10 H -0.289 1.289 11 H -0.307 1.307 12 H -0.219 1.219 13 C -0.087 4.087 14 C -0.135 4.135 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.118 4.118 18 C -0.112 4.112 19 H 0.075 0.925 20 H 0.026 0.974 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.238 -1.990 -10.957 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.163 3.837 4 C -0.190 4.190 5 C -0.579 4.579 6 H 0.097 0.903 7 C -0.120 4.120 8 N -0.529 5.529 9 Si 0.701 3.299 10 H -0.217 1.217 11 H -0.235 1.235 12 H -0.141 1.141 13 C -0.106 4.106 14 C -0.172 4.172 15 C -0.158 4.158 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.149 4.149 19 H 0.094 0.906 20 H 0.044 0.956 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.149 -2.136 -10.791 11.001 hybrid contribution 0.365 -0.402 0.434 0.695 sum 0.216 -2.538 -10.357 10.666 Atomic orbital electron populations 1.22741 0.83962 1.01990 0.97628 1.87928 1.18199 1.30947 1.94426 1.19502 0.90301 0.81362 0.92528 1.21960 0.96581 1.00726 0.99690 1.21373 1.37016 1.09806 0.89665 0.90277 1.25011 0.94175 0.96816 0.96048 1.69943 1.44678 1.38881 0.99396 0.87216 0.78617 0.85955 0.78068 1.21696 1.23525 1.14133 1.21463 0.96079 0.97972 0.95052 1.22233 0.97008 1.01942 0.95971 1.21595 0.99851 0.98405 0.95901 1.21508 0.96530 0.99555 0.97743 1.21544 0.96101 1.00020 0.97843 1.21557 1.00643 0.99093 0.93640 0.90643 0.95608 0.94043 0.94361 0.93699 0.92045 0.92668 0.92103 0.90218 0.90638 0.92850 0.93045 0.93236 0.92484 0.92669 0.93134 0.92731 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 8.93 101.05 0.90 1.59 16 2 O -0.39 -9.10 6.18 -35.23 -0.22 -9.32 16 3 C 0.20 4.58 0.35 -91.77 -0.03 4.55 16 4 C -0.13 -2.91 8.17 37.16 0.30 -2.61 16 5 C -0.54 -14.42 6.20 -34.44 -0.21 -14.63 16 6 H 0.08 2.27 6.32 -52.49 -0.33 1.94 16 7 C 0.08 2.36 5.45 -17.82 -0.10 2.26 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 9 Si 0.87 22.15 23.91 -169.99 -4.06 18.08 16 10 H -0.29 -7.28 6.87 56.52 0.39 -6.89 16 11 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 12 H -0.22 -5.42 5.30 56.52 0.30 -5.12 16 13 C -0.09 -1.70 1.56 -90.62 -0.14 -1.84 16 14 C -0.13 -2.50 3.81 -26.73 -0.10 -2.61 16 15 C -0.12 -1.85 5.92 -26.73 -0.16 -2.01 16 16 C -0.12 -1.61 5.92 -26.73 -0.16 -1.77 16 17 C -0.12 -1.69 5.92 -26.73 -0.16 -1.85 16 18 C -0.11 -1.91 4.78 -26.73 -0.13 -2.04 16 19 H 0.08 1.71 5.34 -51.93 -0.28 1.43 16 20 H 0.03 0.48 5.99 -51.93 -0.31 0.17 16 21 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.04 0.74 6.72 -51.93 -0.35 0.39 16 23 H 0.04 1.05 3.27 -51.93 -0.17 0.88 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 26 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 27 H 0.08 1.48 3.76 -51.93 -0.20 1.28 16 28 H 0.08 1.58 6.10 -51.93 -0.32 1.27 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.92 6.72 -51.93 -0.35 0.57 16 36 H 0.06 1.14 7.08 -51.93 -0.37 0.77 16 LS Contribution 253.20 15.07 3.82 3.82 Total: -1.00 -28.74 253.20 -5.40 -34.14 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.72 Total: 0.22 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 0.02 Total: -20.96 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.77 Total: -25.99 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.22 Total: -9.32 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.06 Total: 18.08 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.74 -5.40 -34.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.676 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds